Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37370 Davidia involucrata HOM05D000747 ORTHO05D014617 8.0e-100 367.1 183 100.0
CSS0041176 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D007656 1.0e-70 270.4 214 65.0
Actinidia28937 Actinidia chinensis HOM05D002509 ORTHO05D007656 1.3e-70 270.0 214 65.4
CSS0008408 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D007656 8.6e-70 267.3 214 65.0
Lj2C125G13 Lonicera japonica HOM05D000747 ORTHO05D007656 2.3e-67 259.2 214 63.1
GSVIVG01033734001 Vitis vinifera HOM05D000747 ORTHO05D007656 2.3e-67 259.2 213 64.8
Hma1.2p1_0564F.1_g179100 Hydrangea macrophylla HOM05D000747 ORTHO05D007656 5.8e-66 254.6 207 66.2
vmacro07348 Vaccinium macrocarpon HOM05D000747 ORTHO05D007656 1.2e-63 246.9 211 61.1
QL07p041161 Quercus lobata HOM05D000747 ORTHO05D007656 2.0e-63 246.1 214 63.6
Manes.08G017600 Manihot esculenta HOM05D000747 ORTHO05D007656 1.5e-61 240.0 214 60.3
Haze_19502 Corylus avellana HOM05D000747 ORTHO05D007656 1.2e-60 236.9 214 60.3
Glyma.19G189100 Glycine max HOM05D000747 ORTHO05D007656 3.1e-59 232.3 214 57.0
TAR633G1427 Trochodendron aralioides HOM05D000747 ORTHO05D007656 5.2e-59 231.5 214 57.9
Medtr7g103210 Medicago truncatula HOM05D000747 ORTHO05D007656 3.4e-58 228.8 213 56.8
CiPaw.09G006200 Carya illinoinensis HOM05D000747 ORTHO05D007656 2.2e-57 226.1 215 58.1
Ciclev10010940m.g Citrus clementina HOM05D000747 ORTHO05D007656 2.2e-57 226.1 216 56.5
Cfa016498 Carpinus fangiana HOM05D000747 ORTHO05D007656 4.9e-57 224.9 207 59.4
Ca_08946_v3 Cicer arietinum L. HOM05D000747 ORTHO05D007656 6.4e-57 224.6 213 56.3
ECA233G1002 Erigeron canadensis HOM05D000747 ORTHO05D007656 1.1e-56 223.8 213 54.9
Cpa.g.sc5.113 Carica papaya HOM05D000747 ORTHO05D007656 1.9e-56 223.0 214 54.7
Lsat_1_v5_gn_6_29141 Lactuca sativa HOM05D000747 ORTHO05D007656 1.9e-56 223.0 214 54.7
Phvul.001G184300 Phaseolus vulgaris HOM05D000747 ORTHO05D007656 1.9e-56 223.0 214 55.6
Atru.chr8.1679 Acer truncatum HOM05D000747 ORTHO05D007656 5.4e-56 221.5 214 57.5
Lj1g0024972 Lotus japonicus HOM05D000747 ORTHO05D007656 9.2e-56 220.7 214 55.1
TPR.G31502 Trifolium pratense HOM05D000747 ORTHO05D007656 1.2e-55 220.3 213 54.5
Psat3g037640 Pisum sativum HOM05D000747 ORTHO05D007656 2.1e-55 219.5 213 54.0
Prupe.7G121800 Prunus persica HOM05D000747 ORTHO05D007656 4.6e-55 218.4 215 55.3
TWI74G1020 Tripterygium wilfordii HOM05D000747 ORTHO05D007656 7.8e-55 217.6 213 55.9
CANSAT80G1343 Cannabis sativa HOM05D000747 ORTHO05D007656 1.7e-54 216.5 214 53.7
RcHm_v2.0_Chr3g0471541 Rosa chinensis HOM05D000747 ORTHO05D007656 8.6e-54 214.2 216 55.1
Nn6g35131 Nelumbo nucifera HOM05D000747 ORTHO05D007656 1.1e-53 213.8 214 54.7
HanXRQChr13g0400251 Helianthus annuus HOM05D000747 ORTHO05D007656 1.9e-53 213.0 214 52.8
Aqoxy2G01524 Aquilegia oxysepala HOM05D000747 ORTHO05D007656 2.5e-53 212.6 210 54.3
FvH4_6g17370 Fragaria vesca HOM05D000747 ORTHO05D007656 7.3e-53 211.1 216 54.6
MD14G1095600 Malus domestica HOM05D000747 ORTHO05D007656 3.6e-52 208.8 215 54.0
THA.LOC104827502 Tarenaya hassleriana HOM05D000747 ORTHO05D007656 3.6e-52 208.8 213 52.6
PGR004G0414 Punica granatum HOM05D000747 ORTHO05D007656 8.1e-52 207.6 211 54.0
FAN05G2234 Fragaria x ananassa HOM05D000747 ORTHO05D007656 1.4e-51 206.8 216 53.2
COL.COLO4_22271 Corchorus olitorius HOM05D000747 ORTHO05D007656 1.8e-51 206.5 214 51.9
Peaxi162Scf00500g00219 Petunia axillaris HOM05D000747 ORTHO05D007656 1.8e-51 206.5 213 50.2
Gohir.D01G200300 Gossypium hirsutum HOM05D000747 ORTHO05D007656 2.4e-51 206.1 214 52.3
Eucgr.A01586 Eucalyptus grandis HOM05D000747 ORTHO05D007656 3.1e-51 205.7 214 51.4
FAN09G3532 Fragaria x ananassa HOM05D000747 ORTHO05D007656 3.1e-51 205.7 216 53.7
FAN05G4185 Fragaria x ananassa HOM05D000747 ORTHO05D007656 4.0e-51 205.3 216 52.8
Gorai.002G245000 Gossypium raimondii HOM05D000747 ORTHO05D007656 8.9e-51 204.1 214 52.3
Gohir.A01G211500 Gossypium hirsutum HOM05D000747 ORTHO05D007656 1.2e-50 203.8 214 52.3
Sed0020895 Sechium edule HOM05D000747 ORTHO05D007656 1.2e-50 203.8 214 50.0
Potri.016G096500 Populus trichocarpa HOM05D000747 ORTHO05D007656 2.0e-50 203.0 213 53.5
DCAR_020792 Daucus carota HOM05D000140 ORTHO05D007656 3.4e-50 202.2 210 51.9
MD12G1101300 Malus domestica HOM05D000747 ORTHO05D007656 7.6e-50 201.1 214 53.3
arahy.Tifrunner.gnm1.ann1.MP0EZL Arachis hypogaea HOM05D000747 ORTHO05D007656 1.3e-49 200.3 206 51.9
CsaV3_3G036630 Cucumis sativus L. HOM05D000747 ORTHO05D007656 1.3e-49 200.3 214 51.4
ClCG10G019570 Citrullus lanatus HOM05D000747 ORTHO05D007656 2.2e-49 199.5 214 51.4
Cc06_g04900 Coffea canephora HOM05D000747 ORTHO05D007656 6.4e-49 198.0 225 50.2
AT3G53090 Arabidopsis thaliana HOM05D000747 ORTHO05D007656 8.4e-49 197.6 213 48.8
AL5G33970 Arabidopsis lyrata HOM05D000747 ORTHO05D007656 4.1e-48 195.3 213 49.3
arahy.Tifrunner.gnm1.ann1.KKMU7F Arachis hypogaea HOM05D000747 ORTHO05D007656 5.4e-48 194.9 242 46.3
Thhalv10010078m.g Eutrema salsugineum HOM05D000747 ORTHO05D007656 7.1e-48 194.5 209 51.2
Aa31LG10G8250 Aethionema arabicum HOM05D000747 ORTHO05D007656 9.2e-48 194.1 213 49.8
Sc02g0001290 Simmondsia chinensis HOM05D000747 ORTHO05D007656 1.6e-47 193.4 206 50.0
Carub.0005s1961 Capsella rubella HOM05D000747 ORTHO05D007656 1.0e-46 190.7 213 48.8
Rhsim03G0085000 Rhododendron simsii HOM05D000747 ORTHO05D007656 1.0e-46 190.7 182 57.1
Sp5g09230 Schrenkiella parvula HOM05D000747 ORTHO05D007656 1.3e-46 190.3 213 49.3
EL10Ac7g16731 Beta vulgaris HOM05D000747 ORTHO05D007656 1.7e-46 189.9 215 47.9
Thecc.05G077000 Theobroma cacao HOM05D000747 ORTHO05D007656 1.7e-46 189.9 214 51.4
CAN.G1830.6 Capsicum annuum HOM05D000747 ORTHO05D007656 2.3e-46 189.5 213 46.5
Sabra16G0100500 Salix brachista HOM05D000747 ORTHO05D007656 2.3e-46 189.5 213 51.2
Ah.08g211170 Amaranthus hybridus HOM05D000747 ORTHO05D007656 3.9e-46 188.7 214 47.7
CARHR162940 Cardamine hirsuta HOM05D000747 ORTHO05D007656 6.6e-46 188.0 213 48.8
Migut.L01736 Erythranthe guttata HOM05D000747 ORTHO05D007656 1.1e-45 187.2 212 50.0
MELO3C009417.2 Cucumis melo HOM05D000747 ORTHO05D007656 1.5e-45 186.8 221 48.4
Nitab4.5_0003554g0010 Nicotiana tabacum HOM05D000747 ORTHO05D007656 2.5e-45 186.0 204 48.0
Solyc09g008700.2 Solanum lycopersicum HOM05D000747 ORTHO05D007656 5.6e-45 184.9 213 46.0
AUR62040177 Chenopodium quinoa HOM05D000747 ORTHO05D007656 7.3e-45 184.5 214 46.7
PSO339G4004 Papaver somniferum HOM05D000747 ORTHO05D007656 7.3e-45 184.5 215 49.3
BraA04t16334Z Brassica rapa HOM05D000747 ORTHO05D007656 1.6e-44 183.3 213 46.0
AUR62037922 Chenopodium quinoa HOM05D000747 ORTHO05D007656 1.6e-44 183.3 213 46.9
PSO801G0354 Papaver somniferum HOM05D000747 ORTHO05D007656 1.6e-44 183.3 215 48.4
BcaB02g08538 Brassica carinata HOM05D000747 ORTHO05D007656 8.1e-44 181.0 213 46.0
BolC4t25555H Brassica oleracea HOM05D000747 ORTHO05D007656 1.8e-43 179.9 213 45.5
BcaC02g09186 Brassica carinata HOM05D000747 ORTHO05D007656 2.4e-43 179.5 213 45.5
C04p39810 Brassica napus HOM05D000747 ORTHO05D007656 2.4e-43 179.5 213 45.5
ATR0665G301 Amborella trichopoda HOM05D000747 ORTHO05D007656 1.5e-42 176.8 207 47.3
A04p06290 Brassica napus HOM05D000747 ORTHO05D007656 2.6e-42 176.0 206 45.6
SalBow5G3738 Salvia bowleyana HOM05D000747 ORTHO05D007656 4.4e-42 175.3 214 48.1
SGA_v2.0_scaffold277G46716 Striga asiatica HOM05D000747 ORTHO05D007656 6.4e-41 171.4 213 44.6
Zm00001eb217270 Zea mays HOM05D000747 ORTHO05D007656 2.4e-40 169.5 208 45.2
HPP92_010012 Vanilla planifolia HOM05D000747 ORTHO05D014617 4.3e-37 158.7 206 44.2
MBI01_g23228_MAGBIO Magnolia biondii HOM05D000747 ORTHO05D007656 1.1e-35 154.1 218 42.7
Os03g0683900 Oryza sativa ssp. japonica HOM05D000747 ORTHO05D014617 3.5e-31 139.0 126 55.6
Nitab4.5_0006545g0010 Nicotiana tabacum HOM05D000747 ORTHO05D007656 1.8e-30 136.7 166 42.2
HPP92_015200 Vanilla planifolia HOM05D000747 ORTHO05D014617 2.8e-28 129.4 137 51.1
Lalb_Chr01g0018491 Lupinus albus HOM05D000747 ORTHO05D007656 1.4e-27 127.1 165 43.6
AagrBONN_evm.TU.Sc2ySwM_344.2314 Anthoceros agrestis HOM05D000747 ORTHO05D007656 7.9e-23 111.3 204 34.8
HPP92_009974 Vanilla planifolia HOM05D000747 ORTHO05D014617 1.1e-21 107.5 95 56.8
SMO119G0395 Selaginella moellendorffii HOM05D000747 ORTHO05D007656 2.0e-18 96.7 195 33.3
Mapoly0088s0076 Marchantia polymorpha HOM05D000747 ORTHO05D007656 2.9e-17 92.8 210 31.4
Pp3c6_23490 Physcomitrium patens HOM05D000747 ORTHO05D007656 1.4e-16 90.5 139 38.8
SHI27767 Sapria himalayana HOM05D000747 ORTHO05D014617 5.5e-16 88.6 83 51.8
CDE02G0205 Ceratophyllum demersum HOM05D001265 ORTHO05D001241 9.3e-16 87.8 69 63.8
Pp3c16_5120 Physcomitrium patens HOM05D000747 ORTHO05D007656 9.3e-16 87.8 138 37.7
Pp3c25_6380 Physcomitrium patens HOM05D000747 ORTHO05D007656 4.6e-15 85.5 139 36.0
Pp3c5_10600 Physcomitrium patens HOM05D000747 ORTHO05D007656 2.5e-13 79.7 136 34.6
MBI01_g24434_MAGBIO Magnolia biondii HOM05D000747 ORTHO05D014617 3.3e-13 79.3 46 91.3
Hund20720 Selenicereus undatus HOM05D000747 ORTHO05D014617 9.0e-11 71.2 49 75.5
HPP92_010039 Vanilla planifolia HOM05D000747 ORTHO05D014617 3.4e-10 69.3 97 36.1
Hma1.2p1_0564F.1_g179090 Hydrangea macrophylla HOM05D000747 ORTHO05D007656 2.2e-09 66.6 49 71.4
unitig_60.g25799 Utricularia gibba HOM05D000747 ORTHO05D007656 2.5e-08 63.2 41 82.9
HPP92_009989 Vanilla planifolia HOM05D022455 ORTHO05D014617 2.5e-08 63.2 42 76.2
HPP92_009996 Vanilla planifolia HOM05D022455 ORTHO05D014617 2.5e-08 63.2 42 76.2
HPP92_009995 Vanilla planifolia HOM05D022455 ORTHO05D014617 5.5e-08 62.0 42 73.8
HPP92_010037 Vanilla planifolia HOM05D022455 ORTHO05D014617 1.6e-07 60.5 42 73.8
HanXRQChr10g0299121 Helianthus annuus HOM05D000747 ORTHO05D007656 6.7e-06 55.1 44 54.5


User provided reference genes

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