Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37352 Davidia involucrata HOM05D000170 ORTHO05D007205 3.9e-63 244.6 120 100.0
Manes.08G016400 Manihot esculenta HOM05D000170 ORTHO05D007205 7.0e-28 127.5 79 81.0
TAR636G2091 Trochodendron aralioides HOM05D000170 ORTHO05D007205 7.0e-28 127.5 78 80.8
TWI53G1443 Tripterygium wilfordii HOM05D000170 ORTHO05D007205 1.2e-27 126.7 81 76.5
HanXRQChr15g0477651 Helianthus annuus HOM05D000170 ORTHO05D007205 7.7e-27 124.0 78 79.5
FvH4_6g17130 Fragaria vesca HOM05D000170 ORTHO05D007205 2.9e-26 122.1 80 75.0
FAN02G3292 Fragaria x ananassa HOM05D000170 ORTHO05D007205 2.9e-26 122.1 80 75.0
FAN14G2479 Fragaria x ananassa HOM05D000170 ORTHO05D007205 2.9e-26 122.1 80 75.0
Thecc.05G074200 Theobroma cacao HOM05D000170 ORTHO05D007205 2.9e-26 122.1 80 75.0
RcHm_v2.0_Chr3g0471211 Rosa chinensis HOM05D000170 ORTHO05D007205 3.8e-26 121.7 80 73.8
QL07p041500 Quercus lobata HOM05D000170 ORTHO05D007205 5.0e-26 121.3 85 71.8
QL07p041523 Quercus lobata HOM05D000170 ORTHO05D007205 5.0e-26 121.3 85 72.9
Cfa016464 Carpinus fangiana HOM05D000170 ORTHO05D007205 8.5e-26 120.6 78 75.6
Atru.chr8.1713 Acer truncatum HOM05D000170 ORTHO05D007205 1.1e-25 120.2 84 73.8
Haze_19465 Corylus avellana HOM05D000170 ORTHO05D007205 1.5e-25 119.8 78 75.6
Lj3g0000213 Lotus japonicus HOM05D000170 ORTHO05D007205 1.9e-25 119.4 78 71.8
Nn6g35184 Nelumbo nucifera HOM05D000170 ORTHO05D007205 1.9e-25 119.4 78 73.1
Sabra06G0094400 Salix brachista HOM05D000170 ORTHO05D007205 2.5e-25 119.0 86 73.3
FAN05G1040 Fragaria x ananassa HOM05D000170 ORTHO05D007205 3.2e-25 118.6 80 72.5
FAN05G4883 Fragaria x ananassa HOM05D000170 ORTHO05D007205 3.2e-25 118.6 80 72.5
CiPaw.09G004600 Carya illinoinensis HOM05D000170 ORTHO05D007205 4.2e-25 118.2 83 72.3
Aqoxy1G01045 Aquilegia oxysepala HOM05D000170 ORTHO05D007205 7.2e-25 117.5 78 75.6
Gohir.A04G069100 Gossypium hirsutum HOM05D000170 ORTHO05D007205 7.2e-25 117.5 85 71.8
Gohir.D04G107400 Gossypium hirsutum HOM05D000170 ORTHO05D007205 7.2e-25 117.5 84 71.4
Gorai.009G411600 Gossypium raimondii HOM05D000170 ORTHO05D007205 7.2e-25 117.5 85 71.8
Duzib093G0643 Durio zibethinus HOM05D000170 ORTHO05D007205 9.4e-25 117.1 81 74.1
ClCG10G019690 Citrullus lanatus HOM05D000170 ORTHO05D007205 1.6e-24 116.3 79 72.2
CsaV3_3G036520 Cucumis sativus L. HOM05D000170 ORTHO05D007205 1.6e-24 116.3 79 72.2
Lsat_1_v5_gn_2_19801 Lactuca sativa HOM05D000170 ORTHO05D007205 1.6e-24 116.3 81 75.3
COL.COLO4_22244 Corchorus olitorius HOM05D000170 ORTHO05D007205 2.1e-24 115.9 81 72.8
MELO3C009403.2 Cucumis melo HOM05D000170 ORTHO05D007205 2.7e-24 115.5 80 71.2
Ciclev10013655m.g Citrus clementina HOM05D000170 ORTHO05D007205 1.4e-23 113.2 82 70.7
Ca_03451_v3 Cicer arietinum L. HOM05D000170 ORTHO05D007205 3.0e-23 112.1 80 68.8
Sed0014983 Sechium edule HOM05D000170 ORTHO05D007205 3.0e-23 112.1 79 69.6
VMungo1080G0369 Vigna mungo HOM05D000170 ORTHO05D007205 3.0e-23 112.1 78 66.7
Cpa.g.sc5.132 Carica papaya HOM05D000170 ORTHO05D007205 4.0e-23 111.7 83 71.1
Glyma.13G263200 Glycine max HOM05D000170 ORTHO05D007205 5.2e-23 111.3 80 68.8
MD12G1103500 Malus domestica HOM05D000170 ORTHO05D007205 5.2e-23 111.3 83 69.9
Psat1g007920 Pisum sativum HOM05D000170 ORTHO05D007205 5.2e-23 111.3 80 65.0
Potri.006G120000 Populus trichocarpa HOM05D000170 ORTHO05D007205 5.2e-23 111.3 86 68.6
Prupe.7G123600 Prunus persica HOM05D000170 ORTHO05D007205 5.2e-23 111.3 85 70.6
arahy.Tifrunner.gnm1.ann1.DK6BL4 Arachis hypogaea HOM05D000170 ORTHO05D007205 6.7e-23 110.9 81 67.9
arahy.Tifrunner.gnm1.ann1.F8BKZV Arachis hypogaea HOM05D000170 ORTHO05D007205 6.7e-23 110.9 81 67.9
CANSAT78G0870 Cannabis sativa HOM05D000170 ORTHO05D007205 6.7e-23 110.9 81 67.9
Nitab4.5_0000725g0060 Nicotiana tabacum HOM05D000170 ORTHO05D007205 6.7e-23 110.9 86 66.3
Lalb_Chr25g0285571 Lupinus albus HOM05D000170 ORTHO05D007205 1.5e-22 109.8 79 68.4
Thhalv10010488m.g Eutrema salsugineum HOM05D000170 ORTHO05D007205 2.6e-22 109.0 85 62.4
Thhalv10023542m.g Eutrema salsugineum HOM05D000170 ORTHO05D007205 2.6e-22 109.0 87 66.7
Glyma.15G241100 Glycine max HOM05D000170 ORTHO05D007205 2.6e-22 109.0 81 69.1
PGSC0003DMG400008591 Solanum tuberosum HOM05D000170 ORTHO05D007205 3.3e-22 108.6 81 67.9
Carub.0005s1967 Capsella rubella HOM05D000170 ORTHO05D007205 7.5e-22 107.5 84 67.9
CAN.G729.7 Capsicum annuum HOM05D000170 ORTHO05D007205 1.3e-21 106.7 81 63.0
Sopen10g035230 Solanum pennellii HOM05D000170 ORTHO05D007205 1.3e-21 106.7 81 66.7
Medtr2g072790 Medicago truncatula HOM05D000170 ORTHO05D007205 1.7e-21 106.3 80 62.5
BcaB01g00314 Brassica carinata HOM05D000170 ORTHO05D007205 2.2e-21 105.9 86 62.8
Nn4g24441 Nelumbo nucifera HOM05D000170 ORTHO05D007205 2.2e-21 105.9 77 64.9
Phvul.005G070300 Phaseolus vulgaris HOM05D000170 ORTHO05D007205 2.2e-21 105.9 80 66.2
arahy.Tifrunner.gnm1.ann1.BIS5KZ Arachis hypogaea HOM05D000170 ORTHO05D007205 2.8e-21 105.5 80 65.0
TPR.G27302 Trifolium pratense HOM05D000170 ORTHO05D007205 2.8e-21 105.5 80 63.8
AT3G53140 Arabidopsis thaliana HOM05D000170 ORTHO05D007205 3.7e-21 105.1 84 66.7
CARHR162990 Cardamine hirsuta HOM05D000170 ORTHO05D007205 3.7e-21 105.1 84 65.5
Sc02g0001380 Simmondsia chinensis HOM05D000170 ORTHO05D007205 3.7e-21 105.1 81 64.2
THA.LOC104818584 Tarenaya hassleriana HOM05D000170 ORTHO05D007205 3.7e-21 105.1 79 67.1
arahy.Tifrunner.gnm1.ann1.D2PEMM Arachis hypogaea HOM05D000170 ORTHO05D007205 4.8e-21 104.8 80 65.0
AL5G34020 Arabidopsis lyrata HOM05D000170 ORTHO05D007205 8.3e-21 104.0 84 64.3
BraA04t16330Z Brassica rapa HOM05D000170 ORTHO05D007205 1.4e-20 103.2 85 62.4
Solyc10g085830.2 Solanum lycopersicum HOM05D000170 ORTHO05D007205 1.4e-20 103.2 81 64.2
Sp5g09180 Schrenkiella parvula HOM05D000170 ORTHO05D007205 1.8e-20 102.8 85 63.5
A04p06250 Brassica napus HOM05D000170 ORTHO05D007205 2.4e-20 102.4 85 62.4
PSO063G2881 Papaver somniferum HOM05D000170 ORTHO05D007205 2.4e-20 102.4 85 64.7
PGR004G2213 Punica granatum HOM05D000170 ORTHO05D007205 3.1e-20 102.1 84 65.5
Aa31LG10G8310 Aethionema arabicum HOM05D000170 ORTHO05D007205 5.3e-20 101.3 88 61.4
BcaC02g09181 Brassica carinata HOM05D000170 ORTHO05D007205 5.3e-20 101.3 85 61.2
C04p39760 Brassica napus HOM05D000170 ORTHO05D007205 5.3e-20 101.3 85 61.2
BolC4t25548H Brassica oleracea HOM05D000170 ORTHO05D007205 5.3e-20 101.3 85 61.2
Sopen10g035240 Solanum pennellii HOM05D000170 ORTHO05D007205 9.1e-20 100.5 80 61.2
Ca_16937_v3 Cicer arietinum L. HOM05D000170 ORTHO05D007205 1.2e-19 100.1 85 58.8
Nn1g01182 Nelumbo nucifera HOM05D000170 ORTHO05D007205 2.0e-19 99.4 73 63.0
CAN.G729.6 Capsicum annuum HOM05D000170 ORTHO05D007205 5.9e-19 97.8 81 63.0
arahy.Tifrunner.gnm1.ann1.I1E7E1 Arachis hypogaea HOM05D000170 ORTHO05D007205 1.3e-18 96.7 77 62.3
arahy.Tifrunner.gnm1.ann1.S7NHY3 Arachis hypogaea HOM05D000170 ORTHO05D007205 1.3e-18 96.7 77 62.3
Medtr3g096050 Medicago truncatula HOM05D000170 ORTHO05D007205 1.3e-18 96.7 80 58.8
BcaB02g08534 Brassica carinata HOM05D000170 ORTHO05D007205 3.8e-18 95.1 85 60.0
Lalb_Chr08g0238401 Lupinus albus HOM05D000170 ORTHO05D007205 1.1e-17 93.6 80 58.8
Ciclev10033543m.g Citrus clementina HOM05D000170 ORTHO05D007205 2.5e-17 92.4 68 73.5
Psat3g060280 Pisum sativum HOM05D000170 ORTHO05D007205 3.2e-17 92.0 80 58.8
Psat3g060200 Pisum sativum HOM05D000170 ORTHO05D007205 7.2e-17 90.9 80 58.8
TPR.G34644 Trifolium pratense HOM05D000170 ORTHO05D007205 9.4e-17 90.5 73 61.6
CDE06G0899 Ceratophyllum demersum HOM05D000170 ORTHO05D007205 1.2e-16 90.1 79 62.0
Actinidia29541 Actinidia chinensis HOM05D000170 ORTHO05D007205 1.6e-16 89.7 55 76.4
Ciclev10010561m.g Citrus clementina HOM05D000170 ORTHO05D007205 8.0e-16 87.4 68 67.6
SEGI_14789 Sequoiadendron giganteum HOM05D000170 ORTHO05D007205 1.0e-15 87.0 86 57.0
Medtr3g096070 Medicago truncatula HOM05D000170 ORTHO05D007205 1.2e-14 83.6 67 61.2
Ciclev10029876m.g Citrus clementina HOM05D000170 ORTHO05D007205 2.0e-14 82.8 68 67.6
Nn1g08779 Nelumbo nucifera HOM05D000170 ORTHO05D018666 2.0e-14 82.8 58 69.0
EL10Ac7g16712 Beta vulgaris HOM05D000170 ORTHO05D007205 4.4e-14 81.6 76 56.6
AUR62026973 Chenopodium quinoa HOM05D000170 ORTHO05D007205 4.4e-14 81.6 81 54.3
Nn1g04240 Nelumbo nucifera HOM05D000170 ORTHO05D007205 7.5e-14 80.9 57 73.7
Ah.08g211320 Amaranthus hybridus HOM05D000170 ORTHO05D007205 1.4e-12 76.6 79 50.6
AUR62029078 Chenopodium quinoa HOM05D000170 ORTHO05D007205 4.1e-12 75.1 70 57.1
Nn1g02666 Nelumbo nucifera HOM05D000170 ORTHO05D018666 9.1e-12 73.9 57 63.2
Peaxi162Scf00017g00118 Petunia axillaris HOM05D000170 ORTHO05D007205 1.7e-10 69.7 48 72.9
Os02g0823400 Oryza sativa ssp. japonica HOM05D000170 ORTHO05D007205 3.8e-10 68.6 79 46.8
ATR0665G430 Amborella trichopoda HOM05D000170 ORTHO05D007205 5.0e-10 68.2 76 42.1
ECA238G3369 Erigeron canadensis HOM05D005722 ORTHO05D007934 4.2e-09 65.1 54 63.0
Zm00001eb190920 Zea mays HOM05D000170 ORTHO05D007205 4.7e-08 61.6 73 43.8
Nn2g10706 Nelumbo nucifera HOM05D000170 ORTHO05D018666 2.3e-07 59.3 48 62.5
BolC8t50445H Brassica oleracea HOM05D001265 ORTHO05D001241 4.0e-07 58.5 90 42.2
SEGI_03943 Sequoiadendron giganteum HOM05D000170 ORTHO05D000159 6.8e-07 57.8 73 45.2


User provided reference genes

Program Settings