Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37301 Davidia involucrata HOM05D006384 ORTHO05D007917 8.1e-160 567.0 283 100.0
Hma1.2p1_0205F.1_g087265 Hydrangea macrophylla HOM05D006384 ORTHO05D007917 4.7e-107 391.7 284 73.6
Haze_20571 Corylus avellana HOM05D006384 ORTHO05D007917 5.7e-105 384.8 295 70.2
CiPaw.10G132500 Carya illinoinensis HOM05D006384 ORTHO05D007917 1.8e-103 379.8 294 70.4
Lj2A115T51 Lonicera japonica HOM05D006384 ORTHO05D007917 7.7e-102 374.4 296 69.3
QL07p044018 Quercus lobata HOM05D006384 ORTHO05D007917 6.5e-101 371.3 320 65.0
MD12G1115500 Malus domestica HOM05D006384 ORTHO05D007917 4.2e-100 368.6 291 69.4
Rhsim03G0093600 Rhododendron simsii HOM05D006384 ORTHO05D007917 7.2e-100 367.9 299 68.2
Prupe.6G234600 Prunus persica HOM05D006384 ORTHO05D007917 2.3e-98 362.8 287 68.3
Thecc.05G063500 Theobroma cacao HOM05D006384 ORTHO05D007917 2.3e-98 362.8 288 67.4
Cc06_g04070 Coffea canephora HOM05D006384 ORTHO05D007917 4.0e-98 362.1 301 65.1
Gorai.009G415700 Gossypium raimondii HOM05D006384 ORTHO05D007917 2.0e-97 359.8 288 67.4
TWI74G0201 Tripterygium wilfordii HOM05D006384 ORTHO05D007917 2.6e-97 359.4 292 68.8
Gohir.A04G072900 Gossypium hirsutum HOM05D006384 ORTHO05D007917 3.4e-97 359.0 288 67.4
arahy.Tifrunner.gnm1.ann1.TG2889 Arachis hypogaea HOM05D006384 ORTHO05D007917 4.4e-97 358.6 291 67.7
FAN09G1862 Fragaria x ananassa HOM05D006384 ORTHO05D007917 4.4e-97 358.6 286 67.8
RcHm_v2.0_Chr3g0469981 Rosa chinensis HOM05D006384 ORTHO05D007917 7.5e-97 357.8 294 67.0
arahy.Tifrunner.gnm1.ann1.FRB5VT Arachis hypogaea HOM05D006384 ORTHO05D007917 2.8e-96 355.9 291 68.4
Gohir.D04G111800 Gossypium hirsutum HOM05D006384 ORTHO05D007917 2.8e-96 355.9 288 66.7
Solyc10g086210.2 Solanum lycopersicum HOM05D006384 ORTHO05D007917 2.8e-96 355.9 287 67.2
Duzib093G1098 Durio zibethinus HOM05D006384 ORTHO05D007917 3.7e-96 355.5 288 66.7
FAN14G1974 Fragaria x ananassa HOM05D006384 ORTHO05D007917 3.7e-96 355.5 286 67.8
FAN14G4113 Fragaria x ananassa HOM05D006384 ORTHO05D007917 3.7e-96 355.5 286 67.8
Sopen10g035590 Solanum pennellii HOM05D006384 ORTHO05D007917 3.7e-96 355.5 287 67.2
FAN02G0742 Fragaria x ananassa HOM05D006384 ORTHO05D007917 6.3e-96 354.8 286 67.5
Nn2g11540 Nelumbo nucifera HOM05D006384 ORTHO05D007917 8.3e-96 354.4 293 65.9
Migut.L01690 Erythranthe guttata HOM05D006384 ORTHO05D007917 2.0e-94 349.7 289 67.1
TAR369G0955 Trochodendron aralioides HOM05D006384 ORTHO05D007917 4.5e-94 348.6 296 65.2
Potri.006G126200 Populus trichocarpa HOM05D006384 ORTHO05D007917 5.9e-94 348.2 302 64.2
Atru.chr8.1840 Acer truncatum HOM05D006384 ORTHO05D007917 7.2e-92 341.3 296 63.2
Nitab4.5_0002130g0050 Nicotiana tabacum HOM05D006384 ORTHO05D007917 9.5e-92 340.9 313 62.0
CANSAT80G0575 Cannabis sativa HOM05D006384 ORTHO05D007917 2.1e-91 339.7 286 65.4
CAN.G509.15 Capsicum annuum HOM05D006384 ORTHO05D007917 3.6e-91 339.0 289 64.0
Lj1g0002515 Lotus japonicus HOM05D006384 ORTHO05D007917 3.6e-91 339.0 293 65.9
THA.LOC104823480 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 4.7e-91 338.6 297 63.6
Thhalv10016975m.g Eutrema salsugineum HOM05D006384 ORTHO05D007917 1.0e-90 337.4 299 61.9
ClCG10G020230 Citrullus lanatus HOM05D006384 ORTHO05D007917 1.4e-90 337.0 296 62.5
COL.COLO4_26986 Corchorus olitorius HOM05D006384 ORTHO05D001525 8.9e-90 334.3 248 68.5
MELO3C009346.2 Cucumis melo HOM05D006384 ORTHO05D007917 8.9e-90 334.3 290 62.8
Peaxi162Scf00488g00042 Petunia axillaris HOM05D006384 ORTHO05D007917 4.4e-89 332.0 213 77.5
Nitab4.5_0000754g0290 Nicotiana tabacum HOM05D006384 ORTHO05D007917 1.3e-88 330.5 318 60.1
BcaC01g05625 Brassica carinata HOM05D006384 ORTHO05D007917 1.7e-88 330.1 289 61.6
Glyma.19G182800 Glycine max HOM05D006384 ORTHO05D007917 1.7e-88 330.1 286 64.0
MSTRG.10316 Avicennia marina HOM05D006384 ORTHO05D007917 2.2e-88 329.7 291 62.9
HanXRQChr01g0027531 Helianthus annuus HOM05D006384 ORTHO05D007917 2.2e-88 329.7 274 64.6
CsaV3_3G035870 Cucumis sativus L. HOM05D006384 ORTHO05D007917 2.8e-88 329.3 294 61.6
Lalb_Chr20g0112661 Lupinus albus HOM05D006384 ORTHO05D007917 4.9e-88 328.6 287 63.8
C03p23970 Brassica napus HOM05D006384 ORTHO05D007917 8.3e-88 327.8 290 61.7
GSVIVG01025711001 Vitis vinifera HOM05D006384 ORTHO05D007917 1.4e-87 327.0 216 75.5
AL4G33330 Arabidopsis lyrata HOM05D006384 ORTHO05D007917 2.4e-87 326.2 289 61.9
SalBow5G1519 Salvia bowleyana HOM05D006384 ORTHO05D007917 2.4e-87 326.2 304 60.2
SalBow5G1643 Salvia bowleyana HOM05D006384 ORTHO05D007917 2.4e-87 326.2 304 60.2
THA.LOC104806487 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 3.1e-87 325.9 230 72.6
BolC3t14788H Brassica oleracea HOM05D006384 ORTHO05D007917 4.1e-87 325.5 290 61.4
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 7.0e-87 324.7 293 62.1
SGA_v2.0_scaffold452G51820 Striga asiatica HOM05D006384 ORTHO05D007917 7.0e-87 324.7 289 62.6
Eucgr.A01141 Eucalyptus grandis HOM05D006384 ORTHO05D007917 9.2e-87 324.3 294 61.2
AT2G37020 Arabidopsis thaliana HOM05D006384 ORTHO05D007917 1.2e-86 323.9 299 60.9
Ca_08852_v3 Cicer arietinum L. HOM05D006384 ORTHO05D007917 1.2e-86 323.9 289 61.6
BcaB01g03801 Brassica carinata HOM05D006384 ORTHO05D007917 2.7e-86 322.8 296 59.8
A03p20380 Brassica napus HOM05D006384 ORTHO05D007917 3.5e-86 322.4 287 61.7
BraA03t11282Z Brassica rapa HOM05D006384 ORTHO05D007917 3.5e-86 322.4 287 61.7
Sp4g19300 Schrenkiella parvula HOM05D006384 ORTHO05D007917 3.5e-86 322.4 296 59.1
Carub.0004s1888 Capsella rubella HOM05D006384 ORTHO05D007917 5.9e-86 321.6 297 59.6
Lsat_1_v5_gn_1_52961 Lactuca sativa HOM05D006384 ORTHO05D007917 7.8e-86 321.2 297 60.6
PSO801G0099 Papaver somniferum HOM05D006384 ORTHO05D007917 7.8e-86 321.2 286 62.2
ATR0680G046 Amborella trichopoda HOM05D006384 ORTHO05D007917 1.3e-85 320.5 216 74.5
Phvul.001G178300 Phaseolus vulgaris HOM05D006384 ORTHO05D007917 2.3e-85 319.7 286 61.9
VMungo1383G1856 Vigna mungo HOM05D006384 ORTHO05D007917 1.1e-84 317.4 285 61.4
TPR.G9375 Trifolium pratense HOM05D006384 ORTHO05D007917 2.5e-84 316.2 284 61.3
CARHR131500 Cardamine hirsuta HOM05D006384 ORTHO05D007917 3.3e-84 315.8 295 57.6
PSO339G6114 Papaver somniferum HOM05D006384 ORTHO05D007917 7.3e-84 314.7 283 61.5
CSS0039092 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.2e-83 313.9 186 84.4
ECA248G2568 Erigeron canadensis HOM05D006384 ORTHO05D007917 4.7e-83 312.0 286 61.2
Ah.15g092420 Amaranthus hybridus HOM05D006384 ORTHO05D007917 5.2e-82 308.5 282 58.9
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 6.8e-82 308.1 228 68.4
Sed0012269 Sechium edule HOM05D006384 ORTHO05D007917 1.2e-81 307.4 297 58.2
Oeu016975.2 Olea europaea HOM05D006384 ORTHO05D007917 2.0e-81 306.6 274 62.0
Medtr7g101760 Medicago truncatula HOM05D006384 ORTHO05D007917 3.4e-81 305.8 288 59.0
DCAR_009302 Daucus carota HOM05D006384 ORTHO05D007917 9.8e-81 304.3 212 69.8
Aqoxy2G01819 Aquilegia oxysepala HOM05D006384 ORTHO05D007917 3.7e-80 302.4 220 70.5
Aa31LG5G22260 Aethionema arabicum HOM05D006384 ORTHO05D007917 6.4e-80 301.6 213 71.4
AUR62040461 Chenopodium quinoa HOM05D006384 ORTHO05D007917 3.2e-79 299.3 212 69.8
Hund20279 Selenicereus undatus HOM05D006384 ORTHO05D007917 1.6e-78 297.0 308 57.5
Os10g0443200 Oryza sativa ssp. japonica HOM05D006384 ORTHO05D007917 2.7e-78 296.2 227 65.6
VMungo1383G2663 Vigna mungo HOM05D006384 ORTHO05D007917 2.7e-78 296.2 286 58.4
HPP92_025998 Vanilla planifolia HOM05D006384 ORTHO05D007917 1.7e-77 293.5 236 64.4
CDE06G0314 Ceratophyllum demersum HOM05D006384 ORTHO05D007917 1.9e-76 290.0 211 67.3
Actinidia40017 Actinidia chinensis HOM05D006384 ORTHO05D007917 4.3e-76 288.9 231 68.8
EL10Ac7g16562 Beta vulgaris HOM05D006384 ORTHO05D007917 1.9e-71 273.5 287 54.4
PGR004G0408 Punica granatum HOM05D006384 ORTHO05D007917 1.4e-66 257.3 238 60.9
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 1.6e-62 243.8 211 56.9
Sc20g0001670 Simmondsia chinensis HOM05D006384 ORTHO05D007917 1.7e-61 240.4 209 58.9
FvH4_6g16140 Fragaria vesca HOM05D006384 ORTHO05D007917 5.2e-58 228.8 207 62.3
Cpa.g.c35130 Carica papaya HOM05D006384 ORTHO05D007917 8.9e-58 228.0 185 67.0
Mapoly0009s0045 Marchantia polymorpha HOM05D006384 ORTHO05D007917 1.2e-57 227.6 212 54.2
Manes.09G064200 Manihot esculenta HOM05D006384 ORTHO05D007917 2.6e-57 226.5 209 61.2
CSS0004677 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 2.9e-56 223.0 142 78.9
TAR623G0498 Trochodendron aralioides HOM05D001475 ORTHO05D001525 1.6e-54 217.2 141 80.1
AagrBONN_evm.TU.Sc2ySwM_117.2066 Anthoceros agrestis HOM05D006384 ORTHO05D007917 3.9e-53 212.6 212 49.1
Ciclev10013845m.g Citrus clementina HOM05D006384 ORTHO05D007917 1.1e-50 204.5 138 73.9
unitig_0.g684 Utricularia gibba HOM05D006384 ORTHO05D007917 2.4e-50 203.4 228 51.8
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 1.2e-49 201.1 228 45.6
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 9.9e-49 198.0 222 45.0
CSS0019463 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 2.4e-47 193.4 155 67.7
AUR62041978 Chenopodium quinoa HOM05D006384 ORTHO05D007917 3.3e-44 183.0 121 71.9
SMO197G0035 Selaginella moellendorffii HOM05D006384 ORTHO05D007917 2.4e-42 176.8 191 45.5
vmacro07280 Vaccinium macrocarpon HOM05D006384 ORTHO05D007917 1.2e-38 164.5 152 59.2
CSS0008908 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 9.3e-31 138.3 69 94.2
CSS0018803 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 9.3e-31 138.3 69 94.2
Ciclev10013192m.g Citrus clementina HOM05D006384 ORTHO05D007917 3.7e-27 126.3 67 86.6
PSO832G0438 Papaver somniferum HOM05D006384 ORTHO05D007917 1.1e-26 124.8 102 63.7
Glyma.03G182200 Glycine max HOM05D006384 ORTHO05D007917 4.0e-26 122.9 158 50.6
Zm00001eb222550 Zea mays HOM05D006384 ORTHO05D007917 1.6e-19 100.9 111 52.3
Cpa.g.sc2150.3 Carica papaya HOM05D006384 ORTHO05D007917 1.6e-14 84.3 65 72.3
Cfa026119 Carpinus fangiana HOM05D006384 ORTHO05D007917 1.3e-11 74.7 222 25.2
RcHm_v2.0_Chr4g0411411 Rosa chinensis HOM05D006384 ORTHO05D007917 7.7e-09 65.5 48 70.8
DCAR_017395 Daucus carota HOM05D006384 ORTHO05D007917 1.0e-08 65.1 45 62.2
MELO3C032679.2 Cucumis melo HOM05D006384 ORTHO05D007917 6.5e-08 62.4 58 60.3
TAR374G1213 Trochodendron aralioides HOM05D000928 ORTHO05D000023 8.5e-08 62.0 45 62.2
DCAR_032298 Daucus carota HOM05D006384 ORTHO05D007917 6.1e-06 55.8 45 60.0


User provided reference genes

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