Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 5.3e-273 943.7 474 100.0
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 4.2e-169 598.6 342 89.8
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 1.1e-148 530.8 341 79.5
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 2.9e-133 479.6 339 71.7
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 2.9e-133 479.6 339 71.7
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 5.2e-127 458.8 338 71.6
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 1.3e-125 454.1 349 67.0
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 9.2e-124 448.0 350 64.9
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 2.3e-122 443.4 341 65.4
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 1.9e-121 440.3 352 65.1
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 9.5e-121 438.0 335 66.9
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 8.1e-120 434.9 348 66.1
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 1.5e-118 430.6 342 65.2
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 3.4e-118 429.5 338 65.1
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 4.4e-118 429.1 338 64.8
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 5.8e-118 428.7 346 63.6
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 1.3e-117 427.6 338 65.1
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 1.7e-117 427.2 343 63.3
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 6.4e-117 425.2 341 65.7
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 1.1e-116 424.5 338 64.5
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 1.4e-116 424.1 339 64.3
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 1.9e-116 423.7 345 62.6
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 1.9e-116 423.7 360 63.3
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 2.4e-116 423.3 334 64.7
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 2.4e-116 423.3 337 65.0
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 1.2e-115 421.0 338 64.5
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 2.1e-115 420.2 338 64.2
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 2.7e-115 419.9 337 63.5
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 6.0e-115 418.7 347 63.7
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 7.8e-115 418.3 343 61.8
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.3e-114 417.5 336 66.1
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 1.7e-114 417.2 338 63.6
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 1.5e-113 414.1 337 65.3
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 2.8e-112 409.8 335 64.2
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 8.1e-112 408.3 351 62.1
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 2.4e-111 406.8 355 61.1
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 5.2e-111 405.6 330 61.5
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 2.0e-110 403.7 336 64.9
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 3.4e-110 402.9 337 64.4
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 1.3e-109 401.0 294 69.7
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 3.8e-109 399.4 340 60.0
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 1.1e-108 397.9 340 57.9
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 1.4e-108 397.5 340 60.3
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 4.1e-108 396.0 338 62.1
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 7.1e-108 395.2 396 55.3
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 2.7e-107 393.3 345 57.7
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 4.6e-107 392.5 319 63.9
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 3.0e-106 389.8 341 58.4
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 6.6e-106 388.7 341 58.4
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 1.9e-105 387.1 319 63.0
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 2.5e-105 386.7 350 56.0
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 7.3e-105 385.2 270 69.3
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 9.6e-105 384.8 340 58.5
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 1.2e-104 384.4 335 60.0
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.6e-104 384.0 340 58.2
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.8e-104 383.3 340 58.2
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 3.6e-104 382.9 332 59.9
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 4.7e-104 382.5 340 57.9
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 1.4e-103 380.9 339 59.0
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 1.8e-103 380.6 340 60.3
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 1.8e-103 380.6 347 57.6
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 3.1e-103 379.8 334 57.5
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 3.1e-103 379.8 340 57.4
AUR62040465 Chenopodium quinoa HOM05D004355 ORTHO05D005228 5.2e-103 379.0 270 67.8
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 1.2e-102 377.9 339 59.0
Eucgr.A01137 Eucalyptus grandis HOM05D004355 ORTHO05D005228 1.5e-102 377.5 260 70.8
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.5e-102 377.5 335 57.3
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 2.6e-102 376.7 324 60.5
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.6e-102 376.7 335 57.3
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 2.6e-102 376.7 308 64.9
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 4.4e-102 375.9 360 55.0
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 5.8e-102 375.6 442 49.3
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 7.6e-102 375.2 351 59.8
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 9.9e-102 374.8 324 60.8
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.3e-101 374.4 335 56.7
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 3.8e-101 372.9 336 57.1
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 4.9e-101 372.5 335 56.7
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 1.4e-100 370.9 341 55.4
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.9e-100 370.5 324 59.3
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 2.4e-100 370.2 338 56.5
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 3.2e-100 369.8 337 57.6
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 3.2e-100 369.8 315 61.0
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 1.3e-98 364.4 344 55.8
FAN14G0897 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.0e-98 363.2 298 62.1
FAN14G5907 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.0e-98 363.2 298 62.1
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 3.0e-98 363.2 366 51.9
RcHm_v2.0_Chr3g0469941 Rosa chinensis HOM05D004355 ORTHO05D005228 3.0e-98 363.2 302 61.3
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 3.9e-98 362.8 346 54.6
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 2.5e-97 360.1 268 63.4
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 4.3e-97 359.4 338 55.3
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 5.6e-97 359.0 338 55.3
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 1.6e-96 357.5 336 53.6
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 2.1e-96 357.1 338 55.0
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.1e-96 357.1 341 55.7
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.8e-96 356.7 341 56.0
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 1.1e-95 354.8 335 55.8
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 3.1e-95 353.2 282 61.0
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 3.1e-95 353.2 337 55.5
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.2e-94 351.3 336 56.0
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 5.8e-94 349.0 338 53.6
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 4.6e-91 339.3 332 53.3
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 6.0e-91 339.0 332 53.3
Lj2P114T36 Lonicera japonica HOM05D004355 ORTHO05D005228 1.3e-90 337.8 260 68.5
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.9e-89 334.0 342 49.4
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 1.9e-89 334.0 337 52.8
GSVIVG01025706001 Vitis vinifera HOM05D004355 ORTHO05D005228 2.8e-88 330.1 258 66.7
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 6.2e-88 328.9 344 52.9
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 1.5e-86 324.3 342 54.7
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 1.4e-84 317.8 337 51.0
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 4.6e-83 312.8 275 58.5
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 1.0e-82 311.6 336 52.4
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 3.9e-82 309.7 353 50.4
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 5.1e-82 309.3 292 56.8
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 3.3e-81 306.6 338 50.6
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 2.4e-79 300.4 230 64.3
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 2.5e-76 290.4 336 47.6
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 7.1e-76 288.9 337 46.0
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 1.2e-75 288.1 340 46.8
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 6.7e-74 282.3 339 46.3
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.1e-63 248.4 223 61.0
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 1.3e-61 241.5 343 40.2
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 6.5e-61 239.2 337 40.1
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 9.4e-60 235.3 249 50.2
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 3.0e-58 230.3 337 39.5
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 3.1e-55 220.3 319 43.3
Zm00001eb221710 Zea mays HOM05D004355 ORTHO05D005228 2.5e-44 184.1 260 42.7
Actinidia31337 Actinidia chinensis HOM05D004355 ORTHO05D005228 9.4e-44 182.2 145 63.4
ECA233G2931 Erigeron canadensis HOM05D004355 ORTHO05D005228 3.6e-43 180.3 218 43.6
Zm00001eb045770 Zea mays HOM05D004355 ORTHO05D005228 1.0e-42 178.7 259 42.9
Os10g0478400 Oryza sativa ssp. japonica HOM05D004355 ORTHO05D005228 3.3e-41 173.7 258 41.5
VMungo0540G2091 Vigna mungo HOM05D004355 ORTHO05D005228 3.7e-40 170.2 143 63.6
Dinv34489 Davidia involucrata HOM05D004355 ORTHO05D005228 8.2e-40 169.1 97 85.6
Dinv23629 Davidia involucrata HOM05D004355 ORTHO05D005228 7.0e-39 166.0 97 84.5
ATR0048G009 Amborella trichopoda HOM05D004355 ORTHO05D005228 4.5e-38 163.3 257 36.6
ECA233G2161 Erigeron canadensis HOM05D004355 ORTHO05D005228 3.6e-35 153.7 342 31.9
BcaB02g09308 Brassica carinata HOM05D004355 ORTHO05D005228 8.3e-32 142.5 166 48.2
FAN09G2758 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.7e-29 134.8 106 61.3
ECA233G3839 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.4e-26 125.2 247 33.2
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 1.2e-25 122.1 196 41.8
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 2.0e-25 121.3 196 40.8
Sc02g0001720 Simmondsia chinensis HOM05D004355 ORTHO05D005228 2.8e-24 117.5 99 59.6
Oeu045216.1 Olea europaea HOM05D004355 ORTHO05D005228 4.5e-22 110.2 277 30.0
SEGI_02022 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 8.6e-21 105.9 193 34.2
Oeu045217.1 Olea europaea HOM05D004355 ORTHO05D005228 5.6e-20 103.2 236 31.4
FAN05G0211 Fragaria x ananassa HOM05D034166 ORTHO05D034912 3.4e-17 94.0 105 44.8
MELO3C033472.2 Cucumis melo HOM05D034166 ORTHO05D034912 7.5e-17 92.8 75 54.7
SEGI_31737 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 3.7e-16 90.5 290 26.6
Oeu045215.1 Olea europaea HOM05D004355 ORTHO05D005228 1.1e-15 89.0 284 29.2
Dinv07786 Davidia involucrata HOM05D004355 ORTHO05D005228 1.9e-15 88.2 48 83.3
Dinv15971 Davidia involucrata HOM05D004355 ORTHO05D005228 1.6e-14 85.1 49 81.6
Dinv18225 Davidia involucrata HOM05D004355 ORTHO05D005228 1.6e-14 85.1 49 81.6
HPP92_015190 Vanilla planifolia HOM05D004355 ORTHO05D005228 3.5e-14 84.0 90 46.7
CsaV3_6G039750 Cucumis sativus L. HOM05D034166 ORTHO05D034912 6.0e-14 83.2 69 55.1
Nn2g11520 Nelumbo nucifera HOM05D004355 ORTHO05D005228 7.3e-12 76.3 102 45.1


User provided reference genes

Program Settings