Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37234 Davidia involucrata HOM05D002855 ORTHO05D029235 6.9e-287 989.9 501 100.0
CSS0016445 Camellia sinensis var. sinensis HOM05D002855 ORTHO05D004406 2.4e-114 416.8 449 53.0
TAR369G1034 Trochodendron aralioides HOM05D002855 ORTHO05D004406 2.3e-101 373.6 420 52.6
Actinidia14088 Actinidia chinensis HOM05D002855 ORTHO05D004406 8.9e-101 371.7 509 46.6
TAR623G1741 Trochodendron aralioides HOM05D002855 ORTHO05D004406 3.4e-100 369.8 441 50.1
Dinv18704 Davidia involucrata HOM05D002855 ORTHO05D004406 2.5e-95 353.6 387 52.2
TAR633G1422 Trochodendron aralioides HOM05D002855 ORTHO05D004406 7.3e-95 352.1 420 50.7
Hma1.2p1_0111F.1_g053510 Hydrangea macrophylla HOM05D002855 ORTHO05D029235 2.6e-92 343.6 422 48.6
Nn2g12814 Nelumbo nucifera HOM05D002855 ORTHO05D004406 1.7e-91 340.9 465 46.9
Nn2g10571 Nelumbo nucifera HOM05D002855 ORTHO05D004406 1.4e-85 321.2 458 45.0
Dinv32829 Davidia involucrata HOM05D002855 ORTHO05D004406 1.8e-85 320.9 463 45.8
MBI14_g42162_MAGBIO Magnolia biondii HOM05D002855 ORTHO05D004406 2.6e-84 317.0 464 45.7
Aqoxy4G03112 Aquilegia oxysepala HOM05D002855 ORTHO05D004406 2.9e-83 313.5 460 45.2
Prupe.6G088700 Prunus persica HOM05D002855 ORTHO05D004406 1.4e-82 311.2 473 45.2
QL01p035172 Quercus lobata HOM05D002855 ORTHO05D004406 1.9e-82 310.8 410 49.5
Manes.04G028200 Manihot esculenta HOM05D002855 ORTHO05D004406 2.4e-82 310.5 448 47.3
RcHm_v2.0_Chr5g0062031 Rosa chinensis HOM05D002855 ORTHO05D004406 2.7e-81 307.0 485 44.3
Cpa.g.sc139.9 Carica papaya HOM05D002855 ORTHO05D004406 2.3e-80 303.9 414 49.0
FAN21G1667 Fragaria x ananassa HOM05D002855 ORTHO05D004406 2.3e-80 303.9 477 43.2
Actinidia00807 Actinidia chinensis HOM05D002855 ORTHO05D004406 5.1e-80 302.8 452 44.0
FvH4_3g34430 Fragaria vesca HOM05D002855 ORTHO05D004406 5.1e-80 302.8 488 42.8
FAN11G1910 Fragaria x ananassa HOM05D002855 ORTHO05D004406 5.1e-80 302.8 488 42.8
FAN25G2944 Fragaria x ananassa HOM05D002855 ORTHO05D004406 5.1e-80 302.8 477 43.2
Rhsim01G0223400 Rhododendron simsii HOM05D002855 ORTHO05D004406 6.6e-80 302.4 452 44.2
Thecc.09G332800 Theobroma cacao HOM05D002855 ORTHO05D004406 6.6e-80 302.4 397 47.4
Lalb_Chr22g0350071 Lupinus albus HOM05D002855 ORTHO05D004406 1.1e-79 301.6 425 46.4
FAN16G1875 Fragaria x ananassa HOM05D002855 ORTHO05D004406 2.5e-79 300.4 478 43.5
MD03G1106200 Malus domestica HOM05D002855 ORTHO05D004406 2.5e-79 300.4 489 42.5
Cfa011411 Carpinus fangiana HOM05D002855 ORTHO05D004406 3.3e-79 300.1 445 46.1
Cc01_g11990 Coffea canephora HOM05D002855 ORTHO05D004406 7.3e-79 298.9 487 41.9
VMungo1080G0735 Vigna mungo HOM05D002855 ORTHO05D004406 7.3e-79 298.9 468 44.2
Glyma.13G330500 Glycine max HOM05D002855 ORTHO05D004406 9.5e-79 298.5 468 44.9
Haze_23986 Corylus avellana HOM05D002855 ORTHO05D004406 3.6e-78 296.6 445 46.7
Haze_23987 Corylus avellana HOM05D002855 ORTHO05D004406 3.6e-78 296.6 445 46.7
Glyma.15G043500 Glycine max HOM05D002855 ORTHO05D004406 3.6e-78 296.6 467 44.5
CANSAT54G2256 Cannabis sativa HOM05D002855 ORTHO05D004406 4.7e-78 296.2 462 44.8
Manes.11G137500 Manihot esculenta HOM05D002855 ORTHO05D004406 4.7e-78 296.2 412 47.1
Atru.chr3.3777 Acer truncatum HOM05D002855 ORTHO05D004406 3.1e-77 293.5 491 42.6
Ciclev10027686m.g Citrus clementina HOM05D002855 ORTHO05D004406 6.8e-77 292.4 398 47.2
Lj3g0004926 Lotus japonicus HOM05D002855 ORTHO05D004406 1.5e-76 291.2 463 45.4
MD11G1118300 Malus domestica HOM05D002855 ORTHO05D004406 2.0e-76 290.8 493 41.2
Phvul.L002003 Phaseolus vulgaris HOM05D002855 ORTHO05D004406 3.4e-76 290.0 463 44.5
Gohir.A03G036400 Gossypium hirsutum HOM05D002855 ORTHO05D004406 4.4e-76 289.7 464 42.2
Duzib168G0993 Durio zibethinus HOM05D002855 ORTHO05D004406 5.8e-76 289.3 464 43.5
GSVIVG01025574001 Vitis vinifera HOM05D002855 ORTHO05D009676 7.6e-76 288.9 478 42.1
MSTRG.18613 Avicennia marina HOM05D002855 ORTHO05D004406 9.9e-76 288.5 400 45.8
Actinidia37270 Actinidia chinensis HOM05D002855 ORTHO05D004406 1.7e-75 287.7 410 44.9
CSS0021829 Camellia sinensis var. sinensis HOM05D002855 ORTHO05D004406 2.2e-75 287.3 394 45.4
COL.COLO4_18410 Corchorus olitorius HOM05D002855 ORTHO05D004406 2.2e-75 287.3 458 42.4
Lalb_Chr22g0350101 Lupinus albus HOM05D002855 ORTHO05D004406 2.2e-75 287.3 467 45.2
Eucgr.B02434 Eucalyptus grandis HOM05D002855 ORTHO05D004406 2.9e-75 287.0 446 44.2
Gohir.D03G131800 Gossypium hirsutum HOM05D002855 ORTHO05D004406 8.3e-75 285.4 470 41.7
MBI05_g19645_MAGBIO Magnolia biondii HOM05D002855 ORTHO05D004406 8.3e-75 285.4 402 46.0
Potri.001G233800 Populus trichocarpa HOM05D002855 ORTHO05D004406 8.3e-75 285.4 445 44.9
arahy.Tifrunner.gnm1.ann1.3PXT9K Arachis hypogaea HOM05D002855 ORTHO05D004406 1.1e-74 285.0 469 43.9
Gorai.003G138700 Gossypium raimondii HOM05D002855 ORTHO05D004406 1.4e-74 284.6 464 42.0
TWI75G0055 Tripterygium wilfordii HOM05D002855 ORTHO05D004406 1.9e-74 284.3 486 42.2
Potri.009G026100 Populus trichocarpa HOM05D002855 ORTHO05D004406 5.4e-74 282.7 482 43.6
Sabra16G0140100 Salix brachista HOM05D002855 ORTHO05D004406 5.4e-74 282.7 445 46.1
CiPaw.13G102800 Carya illinoinensis HOM05D002855 ORTHO05D004406 7.1e-74 282.3 499 43.9
Nitab4.5_0002380g0080 Nicotiana tabacum HOM05D002855 ORTHO05D004406 7.1e-74 282.3 374 47.3
Medtr2g096000 Medicago truncatula HOM05D002855 ORTHO05D004406 9.2e-74 282.0 396 47.2
arahy.Tifrunner.gnm1.ann1.R78DWG Arachis hypogaea HOM05D002855 ORTHO05D004406 1.6e-73 281.2 466 43.1
Duzib170G0969 Durio zibethinus HOM05D002855 ORTHO05D004406 1.6e-73 281.2 464 42.5
Sed0021885 Sechium edule HOM05D002855 ORTHO05D004406 3.5e-73 280.0 421 43.9
CiPaw.13G103000 Carya illinoinensis HOM05D002855 ORTHO05D004406 1.3e-72 278.1 443 45.8
Hma1.2p1_0746F.1_g212280 Hydrangea macrophylla HOM05D002855 ORTHO05D004406 1.7e-72 277.7 479 39.9
Gorai.004G002400 Gossypium raimondii HOM05D002855 ORTHO05D004406 5.1e-72 276.2 460 42.0
TWI79G0463 Tripterygium wilfordii HOM05D002855 ORTHO05D004406 6.6e-72 275.8 487 41.7
Gohir.A05G099600 Gossypium hirsutum HOM05D002855 ORTHO05D004406 1.1e-71 275.0 401 44.4
Nitab4.5_0003784g0030 Nicotiana tabacum HOM05D002855 ORTHO05D004406 1.5e-71 274.6 397 44.6
Ca_01364_v3 Cicer arietinum L. HOM05D002855 ORTHO05D004406 1.9e-71 274.2 467 43.7
HPP92_001698 Vanilla planifolia HOM05D002855 ORTHO05D004406 1.9e-71 274.2 277 57.0
Gohir.D08G009200 Gossypium hirsutum HOM05D002855 ORTHO05D004406 3.3e-71 273.5 447 42.5
Rhsim01G0216000 Rhododendron simsii HOM05D002855 ORTHO05D004406 4.3e-71 273.1 232 60.3
Psat5g281800 Pisum sativum HOM05D002855 ORTHO05D004406 5.6e-71 272.7 470 42.6
Migut.D02157 Erythranthe guttata HOM05D002855 ORTHO05D004406 7.3e-71 272.3 404 41.8
Gohir.A08G000105 Gossypium hirsutum HOM05D002855 ORTHO05D004406 7.3e-71 272.3 460 42.4
Hma1.2p1_0111F.1_g053470 Hydrangea macrophylla HOM05D002855 ORTHO05D029235 7.3e-71 272.3 408 41.4
ClCG02G020560 Citrullus lanatus HOM05D002855 ORTHO05D004406 9.6e-71 271.9 395 45.1
CAN.G84.3 Capsicum annuum HOM05D002855 ORTHO05D004406 1.2e-70 271.6 375 46.4
TPR.G11598 Trifolium pratense HOM05D002855 ORTHO05D004406 1.2e-70 271.6 476 41.8
MELO3C025710.2 Cucumis melo HOM05D002855 ORTHO05D004406 1.6e-70 271.2 454 42.3
Gohir.D05G099500 Gossypium hirsutum HOM05D002855 ORTHO05D004406 2.1e-70 270.8 401 44.4
Oeu041006.2 Olea europaea HOM05D002855 ORTHO05D004406 1.4e-69 268.1 471 42.9
Sopen11g030480 Solanum pennellii HOM05D002855 ORTHO05D004406 1.4e-69 268.1 490 40.0
RhsimUnG0121200 Rhododendron simsii HOM05D002855 ORTHO05D004406 4.0e-69 266.5 291 51.5
PGSC0003DMG400015522 Solanum tuberosum HOM05D002855 ORTHO05D004406 4.0e-69 266.5 488 40.0
CsaV3_6G022000 Cucumis sativus L. HOM05D002855 ORTHO05D004406 8.9e-69 265.4 454 41.6
ECA248G3817 Erigeron canadensis HOM05D002855 ORTHO05D004406 8.9e-69 265.4 391 44.8
HanXRQChr04g0110371 Helianthus annuus HOM05D002855 ORTHO05D004406 8.9e-69 265.4 475 38.5
PSO384G0780 Papaver somniferum HOM05D002855 ORTHO05D004406 8.9e-69 265.4 391 44.5
Hund18948 Selenicereus undatus HOM05D002855 ORTHO05D004406 8.9e-69 265.4 470 40.2
Sabra09G0017300 Salix brachista HOM05D002855 ORTHO05D004406 3.4e-68 263.5 445 44.3
Lsat_1_v5_gn_5_166940 Lactuca sativa HOM05D002855 ORTHO05D004406 4.4e-68 263.1 334 47.9
SalBow3G0437 Salvia bowleyana HOM05D002855 ORTHO05D004406 1.3e-67 261.5 444 41.7
Gorai.009G103400 Gossypium raimondii HOM05D002855 ORTHO05D004406 2.9e-67 260.4 483 39.3
Hma1.2p1_0035F.1_g021730 Hydrangea macrophylla HOM05D002855 ORTHO05D004406 1.1e-66 258.5 493 38.9
Sc12g0001880 Simmondsia chinensis HOM05D002855 ORTHO05D004406 1.4e-66 258.1 490 38.0
AL5G24520 Arabidopsis lyrata HOM05D002855 ORTHO05D004406 7.1e-66 255.8 373 45.3
EL10Ac7g15933 Beta vulgaris HOM05D002855 ORTHO05D004406 1.7e-64 251.1 423 41.1
HPP92_000643 Vanilla planifolia HOM05D002855 ORTHO05D004406 2.3e-64 250.8 382 43.2
Duzib128G1501 Durio zibethinus HOM05D002855 ORTHO05D004406 3.0e-64 250.4 271 53.1
AUR62001859 Chenopodium quinoa HOM05D002855 ORTHO05D004406 3.9e-64 250.0 286 50.0
Solyc11g072810.2 Solanum lycopersicum HOM05D002855 ORTHO05D004406 5.1e-64 249.6 488 38.9
Carub.0005s1167 Capsella rubella HOM05D002855 ORTHO05D004406 6.6e-64 249.2 354 46.6
Thhalv10002373m.g Eutrema salsugineum HOM05D002855 ORTHO05D004406 8.7e-64 248.8 374 43.9
THA.LOC104810821 Tarenaya hassleriana HOM05D002855 ORTHO05D004406 4.3e-63 246.5 311 48.2
Migut.N02644 Erythranthe guttata HOM05D002855 ORTHO05D004406 7.3e-63 245.7 468 38.5
THA.LOC104814856 Tarenaya hassleriana HOM05D002855 ORTHO05D004406 7.3e-63 245.7 480 38.5
HanXRQChr14g0429221 Helianthus annuus HOM05D002855 ORTHO05D004406 1.6e-62 244.6 317 45.1
Sp5g15700 Schrenkiella parvula HOM05D002855 ORTHO05D004406 2.1e-62 244.2 379 42.2
Ciclev10011193m.g Citrus clementina HOM05D002855 ORTHO05D004406 4.8e-62 243.0 384 40.1
CDE02G2912 Ceratophyllum demersum HOM05D002855 ORTHO05D004406 8.1e-62 242.3 442 40.3
AUR62009654 Chenopodium quinoa HOM05D002855 ORTHO05D004406 8.1e-62 242.3 446 39.2
Peaxi162Scf00836g00219 Petunia axillaris HOM05D002855 ORTHO05D004406 8.1e-62 242.3 494 37.9
PGR102G1726 Punica granatum HOM05D002855 ORTHO05D004406 8.1e-62 242.3 450 39.3
Thecc.05G049900 Theobroma cacao HOM05D002855 ORTHO05D004406 1.4e-61 241.5 273 51.6
CARHR154140 Cardamine hirsuta HOM05D002855 ORTHO05D004406 2.4e-61 240.7 479 38.2
SGA_v2.0_scaffold194G40747 Striga asiatica HOM05D002855 ORTHO05D004406 2.4e-61 240.7 444 40.8
DCAR_018861 Daucus carota HOM05D002855 ORTHO05D004406 4.4e-60 236.5 439 39.2
AT3G45830 Arabidopsis thaliana HOM05D002855 ORTHO05D004406 5.8e-60 236.1 524 36.5
BcaB01g01053 Brassica carinata HOM05D002855 ORTHO05D004406 5.8e-60 236.1 312 46.2
unitig_899.g14902 Utricularia gibba HOM05D002855 ORTHO05D004406 5.8e-60 236.1 381 40.9
Zm00001eb265670 Zea mays HOM05D002855 ORTHO05D004406 2.2e-59 234.2 340 40.6
Zm00001eb355300 Zea mays HOM05D002855 ORTHO05D004406 1.1e-58 231.9 220 55.0
Os05g0117864 Oryza sativa ssp. japonica HOM05D002855 ORTHO05D004406 1.4e-58 231.5 240 53.8
CDE09G0123 Ceratophyllum demersum HOM05D002855 ORTHO05D004406 4.2e-58 229.9 451 39.5
BraA06t25210Z Brassica rapa HOM05D002855 ORTHO05D004406 2.1e-57 227.6 312 45.5
A06p21220 Brassica napus HOM05D002855 ORTHO05D004406 3.5e-57 226.9 312 45.5
Prupe.6G245300 Prunus persica HOM05D002855 ORTHO05D004406 3.5e-57 226.9 237 49.4
BolC3t19280H Brassica oleracea HOM05D002855 ORTHO05D004406 6.6e-56 222.6 260 49.6
Ah.08g215040 Amaranthus hybridus HOM05D002855 ORTHO05D004406 1.1e-55 221.9 294 44.9
PSO832G3558 Papaver somniferum HOM05D002855 ORTHO05D004406 2.5e-55 220.7 259 47.9
C03p70400 Brassica napus HOM05D002855 ORTHO05D004406 5.6e-55 219.5 260 49.2
BcaC01g01947 Brassica carinata HOM05D002855 ORTHO05D004406 7.3e-55 219.2 260 49.2
DCAR_018860 Daucus carota HOM05D002855 ORTHO05D004406 1.6e-54 218.0 534 34.5
ATR0594G221 Amborella trichopoda HOM05D002855 ORTHO05D004406 1.4e-53 214.9 458 37.3
COL.COLO4_10308 Corchorus olitorius HOM05D002855 ORTHO05D004406 1.8e-53 214.5 389 42.9
Nitab4.5_0011917g0020 Nicotiana tabacum HOM05D002855 ORTHO05D004406 1.8e-53 214.5 234 52.6
Nitab4.5_0000202g0400 Nicotiana tabacum HOM05D002855 ORTHO05D004406 5.3e-53 213.0 222 52.3
SHI05981 Sapria himalayana HOM05D002855 ORTHO05D004406 2.4e-50 204.1 232 47.0
SEGI_18775 Sequoiadendron giganteum HOM05D002855 ORTHO05D004406 1.3e-48 198.4 318 39.6
Peaxi162Scf00472g00082 Petunia axillaris HOM05D002855 ORTHO05D004406 1.6e-46 191.4 219 49.8
vmacro14495 Vaccinium macrocarpon HOM05D002855 ORTHO05D004406 6.9e-45 186.0 424 35.6
Gorai.001G248600 Gossypium raimondii HOM05D002855 ORTHO05D004406 1.4e-42 178.3 277 39.7
Atru.chr8.2509 Acer truncatum HOM05D002855 ORTHO05D004406 6.7e-40 169.5 310 36.8
Sc01g0003750 Simmondsia chinensis HOM05D002855 ORTHO05D004406 1.1e-39 168.7 226 44.2
Cc06_g03300 Coffea canephora HOM05D002855 ORTHO05D004406 7.4e-39 166.0 201 45.8
AUR62042292 Chenopodium quinoa HOM05D002855 ORTHO05D009012 2.4e-37 161.0 209 39.7
AUR62043938 Chenopodium quinoa HOM05D002855 ORTHO05D004406 2.4e-37 161.0 209 39.7
Pp3c17_22910 Physcomitrium patens HOM05D002855 ORTHO05D004406 3.1e-37 160.6 231 42.0
Lj3P975T65 Lonicera japonica HOM05D002855 ORTHO05D029235 4.1e-37 160.2 116 60.3
Gohir.D13G096325 Gossypium hirsutum HOM05D002855 ORTHO05D004406 2.5e-34 151.0 347 32.9
Mapoly0002s0042 Marchantia polymorpha HOM05D002855 ORTHO05D004406 1.8e-32 144.8 248 35.5
unitig_736.g22426 Utricularia gibba HOM05D002855 ORTHO05D004406 1.9e-31 141.4 315 38.7
AagrBONN_evm.TU.Sc2ySwM_228.4027 Anthoceros agrestis HOM05D002855 ORTHO05D004406 5.5e-26 123.2 334 29.0
vmacro20088 Vaccinium macrocarpon HOM05D002855 ORTHO05D004406 1.2e-20 105.5 134 42.5
Lj2P104T63 Lonicera japonica HOM05D002855 ORTHO05D004406 2.2e-19 101.3 92 47.8
Lalb_Chr14g0374891 Lupinus albus HOM05D002855 ORTHO05D004406 5.0e-19 100.1 350 33.1
Pp3c14_23790 Physcomitrium patens HOM05D002855 ORTHO05D004406 8.8e-08 62.8 61 47.5
vmacro14496 Vaccinium macrocarpon HOM05D002855 ORTHO05D004406 2.2e-06 58.2 35 71.4
unitig_736.g22427 Utricularia gibba HOM05D002855 ORTHO05D004406 4.8e-06 57.0 35 68.6
Actinidia07087 Actinidia chinensis HOM05D002855 ORTHO05D004406 6.3e-06 56.6 35 74.3
GSVIVG01025073001 Vitis vinifera HOM05D002855 ORTHO05D004406 8.2e-06 56.2 306 28.1


User provided reference genes

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