Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 1.4e-113 412.9 198 100.0
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 9.6e-59 230.7 146 73.3
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 5.3e-57 224.9 190 60.0
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 2.0e-56 223.0 170 66.5
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 1.7e-55 219.9 193 57.5
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 3.8e-55 218.8 147 70.7
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 5.0e-55 218.4 139 71.2
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 1.1e-54 217.2 169 65.1
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 1.2e-53 213.8 146 67.1
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 1.6e-53 213.4 140 71.4
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 2.7e-53 212.6 139 69.8
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 3.5e-53 212.2 146 66.4
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 4.6e-53 211.8 139 69.1
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 6.1e-53 211.5 193 61.1
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 2.3e-52 209.5 139 70.5
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 3.0e-52 209.1 144 69.4
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 5.1e-52 208.4 138 70.3
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 6.7e-52 208.0 146 66.4
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 1.1e-51 207.2 146 65.1
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 3.3e-51 205.7 185 57.3
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 7.4e-51 204.5 142 67.6
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 9.7e-51 204.1 167 59.9
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 9.7e-51 204.1 185 57.8
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 1.6e-50 203.4 146 68.5
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 2.8e-50 202.6 139 67.6
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 2.8e-50 202.6 146 63.7
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 1.4e-49 200.3 139 68.3
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 2.4e-49 199.5 147 67.3
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 6.9e-49 198.0 161 59.6
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 1.2e-48 197.2 169 56.8
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 1.5e-48 196.8 184 56.5
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 2.0e-48 196.4 139 66.9
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 7.7e-48 194.5 139 66.2
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 1.0e-47 194.1 149 62.4
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 1.3e-47 193.7 142 63.4
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 3.8e-47 192.2 141 61.7
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 6.5e-47 191.4 147 62.6
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 8.5e-47 191.0 141 61.7
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 1.1e-46 190.7 167 58.1
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 1.4e-46 190.3 139 63.3
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 1.9e-46 189.9 191 53.9
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 2.5e-46 189.5 141 58.9
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 4.2e-46 188.7 148 60.1
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 5.5e-46 188.3 186 53.2
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 7.2e-46 188.0 144 62.5
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 9.4e-46 187.6 139 61.2
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 9.4e-46 187.6 147 61.2
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 1.6e-45 186.8 147 59.9
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 2.7e-45 186.0 154 59.1
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 2.7e-45 186.0 146 59.6
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 3.6e-45 185.7 139 60.4
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 7.9e-45 184.5 139 62.6
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 1.8e-44 183.3 144 61.1
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 2.3e-44 183.0 139 59.7
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 2.3e-44 183.0 196 50.5
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 2.3e-44 183.0 141 60.3
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 5.1e-44 181.8 141 60.3
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 5.1e-44 181.8 164 53.7
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 1.5e-43 180.3 139 63.3
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 2.0e-43 179.9 183 52.5
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 3.3e-43 179.1 140 61.4
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 4.3e-43 178.7 102 80.4
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 4.3e-43 178.7 193 50.3
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 4.3e-43 178.7 139 59.7
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 1.7e-42 176.8 141 58.9
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 6.3e-42 174.9 142 59.9
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 6.3e-42 174.9 153 54.2
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 8.2e-42 174.5 140 57.9
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 1.4e-41 173.7 164 51.2
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 1.4e-41 173.7 148 53.4
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 1.4e-41 173.7 144 56.9
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 1.5e-40 170.2 174 50.0
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 1.5e-40 170.2 175 51.4
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 2.0e-40 169.9 138 60.9
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 5.9e-40 168.3 139 59.0
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 7.7e-40 167.9 139 59.0
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 1.3e-39 167.2 163 49.1
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 2.2e-39 166.4 137 56.9
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 5.0e-39 165.2 202 46.5
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 6.5e-39 164.9 168 49.4
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 6.5e-39 164.9 138 57.2
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 8.5e-39 164.5 140 57.9
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 1.1e-38 164.1 140 61.4
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 1.4e-38 163.7 140 58.6
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 1.4e-38 163.7 140 58.6
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.4e-38 163.7 140 58.6
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 2.5e-38 162.9 140 57.9
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 2.5e-38 162.9 140 58.6
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 2.5e-38 162.9 140 57.9
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 3.2e-38 162.5 140 57.1
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 4.2e-38 162.2 135 56.3
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 4.2e-38 162.2 140 55.0
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 5.5e-38 161.8 140 55.0
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 7.2e-38 161.4 140 57.1
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 7.2e-38 161.4 148 52.7
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 7.2e-38 161.4 171 48.5
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 1.2e-37 160.6 174 50.6
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 1.6e-37 160.2 184 47.8
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.6e-37 160.2 157 53.5
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 1.6e-37 160.2 140 57.1
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 2.7e-37 159.5 140 57.1
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 4.7e-37 158.7 140 57.1
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 6.1e-37 158.3 174 50.0
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 6.1e-37 158.3 133 57.1
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 6.1e-37 158.3 140 58.6
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 7.9e-37 157.9 134 54.5
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 1.0e-36 157.5 138 55.8
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.0e-36 157.5 138 55.8
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 1.0e-36 157.5 157 52.9
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 1.4e-36 157.1 139 51.8
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.8e-36 156.8 142 54.2
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 3.0e-36 156.0 186 46.8
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 3.9e-36 155.6 150 55.3
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 8.8e-36 154.5 190 44.7
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 1.1e-35 154.1 150 55.3
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.1e-35 154.1 148 52.7
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 2.0e-35 153.3 162 46.3
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 3.3e-35 152.5 157 52.2
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 3.3e-35 152.5 139 54.0
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 7.4e-35 151.4 79 83.5
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 9.7e-35 151.0 143 49.7
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 3.7e-34 149.1 155 49.7
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 4.8e-34 148.7 140 50.7
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 6.3e-34 148.3 146 51.4
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 8.2e-34 147.9 140 52.1
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 1.1e-33 147.5 162 50.0
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 1.4e-33 147.1 139 55.4
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 2.4e-33 146.4 145 54.5
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 7.7e-32 141.4 141 50.4
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 3.2e-30 136.0 145 45.5
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 1.6e-29 133.7 158 42.4
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 2.7e-29 132.9 145 45.5
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 6.1e-29 131.7 144 46.5
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 3.0e-28 129.4 177 40.7
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 3.0e-28 129.4 145 43.4
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 4.0e-28 129.0 143 44.8
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 5.2e-28 128.6 140 48.6
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 5.2e-28 128.6 140 47.9
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 1.1e-27 127.5 140 47.9
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.1e-27 127.5 147 46.3
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 2.0e-27 126.7 144 46.5
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 2.6e-27 126.3 138 48.6
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 4.4e-27 125.6 142 43.0
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 4.4e-27 125.6 140 47.9
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 9.7e-27 124.4 117 53.0
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 2.2e-26 123.2 148 48.6
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 4.8e-26 122.1 142 43.0
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 6.3e-26 121.7 140 42.9
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 8.2e-26 121.3 136 44.9
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 8.2e-26 121.3 136 44.9
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 3.5e-24 115.9 172 38.4
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 1.7e-23 113.6 139 44.6
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.7e-23 113.6 119 43.7
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 3.8e-23 112.5 151 43.0
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 6.5e-23 111.7 139 43.9
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 6.5e-23 111.7 68 70.6
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 4.2e-22 109.0 146 41.8
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 4.2e-22 109.0 146 41.8
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 4.7e-21 105.5 139 43.9
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 1.4e-20 104.0 176 36.9
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 8.8e-20 101.3 74 62.2
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 1.5e-19 100.5 138 42.8
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 1.4e-17 94.0 104 44.2
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.0e-15 87.8 150 34.7
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 3.0e-12 76.3 110 38.2
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 3.0e-12 76.3 59 59.3
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 5.2e-12 75.5 78 47.4
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 1.7e-10 70.5 110 36.4
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 7.0e-09 65.1 58 48.3
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 2.0e-08 63.5 52 50.0
HPP92_026989 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.3e-07 60.8 59 47.5
Zm00001eb341480 Zea mays HOM05D014943 ORTHO05D019389 8.6e-07 58.2 58 43.1
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 5.6e-06 55.5 71 43.7


User provided reference genes

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