Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 2.1e-189 665.6 350 100.0
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 3.6e-165 585.1 346 89.9
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 4.1e-153 545.0 345 83.8
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 5.0e-151 538.1 346 82.7
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 8.5e-151 537.3 346 83.5
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 1.1e-150 537.0 345 82.9
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 2.5e-150 535.8 324 88.0
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 2.5e-150 535.8 384 76.3
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 2.5e-150 535.8 346 82.9
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 4.2e-150 535.0 346 82.9
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 6.1e-149 531.2 345 81.2
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 4.0e-148 528.5 340 81.2
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 3.3e-147 525.4 346 78.3
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 2.8e-146 522.3 347 79.8
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 6.3e-146 521.2 345 80.0
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 3.1e-145 518.8 341 81.8
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 7.0e-145 517.7 345 79.7
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 3.5e-144 515.4 357 78.4
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 4.5e-144 515.0 347 78.7
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 4.5e-144 515.0 350 80.0
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 7.7e-144 514.2 346 78.3
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.7e-143 513.1 312 86.9
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 2.9e-143 512.3 333 83.2
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 8.5e-143 510.8 353 76.8
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 8.5e-143 510.8 346 77.5
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 1.1e-142 510.4 346 79.8
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 1.1e-142 510.4 345 78.3
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 3.2e-142 508.8 333 82.6
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 3.2e-142 508.8 348 79.0
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 1.2e-141 506.9 345 78.0
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 2.7e-141 505.8 343 79.3
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 4.7e-141 505.0 347 77.8
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 8.0e-141 504.2 320 82.8
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 8.0e-141 504.2 347 77.5
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 1.4e-140 503.4 357 77.3
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 2.3e-140 502.7 347 76.9
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 2.3e-140 502.7 345 76.8
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 5.2e-140 501.5 347 77.2
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 6.8e-140 501.1 352 77.6
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 8.8e-140 500.7 345 78.3
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 1.2e-139 500.4 345 78.0
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 2.6e-139 499.2 345 78.8
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 3.4e-139 498.8 347 78.7
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 7.5e-139 497.7 384 72.7
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 7.5e-139 497.7 366 75.1
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 1.3e-138 496.9 345 77.7
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 1.7e-138 496.5 345 76.8
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 3.7e-138 495.4 345 77.4
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 6.3e-138 494.6 346 77.2
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 1.8e-137 493.0 351 76.4
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 1.8e-137 493.0 347 76.9
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 7.0e-137 491.1 351 74.6
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 9.1e-137 490.7 364 75.5
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 1.2e-136 490.3 345 76.5
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 4.5e-136 488.4 340 75.6
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 4.5e-136 488.4 344 76.2
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 5.9e-136 488.0 345 75.4
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 5.9e-136 488.0 341 78.0
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 7.7e-136 487.6 345 77.4
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 1.0e-135 487.3 339 75.2
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 1.3e-135 486.9 347 74.6
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 3.8e-135 485.3 351 75.8
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 3.8e-135 485.3 345 76.8
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 5.0e-135 485.0 340 77.9
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 8.6e-135 484.2 345 73.9
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 1.1e-134 483.8 345 75.1
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 1.1e-134 483.8 347 74.6
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 1.5e-134 483.4 351 75.2
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 1.9e-134 483.0 319 81.2
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 7.2e-134 481.1 340 75.9
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 1.6e-133 479.9 339 75.8
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 3.6e-133 478.8 339 76.1
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 3.0e-132 475.7 319 78.4
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 5.2e-132 474.9 339 74.3
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 5.2e-132 474.9 339 74.3
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 5.2e-132 474.9 340 75.0
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 8.9e-132 474.2 339 74.6
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 3.4e-131 472.2 339 74.3
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 3.4e-131 472.2 427 63.7
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 4.4e-131 471.9 344 74.1
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 7.5e-131 471.1 318 78.0
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 7.5e-131 471.1 319 76.5
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 9.8e-131 470.7 344 73.3
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 9.8e-131 470.7 339 73.5
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 1.3e-130 470.3 339 73.7
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 1.7e-130 469.9 339 73.5
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 2.2e-130 469.5 339 73.5
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 3.7e-130 468.8 353 72.2
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 1.8e-129 466.5 340 73.2
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 2.4e-129 466.1 347 71.5
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 3.1e-129 465.7 339 73.5
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 5.4e-129 464.9 338 74.3
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 5.4e-129 464.9 345 75.4
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 5.4e-129 464.9 292 85.3
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 7.0e-129 464.5 339 73.7
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 1.2e-128 463.8 338 73.7
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 2.8e-125 452.6 325 76.0
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 7.5e-123 444.5 403 62.5
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 1.4e-121 440.3 313 77.0
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 1.9e-121 439.9 302 75.8
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 1.7e-119 433.3 274 84.3
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 2.8e-117 426.0 281 81.1
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 9.8e-115 417.5 251 88.4
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 9.2e-113 411.0 297 72.1
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 2.3e-108 396.4 299 69.2
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 3.1e-108 396.0 345 67.0
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 1.3e-106 390.6 298 68.8
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 3.9e-103 379.0 316 66.1
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 7.3e-102 374.8 261 75.1
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 1.9e-97 360.1 241 81.7
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 2.5e-94 349.7 347 62.8
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 3.6e-93 345.9 236 80.5
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 1.9e-86 323.6 307 58.0
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 2.8e-77 293.1 291 58.4
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 1.8e-76 290.4 235 66.4
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 1.1e-73 281.2 205 70.2
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 1.4e-73 280.8 311 54.7
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 4.6e-72 275.8 329 52.3
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.8e-68 263.8 182 81.3
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 3.9e-39 166.4 149 61.7
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 3.7e-37 159.8 137 64.2
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 3.7e-37 159.8 137 64.2
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 3.0e-31 140.2 154 57.8
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 4.4e-30 136.3 100 70.0
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 2.8e-29 133.7 104 70.2
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 6.3e-29 132.5 77 89.6
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 6.3e-29 132.5 306 35.6
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 1.9e-25 120.9 92 68.5
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 7.5e-22 109.0 63 87.3
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 3.7e-21 106.7 65 83.1
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 4.8e-21 106.3 120 55.8
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 4.5e-19 99.8 120 53.3
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 2.3e-18 97.4 120 52.5
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 6.8e-15 85.9 74 58.1
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 8.9e-15 85.5 74 58.1
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 1.5e-14 84.7 91 57.1
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 7.5e-14 82.4 133 42.9
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 9.8e-14 82.0 131 42.7
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 9.8e-14 82.0 71 62.0
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 2.2e-13 80.9 133 42.1
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 2.2e-13 80.9 133 42.1
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 2.2e-13 80.9 133 42.1
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 2.8e-13 80.5 133 42.1
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 3.7e-13 80.1 133 41.4
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 4.9e-13 79.7 133 42.1
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 6.3e-13 79.3 106 48.1
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 5.4e-12 76.3 106 45.3
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 2.0e-11 74.3 80 52.5
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 4.5e-11 73.2 135 40.7
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 1.0e-10 72.0 63 60.3
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 1.7e-10 71.2 64 59.4
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 1.6e-08 64.7 76 51.3
AUR62005065 Chenopodium quinoa HOM05D018411 ORTHO05D021565 2.8e-08 63.9 64 50.0
CARHR249580 Cardamine hirsuta HOM05D004269 ORTHO05D021565 1.4e-07 61.6 47 68.1
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 2.3e-07 60.8 45 66.7
BcaC07g37638 Brassica carinata HOM05D004269 ORTHO05D016737 8.9e-07 58.9 39 71.8
Lsat_1_v5_gn_3_20180 Lactuca sativa HOM05D000819 ORTHO05D000661 9.8e-06 55.5 63 55.6


User provided reference genes

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