Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37171 Davidia involucrata HOM05D003862 ORTHO05D004398 2.5e-33 144.8 70 100.0
Rhsim05G0192800 Rhododendron simsii HOM05D003862 ORTHO05D004398 1.8e-28 128.6 64 95.3
CSS0028919 Camellia sinensis var. sinensis HOM05D003862 ORTHO05D004398 3.1e-28 127.9 62 98.4
CSS0038231 Camellia sinensis var. sinensis HOM05D003862 ORTHO05D004398 3.1e-28 127.9 62 98.4
Oeu014415.1 Olea europaea HOM05D003862 ORTHO05D004398 3.1e-28 127.9 62 98.4
Oeu032100.1 Olea europaea HOM05D003862 ORTHO05D004398 3.1e-28 127.9 62 98.4
vmacro08654 Vaccinium macrocarpon HOM05D003862 ORTHO05D004398 3.1e-28 127.9 62 96.8
vmacro20157 Vaccinium macrocarpon HOM05D003862 ORTHO05D004398 3.1e-28 127.9 62 98.4
Cc10_g12100 Coffea canephora HOM05D003862 ORTHO05D004398 6.9e-28 126.7 62 96.8
Migut.D00467 Erythranthe guttata HOM05D003862 ORTHO05D004398 9.1e-28 126.3 62 96.8
SalBow5G2575 Salvia bowleyana HOM05D003862 ORTHO05D004398 1.5e-27 125.6 62 95.2
Dinv17003 Davidia involucrata HOM05D003862 ORTHO05D004398 2.6e-27 124.8 62 95.2
Dinv42952 Davidia involucrata HOM05D003862 ORTHO05D004398 2.6e-27 124.8 62 95.2
Dinv43148 Davidia involucrata HOM05D003862 ORTHO05D004398 2.6e-27 124.8 62 95.2
TAR636G2804 Trochodendron aralioides HOM05D003862 ORTHO05D004398 2.6e-27 124.8 62 95.2
Lsat_1_v5_gn_4_177081 Lactuca sativa HOM05D003862 ORTHO05D004398 3.4e-27 124.4 62 93.5
Lsat_1_v5_gn_5_170681 Lactuca sativa HOM05D003862 ORTHO05D004398 3.4e-27 124.4 62 93.5
unitig_21.g20465 Utricularia gibba HOM05D003164 ORTHO05D003575 3.4e-27 124.4 61 93.4
Hma1.2p1_0936F.1_g238710 Hydrangea macrophylla HOM05D003862 ORTHO05D004398 4.5e-27 124.0 62 93.5
Hma1.2p1_1513F.1_g287975 Hydrangea macrophylla HOM05D003862 ORTHO05D004398 4.5e-27 124.0 62 93.5
unitig_744.g24379 Utricularia gibba HOM05D003862 ORTHO05D004398 4.5e-27 124.0 61 91.8
Nitab4.5_0000349g0310 Nicotiana tabacum HOM05D003862 ORTHO05D004398 5.9e-27 123.6 62 93.5
Nitab4.5_0001911g0090 Nicotiana tabacum HOM05D003862 ORTHO05D004398 5.9e-27 123.6 62 93.5
Os12g0571200 Oryza sativa ssp. japonica HOM05D003862 ORTHO05D004398 5.9e-27 123.6 62 93.5
MBI05_g22042_MAGBIO Magnolia biondii HOM05D003862 ORTHO05D004398 7.7e-27 123.2 62 93.5
TAR369G0814 Trochodendron aralioides HOM05D003862 ORTHO05D004398 7.7e-27 123.2 62 93.5
DCAR_030095 Daucus carota HOM05D003862 ORTHO05D004398 1.0e-26 122.9 62 95.2
EL10Ac5g11591 Beta vulgaris HOM05D003862 ORTHO05D004398 1.3e-26 122.5 62 91.9
HanXRQChr05g0136091 Helianthus annuus HOM05D003862 ORTHO05D004398 1.3e-26 122.5 61 93.4
Peaxi162Scf00330g00415 Petunia axillaris HOM05D003862 ORTHO05D004398 1.3e-26 122.5 62 91.9
PSO063G5647 Papaver somniferum HOM05D003862 ORTHO05D004398 1.7e-26 122.1 61 91.8
PSO339G2698 Papaver somniferum HOM05D003862 ORTHO05D004398 1.7e-26 122.1 61 91.8
PSO384G2795 Papaver somniferum HOM05D003862 ORTHO05D004398 1.7e-26 122.1 61 91.8
CDE07G2069 Ceratophyllum demersum HOM05D003862 ORTHO05D004398 2.2e-26 121.7 75 82.7
Migut.D01636 Erythranthe guttata HOM05D003862 ORTHO05D004398 2.2e-26 121.7 62 91.9
Sc20g0004910 Simmondsia chinensis HOM05D003862 ORTHO05D004398 2.2e-26 121.7 62 93.5
GSVIVG01024961001 Vitis vinifera HOM05D003862 ORTHO05D004398 2.2e-26 121.7 75 81.3
Nn2g14532 Nelumbo nucifera HOM05D003862 ORTHO05D004398 2.9e-26 121.3 62 93.5
CAN.G1195.10 Capsicum annuum HOM05D003862 ORTHO05D004398 3.8e-26 120.9 62 90.3
Nitab4.5_0006455g0030 Nicotiana tabacum HOM05D003862 ORTHO05D004398 3.8e-26 120.9 62 91.9
Solyc10g086510.2 Solanum lycopersicum HOM05D003862 ORTHO05D004398 3.8e-26 120.9 62 90.3
Sopen10g035890 Solanum pennellii HOM05D003862 ORTHO05D004398 3.8e-26 120.9 62 90.3
PGSC0003DMG400019201 Solanum tuberosum HOM05D003862 ORTHO05D004398 3.8e-26 120.9 62 90.3
Cfa017379 Carpinus fangiana HOM05D003862 ORTHO05D004398 5.0e-26 120.6 62 93.5
CiPaw.09G192600 Carya illinoinensis HOM05D003862 ORTHO05D004398 5.0e-26 120.6 62 93.5
Haze_20791 Corylus avellana HOM05D003862 ORTHO05D004398 5.0e-26 120.6 62 93.5
Hund10643 Selenicereus undatus HOM05D003862 ORTHO05D004398 5.0e-26 120.6 62 91.9
Nitab4.5_0002018g0010 Nicotiana tabacum HOM05D003862 ORTHO05D004398 6.5e-26 120.2 62 90.3
HPP92_018126 Vanilla planifolia HOM05D003862 ORTHO05D004398 6.5e-26 120.2 62 91.9
HPP92_018144 Vanilla planifolia HOM05D003862 ORTHO05D004398 6.5e-26 120.2 62 91.9
Phvul.011G064100 Phaseolus vulgaris HOM05D003862 ORTHO05D004398 1.1e-25 119.4 62 91.9
Prupe.6G077400 Prunus persica HOM05D003862 ORTHO05D004398 1.1e-25 119.4 62 91.9
AUR62038108 Chenopodium quinoa HOM05D003862 ORTHO05D004398 1.4e-25 119.0 62 90.3
QL07p048307 Quercus lobata HOM05D003862 ORTHO05D004398 1.4e-25 119.0 64 89.1
GSVIVG01034172001 Vitis vinifera HOM05D003862 ORTHO05D004398 1.4e-25 119.0 62 91.9
Ah.02g115390 Amaranthus hybridus HOM05D003862 ORTHO05D004398 1.9e-25 118.6 62 88.7
Lalb_Chr03g0026631 Lupinus albus HOM05D003862 ORTHO05D004398 1.9e-25 118.6 62 90.3
Lalb_Chr19g0137831 Lupinus albus HOM05D003862 ORTHO05D004398 1.9e-25 118.6 62 90.3
Sed0018689 Sechium edule HOM05D003862 ORTHO05D004398 1.9e-25 118.6 62 91.9
CAN.G326.7 Capsicum annuum HOM05D003862 ORTHO05D004398 2.5e-25 118.2 62 87.1
ClCG10G021140 Citrullus lanatus HOM05D003862 ORTHO05D004398 2.5e-25 118.2 62 90.3
MELO3C009258.2 Cucumis melo HOM05D003862 ORTHO05D004398 2.5e-25 118.2 62 90.3
CsaV3_3G034900 Cucumis sativus L. HOM05D003862 ORTHO05D004398 2.5e-25 118.2 62 90.3
CANSAT54G2947 Cannabis sativa HOM05D003862 ORTHO05D004398 3.2e-25 117.9 62 90.3
Glyma.11G139400 Glycine max HOM05D003862 ORTHO05D004398 3.2e-25 117.9 62 90.3
Lj3g0018643 Lotus japonicus HOM05D003862 ORTHO05D004398 3.2e-25 117.9 62 90.3
MD04G1129100 Malus domestica HOM05D003862 ORTHO05D004398 3.2e-25 117.9 62 90.3
Cfa011504 Carpinus fangiana HOM05D003862 ORTHO05D004398 4.2e-25 117.5 62 90.3
ECA248G1530 Erigeron canadensis HOM05D003862 ORTHO05D004398 4.2e-25 117.5 62 87.1
FvH4_3g36110 Fragaria vesca HOM05D003862 ORTHO05D004398 4.2e-25 117.5 61 90.2
FAN11G3597 Fragaria x ananassa HOM05D003862 ORTHO05D004398 4.2e-25 117.5 61 90.2
FAN16G1598 Fragaria x ananassa HOM05D003862 ORTHO05D004398 4.2e-25 117.5 61 90.2
FAN21G0907 Fragaria x ananassa HOM05D003862 ORTHO05D004398 4.2e-25 117.5 61 90.2
FAN25G1864 Fragaria x ananassa HOM05D003862 ORTHO05D004398 4.2e-25 117.5 61 90.2
Glyma.12G063000 Glycine max HOM05D003862 ORTHO05D004398 4.2e-25 117.5 62 90.3
MD11G1108200 Malus domestica HOM05D003862 ORTHO05D004398 4.2e-25 117.5 62 90.3
Potri.012G039100 Populus trichocarpa HOM05D003862 ORTHO05D004398 4.2e-25 117.5 61 88.5
RcHm_v2.0_Chr5g0064531 Rosa chinensis HOM05D003862 ORTHO05D004398 4.2e-25 117.5 62 90.3
Sabra12G0027600 Salix brachista HOM05D003862 ORTHO05D004398 4.2e-25 117.5 61 88.5
AUR62025808 Chenopodium quinoa HOM05D003862 ORTHO05D004398 5.5e-25 117.1 62 88.7
Haze_24096 Corylus avellana HOM05D003862 ORTHO05D004398 5.5e-25 117.1 61 90.2
MD12G1141800 Malus domestica HOM05D003862 ORTHO05D004398 5.5e-25 117.1 62 90.3
Actinidia11257 Actinidia chinensis HOM05D003862 ORTHO05D004398 7.2e-25 116.7 62 93.5
Prupe.6G255300 Prunus persica HOM05D003862 ORTHO05D004398 7.2e-25 116.7 62 88.7
Sed0022625 Sechium edule HOM05D003862 ORTHO05D004398 7.2e-25 116.7 62 90.3
Ca_19161_v3 Cicer arietinum L. HOM05D003862 ORTHO05D004398 9.4e-25 116.3 62 88.7
CiPaw.14G068400 Carya illinoinensis HOM05D003862 ORTHO05D004398 1.2e-24 115.9 62 88.7
Peaxi162Scf01517g00013 Petunia axillaris HOM05D003862 ORTHO05D004398 1.2e-24 115.9 62 87.1
QL01p031927 Quercus lobata HOM05D003862 ORTHO05D004398 1.2e-24 115.9 61 88.5
arahy.Tifrunner.gnm1.ann1.PAA8CG Arachis hypogaea HOM05D003862 ORTHO05D004398 1.6e-24 115.5 62 87.1
arahy.Tifrunner.gnm1.ann1.Q4VW5J Arachis hypogaea HOM05D003862 ORTHO05D004398 1.6e-24 115.5 62 87.1
Medtr4g063925 Medicago truncatula HOM05D003862 ORTHO05D004398 1.6e-24 115.5 62 88.7
TPR.G14480 Trifolium pratense HOM05D003862 ORTHO05D004398 1.6e-24 115.5 62 88.7
TPR.G17728 Trifolium pratense HOM05D003862 ORTHO05D004398 1.6e-24 115.5 62 88.7
PGR119G1270 Punica granatum HOM05D003862 ORTHO05D004398 2.1e-24 115.2 62 87.1
TWI36G0288 Tripterygium wilfordii HOM05D003862 ORTHO05D004398 2.1e-24 115.2 62 88.7
PGR102G0842 Punica granatum HOM05D003862 ORTHO05D004398 2.7e-24 114.8 62 87.1
TWI75G0870 Tripterygium wilfordii HOM05D003862 ORTHO05D004398 2.7e-24 114.8 62 87.1
Cfa016018 Carpinus fangiana HOM05D000273 ORTHO05D004398 3.6e-24 114.4 61 88.5
Sc05g0009640 Simmondsia chinensis HOM05D003862 ORTHO05D004398 6.1e-24 113.6 62 85.5
AagrBONN_evm.TU.Sc2ySwM_368.1516 Anthoceros agrestis HOM05D003862 ORTHO05D004398 7.9e-24 113.2 62 83.9
TWI31G1113 Tripterygium wilfordii HOM05D003862 ORTHO05D004398 7.9e-24 113.2 62 87.1
Pp3c24_15930 Physcomitrium patens HOM05D003862 ORTHO05D004398 1.0e-23 112.8 75 74.7
Gohir.D13G233100 Gossypium hirsutum HOM05D003862 ORTHO05D004398 1.4e-23 112.5 62 85.5
Gorai.013G263900 Gossypium raimondii HOM05D003862 ORTHO05D004398 1.4e-23 112.5 62 85.5
Carub.0003s2691 Capsella rubella HOM05D003862 ORTHO05D004398 1.8e-23 112.1 62 85.5
Cpa.g.sc81.150 Carica papaya HOM05D003862 ORTHO05D004398 1.8e-23 112.1 62 87.1
Duzib150G0578 Durio zibethinus HOM05D003862 ORTHO05D004398 2.3e-23 111.7 62 85.5
Thhalv10002743m.g Eutrema salsugineum HOM05D003862 ORTHO05D004398 2.3e-23 111.7 62 85.5
Sp2g01740 Schrenkiella parvula HOM05D003862 ORTHO05D004398 2.3e-23 111.7 62 85.5
AT3G46560 Arabidopsis thaliana HOM05D003862 ORTHO05D004398 3.0e-23 111.3 62 85.5
Carub.0005s1283 Capsella rubella HOM05D003862 ORTHO05D004398 3.0e-23 111.3 62 85.5
FAN02G2377 Fragaria x ananassa HOM05D003862 ORTHO05D004398 3.0e-23 111.3 62 85.5
FAN09G4075 Fragaria x ananassa HOM05D003862 ORTHO05D004398 3.0e-23 111.3 62 85.5
Mapoly0020s0168 Marchantia polymorpha HOM05D003862 ORTHO05D004398 3.0e-23 111.3 62 80.6
COL.COLO4_18508 Corchorus olitorius HOM05D003862 ORTHO05D004398 5.1e-23 110.5 62 83.9
Thhalv10023780m.g Eutrema salsugineum HOM05D003862 ORTHO05D004398 5.1e-23 110.5 62 83.9
Gohir.A13G227500 Gossypium hirsutum HOM05D003862 ORTHO05D004398 5.1e-23 110.5 62 83.9
RcHm_v2.0_Chr3g0466561 Rosa chinensis HOM05D003862 ORTHO05D004398 5.1e-23 110.5 62 83.9
AL5G25420 Arabidopsis lyrata HOM05D003862 ORTHO05D004398 6.7e-23 110.2 62 83.9
Manes.01G173900 Manihot esculenta HOM05D003862 ORTHO05D004398 6.7e-23 110.2 61 83.6
Manes.02G133100 Manihot esculenta HOM05D003862 ORTHO05D004398 6.7e-23 110.2 61 83.6
THA.LOC104810779 Tarenaya hassleriana HOM05D003862 ORTHO05D004398 6.7e-23 110.2 62 83.9
THA.LOC104799442 Tarenaya hassleriana HOM05D003862 ORTHO05D004398 8.8e-23 109.8 62 83.9
Aa31LG4G15560 Aethionema arabicum HOM05D003862 ORTHO05D004398 1.5e-22 109.0 62 83.9
CARHR155240 Cardamine hirsuta HOM05D003862 ORTHO05D004398 1.5e-22 109.0 62 83.9
Duzib168G1372 Durio zibethinus HOM05D003862 ORTHO05D004398 1.5e-22 109.0 62 83.9
Duzib170G0179 Durio zibethinus HOM05D003862 ORTHO05D004398 1.5e-22 109.0 62 83.9
FvH4_6g13690 Fragaria vesca HOM05D003862 ORTHO05D004398 1.5e-22 109.0 62 83.9
Gohir.D03G125700 Gossypium hirsutum HOM05D003862 ORTHO05D004398 1.5e-22 109.0 62 83.9
Gorai.003G131900 Gossypium raimondii HOM05D003862 ORTHO05D004398 1.5e-22 109.0 62 83.9
Thecc.09G321500 Theobroma cacao HOM05D003862 ORTHO05D004398 1.5e-22 109.0 62 83.9
Ciclev10029679m.g Citrus clementina HOM05D003862 ORTHO05D004398 2.0e-22 108.6 62 83.9
BcaC02g10413 Brassica carinata HOM05D003862 ORTHO05D004398 3.3e-22 107.8 62 82.3
C04p29160 Brassica napus HOM05D003862 ORTHO05D004398 3.3e-22 107.8 62 82.3
BolC4t24450H Brassica oleracea HOM05D003862 ORTHO05D004398 3.3e-22 107.8 62 82.3
Gohir.A03G042066 Gossypium hirsutum HOM05D003862 ORTHO05D004398 3.3e-22 107.8 62 82.3
BcaC04g22454 Brassica carinata HOM05D003862 ORTHO05D004398 5.7e-22 107.1 62 80.6
A09p15900 Brassica napus HOM05D003862 ORTHO05D004398 5.7e-22 107.1 62 80.6
C09p19140 Brassica napus HOM05D003862 ORTHO05D004398 5.7e-22 107.1 62 80.6
BolC9t54821H Brassica oleracea HOM05D003862 ORTHO05D004398 5.7e-22 107.1 62 80.6
BraA09t37226Z Brassica rapa HOM05D003862 ORTHO05D004398 5.7e-22 107.1 62 80.6
Actinidia05313 Actinidia chinensis HOM05D003862 ORTHO05D004398 7.4e-22 106.7 55 90.9
BcaB07g31364 Brassica carinata HOM05D003862 ORTHO05D004398 7.4e-22 106.7 62 80.6
Aa31sc23G440 Aethionema arabicum HOM05D003862 ORTHO05D004398 1.7e-21 105.5 62 79.0
Aqoxy4G02928 Aquilegia oxysepala HOM05D003862 ORTHO05D004398 2.2e-21 105.1 61 78.7
A03p68180 Brassica napus HOM05D003862 ORTHO05D004398 2.2e-21 105.1 62 80.6
BraA01t02647Z Brassica rapa HOM05D003862 ORTHO05D004398 2.2e-21 105.1 62 80.6
Pp3c20_6200 Physcomitrium patens HOM05D003862 ORTHO05D004398 2.2e-21 105.1 62 79.0
Hund04959 Selenicereus undatus HOM05D003862 ORTHO05D004398 4.8e-21 104.0 62 77.4
SMO367G0781 Selaginella moellendorffii HOM05D003862 ORTHO05D004398 6.3e-21 103.6 62 77.4
HanXRQChr01g0009491 Helianthus annuus HOM05D003862 ORTHO05D004398 1.8e-20 102.1 71 71.8
CBR_g46834 Chara braunii HOM05D003862 ORTHO05D004398 5.3e-20 100.5 62 72.6
FAN27G3302 Fragaria x ananassa HOM05D003862 ORTHO05D004398 6.9e-20 100.1 62 74.2
ATR0559G041 Amborella trichopoda HOM05D003862 ORTHO05D004398 3.4e-19 97.8 49 89.8
Glyma.03G082300 Glycine max HOM05D003862 ORTHO05D004398 1.3e-18 95.9 61 68.9
arahy.Tifrunner.gnm1.ann1.817FQF Arachis hypogaea HOM05D003862 ORTHO05D004398 1.7e-18 95.5 59 76.3
arahy.Tifrunner.gnm1.ann1.JG2TRE Arachis hypogaea HOM05D003862 ORTHO05D004398 1.7e-18 95.5 59 76.3
Phvul.L001624 Phaseolus vulgaris HOM05D003862 ORTHO05D004398 1.7e-18 95.5 61 72.1
VMungo1127G0240 Vigna mungo HOM05D003862 ORTHO05D004398 1.7e-18 95.5 49 89.8
MD03G1093400 Malus domestica HOM05D003862 ORTHO05D004398 2.2e-18 95.1 49 89.8
arahy.Tifrunner.gnm1.ann1.GD7L84 Arachis hypogaea HOM05D003862 ORTHO05D004398 6.5e-18 93.6 59 74.6
arahy.Tifrunner.gnm1.ann1.L1N949 Arachis hypogaea HOM05D003862 ORTHO05D004398 1.4e-17 92.4 59 72.9
Lj3g0015625 Lotus japonicus HOM05D003862 ORTHO05D004398 1.9e-17 92.0 61 68.9
PGR004G0102 Punica granatum HOM05D003862 ORTHO05D004398 3.2e-17 91.3 60 71.7
MCO12G250 Micromonas commoda HOM05D003862 ORTHO05D004398 4.2e-17 90.9 55 72.7
Eucgr.A01265 Eucalyptus grandis HOM05D003862 ORTHO05D004398 2.7e-16 88.2 55 76.4
Solyc08g048070.1 Solanum lycopersicum HOM05D003862 ORTHO05D004398 8.0e-16 86.7 54 74.1
Peaxi162Scf00165g00129 Petunia axillaris HOM05D003862 ORTHO05D004398 1.0e-15 86.3 46 87.0
Psat7g239120 Pisum sativum HOM05D003862 ORTHO05D004398 1.0e-15 86.3 61 62.3
TPR.G5603 Trifolium pratense HOM05D003862 ORTHO05D004398 1.4e-15 85.9 61 60.7
FAN14G4115 Fragaria x ananassa HOM05D003862 ORTHO05D004398 3.0e-15 84.7 47 87.2
MBI14_g20103_MAGBIO Magnolia biondii HOM05D003862 ORTHO05D004398 3.9e-15 84.3 42 95.2
SalBow2G1777 Salvia bowleyana HOM05D003862 ORTHO05D004398 3.3e-14 81.3 59 64.4
unitig_6.g29269 Utricularia gibba HOM05D003862 ORTHO05D004398 3.7e-13 77.8 55 65.5
unitig_747.g21430 Utricularia gibba HOM05D003862 ORTHO05D004398 3.7e-13 77.8 55 65.5
PRCOL_00005138 Prasinoderma coloniale HOM05D003862 ORTHO05D004398 8.2e-13 76.6 55 61.8
Cre01.g033400 Chlamydomonas reinhardtii HOM05D003862 ORTHO05D004398 1.3e-10 69.3 52 59.6
Medtr4g021715 Medicago truncatula HOM05D003862 ORTHO05D004398 3.0e-07 58.2 44 56.8
Os05g0111100 Oryza sativa ssp. japonica HOM05D003862 ORTHO05D004398 3.0e-07 58.2 53 50.9


User provided reference genes

Program Settings