Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37135 Davidia involucrata HOM05D007574 ORTHO05D007552 1.9e-89 332.4 163 100.0
QL07p028963 Quercus lobata HOM05D007574 ORTHO05D007552 2.8e-27 125.9 87 74.7
QL07p029642 Quercus lobata HOM05D007574 ORTHO05D007552 2.8e-27 125.9 87 74.7
Manes.09G095800 Manihot esculenta HOM05D007574 ORTHO05D007552 1.0e-26 124.0 82 74.4
CSS0039527 Camellia sinensis var. sinensis HOM05D007574 ORTHO05D007552 4.0e-26 122.1 91 72.5
Potri.006G090100 Populus trichocarpa HOM05D007574 ORTHO05D007552 6.8e-26 121.3 86 73.3
Manes.08G080600 Manihot esculenta HOM05D007574 ORTHO05D007552 1.3e-24 117.1 86 67.4
GSVIVG01034109001 Vitis vinifera HOM05D007574 ORTHO05D007552 1.3e-24 117.1 87 70.1
CiPaw.09G197900 Carya illinoinensis HOM05D007574 ORTHO05D007552 8.3e-24 114.4 85 71.8
Thecc.05G033200 Theobroma cacao HOM05D007574 ORTHO05D007552 8.3e-24 114.4 89 66.3
TWI77G0884 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 1.1e-23 114.0 84 69.0
Ciclev10013212m.g Citrus clementina HOM05D007574 ORTHO05D007552 3.2e-23 112.5 85 72.9
Glyma.01G102300 Glycine max HOM05D007574 ORTHO05D007552 3.2e-23 112.5 84 70.2
Hma1.2p1_0766F.1_g215190 Hydrangea macrophylla HOM05D007574 ORTHO05D007552 3.2e-23 112.5 71 81.7
Eucgr.B02706 Eucalyptus grandis HOM05D007574 ORTHO05D007552 4.1e-23 112.1 93 62.4
Duzib128G0069 Durio zibethinus HOM05D007574 ORTHO05D007552 7.0e-23 111.3 87 69.0
Sabra06G0068200 Salix brachista HOM05D007574 ORTHO05D007552 9.2e-23 110.9 85 68.2
Duzib106G1300 Durio zibethinus HOM05D007574 ORTHO05D007552 1.6e-22 110.2 90 68.9
Potri.016G101900 Populus trichocarpa HOM05D007574 ORTHO05D007552 5.9e-22 108.2 85 65.9
Lj3g0003670 Lotus japonicus HOM05D007574 ORTHO05D007552 7.8e-22 107.8 87 64.4
Glyma.03G067200 Glycine max HOM05D007574 ORTHO05D007552 1.3e-21 107.1 85 65.9
MBI05_g35175_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 1.3e-21 107.1 85 65.9
TWI53G1464 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 3.9e-21 105.5 84 64.3
Phvul.010G016401 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 6.6e-21 104.8 85 64.7
TAR633G0850 Trochodendron aralioides HOM05D007574 ORTHO05D007552 3.3e-20 102.4 81 65.4
Nn2g13483 Nelumbo nucifera HOM05D007574 ORTHO05D007552 5.6e-20 101.7 84 64.3
Prupe.6G261000 Prunus persica HOM05D007574 ORTHO05D007552 5.6e-20 101.7 84 65.5
PGR031G1556 Punica granatum HOM05D007574 ORTHO05D007552 5.6e-20 101.7 91 62.6
Rhsim05G0198100 Rhododendron simsii HOM05D007574 ORTHO05D007552 9.5e-20 100.9 94 62.8
RcHm_v2.0_Chr3g0465351 Rosa chinensis HOM05D007574 ORTHO05D007552 1.6e-19 100.1 90 58.9
Gohir.D04G123600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 2.8e-19 99.4 91 63.7
Peaxi162Scf00330g00113 Petunia axillaris HOM05D007574 ORTHO05D007552 3.6e-19 99.0 89 66.3
Aqoxy2G02344 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 8.0e-19 97.8 86 61.6
FAN05G1951 Fragaria x ananassa HOM05D007574 ORTHO05D007552 8.0e-19 97.8 90 57.8
CiPaw.10G148000 Carya illinoinensis HOM05D007574 ORTHO05D007552 1.0e-18 97.4 94 67.0
Gohir.A04G084700 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.0e-18 97.4 93 61.3
FAN09G4076 Fragaria x ananassa HOM05D007574 ORTHO05D007552 1.4e-18 97.1 86 59.3
MD04G1135900 Malus domestica HOM05D007574 ORTHO05D007552 1.4e-18 97.1 84 59.5
Oeu001849.1 Olea europaea HOM05D007574 ORTHO05D007552 1.4e-18 97.1 82 64.6
Atru.chr8.2045 Acer truncatum HOM05D007574 ORTHO05D007552 4.0e-18 95.5 90 57.8
Rhsim05G0196100 Rhododendron simsii HOM05D007574 ORTHO05D007552 4.0e-18 95.5 94 57.4
PGSC0003DMG400019195 Solanum tuberosum HOM05D007574 ORTHO05D007552 4.0e-18 95.5 88 60.2
TAR623G1460 Trochodendron aralioides HOM05D007574 ORTHO05D007552 4.0e-18 95.5 86 61.6
Gorai.012G106400 Gossypium raimondii HOM05D007574 ORTHO05D007552 8.9e-18 94.4 91 59.3
Migut.L01966 Erythranthe guttata HOM05D007574 ORTHO05D007552 4.4e-17 92.0 85 58.8
Cpa.g.c39617 Carica papaya HOM05D007574 ORTHO05D007552 7.5e-17 91.3 80 60.0
Phvul.008G115600 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 9.8e-17 90.9 80 61.2
Nn2g11240 Nelumbo nucifera HOM05D007574 ORTHO05D007552 1.3e-16 90.5 84 60.7
Gohir.D01G210600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 2.9e-16 89.4 91 60.4
Gorai.002G256300 Gossypium raimondii HOM05D007574 ORTHO05D007552 2.9e-16 89.4 91 60.4
MD12G1149400 Malus domestica HOM05D007574 ORTHO05D007552 4.9e-16 88.6 85 57.6
Nitab4.5_0004744g0030 Nicotiana tabacum HOM05D007574 ORTHO05D007552 4.9e-16 88.6 72 66.7
Atru.chr8.2052 Acer truncatum HOM05D007574 ORTHO05D007552 6.4e-16 88.2 90 54.4
ClCG10G021430 Citrullus lanatus HOM05D007574 ORTHO05D007552 1.4e-15 87.0 83 66.3
Gohir.A01G221600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.4e-15 87.0 72 69.4
Glyma.18G187300 Glycine max HOM05D007574 ORTHO05D007552 4.1e-15 85.5 83 61.4
Medtr7g063490 Medicago truncatula HOM05D007574 ORTHO05D007552 9.2e-15 84.3 81 60.5
Lalb_Chr01g0022701 Lupinus albus HOM05D007574 ORTHO05D007552 1.6e-14 83.6 80 57.5
Lalb_Chr03g0042511 Lupinus albus HOM05D007574 ORTHO05D007552 2.0e-14 83.2 80 58.8
Eucgr.K03060 Eucalyptus grandis HOM05D007574 ORTHO05D007552 3.5e-14 82.4 89 50.6
Lj1g0014408 Lotus japonicus HOM05D007574 ORTHO05D007552 3.5e-14 82.4 80 55.0
MELO3C009230.2 Cucumis melo HOM05D007574 ORTHO05D007552 4.6e-14 82.0 84 60.7
DCAR_012128 Daucus carota HOM05D007574 ORTHO05D007552 4.6e-14 82.0 81 59.3
Lalb_Chr19g0125161 Lupinus albus HOM05D007574 ORTHO05D007552 1.0e-13 80.9 81 55.6
TPR.G27329 Trifolium pratense HOM05D007574 ORTHO05D007552 1.0e-13 80.9 83 56.6
ATR0665G027 Amborella trichopoda HOM05D007574 ORTHO05D007552 2.3e-13 79.7 89 52.8
Sc01g0004620 Simmondsia chinensis HOM05D007574 ORTHO05D007552 2.3e-13 79.7 86 53.5
Nitab4.5_0004598g0040 Nicotiana tabacum HOM05D007574 ORTHO05D007552 3.0e-13 79.3 80 62.5
Solyc10g086630.2 Solanum lycopersicum HOM05D007574 ORTHO05D007552 3.0e-13 79.3 83 51.8
CsaV3_3G034590 Cucumis sativus L. HOM05D007574 ORTHO05D007552 5.0e-13 78.6 81 60.5
Glyma.07G136800 Glycine max HOM05D007574 ORTHO05D007552 6.6e-13 78.2 81 59.3
Sopen10g036030 Solanum pennellii HOM05D007574 ORTHO05D007552 1.5e-12 77.0 82 51.2
PGSC0003DMG400008893 Solanum tuberosum HOM05D007574 ORTHO05D007552 1.9e-12 76.6 76 60.5
Solyc09g011190.1 Solanum lycopersicum HOM05D007574 ORTHO05D007552 3.3e-12 75.9 76 60.5
Sopen09g005930 Solanum pennellii HOM05D007574 ORTHO05D007552 5.6e-12 75.1 88 58.0
TPR.G5586 Trifolium pratense HOM05D007574 ORTHO05D007552 5.6e-12 75.1 90 53.3
Lj1g0012526 Lotus japonicus HOM05D007574 ORTHO05D007552 1.2e-11 73.9 80 50.0
Manes.02G127800 Manihot esculenta HOM05D007574 ORTHO05D007552 1.6e-11 73.6 83 49.4
Medtr4g021330 Medicago truncatula HOM05D007574 ORTHO05D007552 2.8e-11 72.8 87 52.9
Sed0004598 Sechium edule HOM05D007574 ORTHO05D007552 4.7e-11 72.0 82 56.1
Carub.0004s1969 Capsella rubella HOM05D009505 ORTHO05D007552 5.2e-10 68.6 85 50.6
HPP92_019232 Vanilla planifolia HOM05D007574 ORTHO05D007552 6.8e-10 68.2 47 66.0
SalBow5G2190 Salvia bowleyana HOM05D007574 ORTHO05D007552 1.2e-09 67.4 46 69.6
AUR62027719 Chenopodium quinoa HOM05D007574 ORTHO05D007552 2.0e-09 66.6 83 50.6
AUR62043962 Chenopodium quinoa HOM05D007574 ORTHO05D007552 4.4e-09 65.5 82 48.8
Thhalv10017906m.g Eutrema salsugineum HOM05D009505 ORTHO05D007552 4.4e-09 65.5 83 45.8
BolC4t28121H Brassica oleracea HOM05D009505 ORTHO05D007552 5.8e-09 65.1 88 45.5
Lsat_1_v5_gn_6_117001 Lactuca sativa HOM05D007574 ORTHO05D007552 5.8e-09 65.1 71 60.6
Sp4g20120 Schrenkiella parvula HOM05D009505 ORTHO05D007552 9.8e-09 64.3 89 47.2
BcaC02g07493 Brassica carinata HOM05D009505 ORTHO05D007552 1.3e-08 63.9 88 44.3
C04p66190 Brassica napus HOM05D009505 ORTHO05D007552 1.3e-08 63.9 88 44.3
BcaB02g09253 Brassica carinata HOM05D009505 ORTHO05D007552 1.7e-08 63.5 89 42.7
BcaB02g09254 Brassica carinata HOM05D009505 ORTHO05D007552 1.7e-08 63.5 89 42.7
Aa31sc218G10 Aethionema arabicum HOM05D009505 ORTHO05D007552 2.2e-08 63.2 86 46.5
C04p10180 Brassica napus HOM05D009505 ORTHO05D007552 2.2e-08 63.2 88 46.6
BraA05t19787Z Brassica rapa HOM05D009505 ORTHO05D007552 6.4e-08 61.6 86 43.0
CARHR131780 Cardamine hirsuta HOM05D009505 ORTHO05D007552 6.4e-08 61.6 86 47.7
PSO675G0145 Papaver somniferum HOM05D007574 ORTHO05D007552 6.4e-08 61.6 73 52.1
AT2G37750 Arabidopsis thaliana HOM05D009505 ORTHO05D007552 8.3e-08 61.2 89 46.1
THA.LOC109116793 Tarenaya hassleriana HOM05D009057 ORTHO05D011698 8.3e-08 61.2 72 55.6
MBI14_g13884_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 1.4e-07 60.5 65 55.4
BcaB01g03759 Brassica carinata HOM05D009505 ORTHO05D007552 2.4e-07 59.7 90 44.4
Os05g0456900 Oryza sativa ssp. japonica HOM05D007574 ORTHO05D007552 2.4e-07 59.7 47 57.4
BcaB06g29026 Brassica carinata HOM05D009505 ORTHO05D007552 7.1e-07 58.2 90 44.4
A04p28920 Brassica napus HOM05D009505 ORTHO05D007552 7.1e-07 58.2 88 42.0
BraA04t18368Z Brassica rapa HOM05D009505 ORTHO05D007552 7.1e-07 58.2 88 42.0
Thecc.09G313900 Theobroma cacao HOM05D007574 ORTHO05D007552 9.2e-07 57.8 75 48.0
AL6G11310 Arabidopsis lyrata HOM05D009057 ORTHO05D011698 1.2e-06 57.4 73 50.7
Ciclev10027461m.g Citrus clementina HOM05D007574 ORTHO05D007552 1.2e-06 57.4 82 41.5
Os01g0143900 Oryza sativa ssp. japonica HOM05D007574 ORTHO05D007552 1.2e-06 57.4 64 53.1
EL10Ac7g17001 Beta vulgaris HOM05D007574 ORTHO05D007552 1.6e-06 57.0 92 43.5
THA.LOC104824525 Tarenaya hassleriana HOM05D009505 ORTHO05D007552 2.1e-06 56.6 88 39.8
BcaNung04449 Brassica carinata HOM05D009057 ORTHO05D011698 2.7e-06 56.2 75 49.3
AT5G02090 Arabidopsis thaliana HOM05D009057 ORTHO05D011698 3.5e-06 55.8 73 49.3
BcaC01g05595 Brassica carinata HOM05D009505 ORTHO05D007552 3.5e-06 55.8 86 43.0
BcaC01g05596 Brassica carinata HOM05D009505 ORTHO05D007552 3.5e-06 55.8 86 43.0
C03p24490 Brassica napus HOM05D009505 ORTHO05D007552 3.5e-06 55.8 86 43.0
BolC3t14847H Brassica oleracea HOM05D009505 ORTHO05D007552 3.5e-06 55.8 86 43.0
CARHR211270 Cardamine hirsuta HOM05D009057 ORTHO05D011698 3.5e-06 55.8 76 47.4
COL.COLO4_18585 Corchorus olitorius HOM05D007574 ORTHO05D007552 4.6e-06 55.5 81 43.2
AL4G34680 Arabidopsis lyrata HOM05D009505 ORTHO05D007552 7.8e-06 54.7 86 40.7


User provided reference genes

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