Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37103 Davidia involucrata HOM05D005668 ORTHO05D007082 8.6e-145 516.9 253 100.0
Hma1.2p1_0671F.1_g200690 Hydrangea macrophylla HOM05D005668 ORTHO05D007082 8.7e-97 357.5 279 67.0
CSS0033766 Camellia sinensis var. sinensis HOM05D005668 ORTHO05D007082 1.4e-91 340.1 280 65.0
Actinidia13809 Actinidia chinensis HOM05D005668 ORTHO05D007082 3.3e-88 328.9 279 63.4
GSVIVG01034046001 Vitis vinifera HOM05D005668 ORTHO05D007082 7.4e-88 327.8 279 62.4
Actinidia29156 Actinidia chinensis HOM05D005668 ORTHO05D007082 1.3e-79 300.4 279 59.5
QL07p027771 Quercus lobata HOM05D005668 ORTHO05D007082 1.5e-77 293.5 259 57.5
CiPaw.09G203400 Carya illinoinensis HOM05D005668 ORTHO05D007082 2.0e-77 293.1 260 57.3
Cc06_g01940 Coffea canephora HOM05D005668 ORTHO05D007082 1.6e-74 283.5 283 54.8
Rhsim05G0201000 Rhododendron simsii HOM05D005668 ORTHO05D007082 7.9e-74 281.2 283 54.8
Haze_20910 Corylus avellana HOM05D005668 ORTHO05D007082 6.7e-73 278.1 256 57.4
CiPaw.10G150900 Carya illinoinensis HOM05D005668 ORTHO05D007082 1.1e-72 277.3 260 55.4
Nn2g13550 Nelumbo nucifera HOM05D005668 ORTHO05D007082 3.3e-72 275.8 248 58.9
MSTRG.5615 Avicennia marina HOM05D005668 ORTHO05D007082 7.4e-72 274.6 286 55.6
Nitab4.5_0000119g0350 Nicotiana tabacum HOM05D005668 ORTHO05D007082 4.8e-71 271.9 276 55.4
Solyc09g011730.4 Solanum lycopersicum HOM05D005668 ORTHO05D007082 8.2e-71 271.2 280 53.2
Sopen09g006550 Solanum pennellii HOM05D005668 ORTHO05D007082 8.2e-71 271.2 280 53.2
Lj3P959T33 Lonicera japonica HOM05D005668 ORTHO05D007082 5.3e-70 268.5 189 71.4
PGSC0003DMG400019135 Solanum tuberosum HOM05D005668 ORTHO05D007082 1.2e-69 267.3 281 54.8
CAN.G351.19 Capsicum annuum HOM05D005668 ORTHO05D007082 2.0e-69 266.5 234 60.7
PGSC0003DMG400020340 Solanum tuberosum HOM05D005668 ORTHO05D007082 1.0e-68 264.2 279 52.7
HanXRQChr10g0292601 Helianthus annuus HOM05D005668 ORTHO05D007082 3.8e-68 262.3 261 53.6
Peaxi162Scf00014g01419 Petunia axillaris HOM05D005668 ORTHO05D007082 5.0e-68 261.9 274 51.5
ECA247G1252 Erigeron canadensis HOM05D005668 ORTHO05D007082 6.5e-68 261.5 270 54.4
Migut.J00254 Erythranthe guttata HOM05D005668 ORTHO05D007082 4.2e-67 258.8 188 72.3
Prupe.6G267200 Prunus persica HOM05D005668 ORTHO05D007082 7.2e-67 258.1 235 59.1
Cpa.g.sc56.75 Carica papaya HOM05D005668 ORTHO05D007082 2.1e-66 256.5 261 53.3
TWI77G0370 Tripterygium wilfordii HOM05D005668 ORTHO05D007082 3.6e-66 255.8 261 53.3
Ciclev10012485m.g Citrus clementina HOM05D005668 ORTHO05D007082 2.3e-65 253.1 264 52.3
Lalb_Chr07g0193171 Lupinus albus HOM05D005668 ORTHO05D007082 5.7e-64 248.4 260 51.5
Manes.09G099500 Manihot esculenta HOM05D005668 ORTHO05D007082 9.7e-64 247.7 247 56.3
CAN.G978.9 Capsicum annuum HOM05D005668 ORTHO05D007082 2.8e-63 246.1 281 49.8
PSO384G2457 Papaver somniferum HOM05D005668 ORTHO05D007082 4.8e-63 245.4 292 49.7
TAR633G1417 Trochodendron aralioides HOM05D005668 ORTHO05D007082 8.2e-63 244.6 189 66.1
CANSAT35G1374 Cannabis sativa HOM05D005668 ORTHO05D007082 1.4e-62 243.8 261 52.5
Potri.016G105600 Populus trichocarpa HOM05D005668 ORTHO05D007082 3.1e-62 242.7 256 54.3
Lsat_1_v5_gn_9_29260 Lactuca sativa HOM05D005668 ORTHO05D007082 4.1e-62 242.3 279 49.5
Thecc.05G026500 Theobroma cacao HOM05D005668 ORTHO05D007082 4.1e-62 242.3 250 54.4
arahy.Tifrunner.gnm1.ann1.J12K19 Arachis hypogaea HOM05D005668 ORTHO05D007082 1.6e-61 240.4 259 51.7
PSO339G5656 Papaver somniferum HOM05D005668 ORTHO05D007082 2.7e-61 239.6 198 63.1
Potri.006G093700 Populus trichocarpa HOM05D005668 ORTHO05D007082 2.7e-61 239.6 250 52.8
MD04G1141800 Malus domestica HOM05D005668 ORTHO05D007082 4.5e-61 238.8 261 51.7
Glyma.01G107100 Glycine max HOM05D005668 ORTHO05D007082 5.9e-61 238.4 258 51.2
arahy.Tifrunner.gnm1.ann1.WQ4JXZ Arachis hypogaea HOM05D005668 ORTHO05D007082 7.7e-61 238.0 259 51.4
RcHm_v2.0_Chr3g0464311 Rosa chinensis HOM05D005668 ORTHO05D007082 1.0e-60 237.7 260 51.9
HanXRQChr06g0176661 Helianthus annuus HOM05D005668 ORTHO05D007082 5.0e-60 235.3 279 48.4
Atru.chr8.2154 Acer truncatum HOM05D005668 ORTHO05D007082 8.5e-60 234.6 254 52.8
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 8.5e-60 234.6 200 60.0
Glyma.03G073762 Glycine max HOM05D005668 ORTHO05D007082 1.1e-59 234.2 258 51.2
MD12G1156400 Malus domestica HOM05D005668 ORTHO05D007082 1.1e-59 234.2 261 50.2
Dinv35535 Davidia involucrata HOM05D005668 ORTHO05D007082 1.9e-59 233.4 191 68.6
COL.COLO4_14664 Corchorus olitorius HOM05D005668 ORTHO05D007082 2.5e-59 233.0 245 52.7
Ca_07382_v3 Cicer arietinum L. HOM05D005668 ORTHO05D007082 5.5e-59 231.9 258 48.1
unitig_27.g24805 Utricularia gibba HOM05D005668 ORTHO05D007082 5.5e-59 231.9 282 47.2
FAN09G2081 Fragaria x ananassa HOM05D005668 ORTHO05D007082 7.2e-59 231.5 260 50.0
Aqoxy5G03828 Aquilegia oxysepala HOM05D005668 ORTHO05D007082 2.1e-58 229.9 245 54.7
VMungo0540G0241 Vigna mungo HOM05D005668 ORTHO05D007082 2.1e-58 229.9 249 49.8
EL10Ac7g17156 Beta vulgaris HOM05D005668 ORTHO05D007082 2.7e-58 229.6 273 49.1
FvH4_6g12490 Fragaria vesca HOM05D005668 ORTHO05D007082 2.7e-58 229.6 260 50.8
FAN02G1041 Fragaria x ananassa HOM05D005668 ORTHO05D007082 2.7e-58 229.6 260 50.4
Phvul.006G070400 Phaseolus vulgaris HOM05D005668 ORTHO05D007082 2.7e-58 229.6 259 50.6
Medtr4g019910 Medicago truncatula HOM05D005668 ORTHO05D007082 6.1e-58 228.4 258 49.6
Duzib093G0236 Durio zibethinus HOM05D005668 ORTHO05D007082 8.0e-58 228.0 250 50.8
FAN14G5852 Fragaria x ananassa HOM05D005668 ORTHO05D007082 1.0e-57 227.6 258 50.4
MBI14_g25115_MAGBIO Magnolia biondii HOM05D005668 ORTHO05D007082 1.4e-57 227.3 184 60.3
Hund26016 Selenicereus undatus HOM05D005668 ORTHO05D007082 2.3e-57 226.5 194 59.8
AUR62034588 Chenopodium quinoa HOM05D005668 ORTHO05D007082 2.6e-56 223.0 182 61.5
AUR62036679 Chenopodium quinoa HOM05D005668 ORTHO05D007082 3.4e-56 222.6 182 61.5
Sabra06G0071200 Salix brachista HOM05D005668 ORTHO05D007082 4.4e-56 222.2 182 62.6
PGR044G0692 Punica granatum HOM05D005668 ORTHO05D007082 9.8e-56 221.1 244 50.4
Eucgr.F01481 Eucalyptus grandis HOM05D005668 ORTHO05D007082 8.3e-55 218.0 186 59.1
FAN05G5175 Fragaria x ananassa HOM05D005668 ORTHO05D007082 8.3e-55 218.0 235 51.5
Lj3g0016116 Lotus japonicus HOM05D005668 ORTHO05D007082 1.1e-54 217.6 258 46.5
DCAR_024047 Daucus carota HOM05D005668 ORTHO05D007082 1.8e-54 216.9 160 68.1
ClCG10G021640 Citrullus lanatus HOM05D005668 ORTHO05D007082 2.4e-54 216.5 241 51.5
SGA_v2.0_scaffold75G24983 Striga asiatica HOM05D005668 ORTHO05D007082 3.1e-54 216.1 176 61.9
MELO3C009208.2 Cucumis melo HOM05D005668 ORTHO05D007082 7.0e-54 214.9 237 50.6
Sc01g0004980 Simmondsia chinensis HOM05D005668 ORTHO05D007082 2.7e-53 213.0 195 60.0
Gohir.A09G162000 Gossypium hirsutum HOM05D005668 ORTHO05D007082 3.5e-53 212.6 179 60.3
Gorai.006G179300 Gossypium raimondii HOM05D005668 ORTHO05D007082 3.5e-53 212.6 250 48.8
AL3G20360 Arabidopsis lyrata HOM05D005668 ORTHO05D007082 4.5e-53 212.2 191 57.1
Gohir.D09G157600 Gossypium hirsutum HOM05D005668 ORTHO05D007082 7.7e-53 211.5 179 60.3
Manes.07G057000 Manihot esculenta HOM05D005668 ORTHO05D007082 7.7e-53 211.5 183 58.5
CDE04G3656 Ceratophyllum demersum HOM05D005668 ORTHO05D007082 1.0e-52 211.1 178 57.9
Carub.0003s0836 Capsella rubella HOM05D005668 ORTHO05D007082 1.3e-52 210.7 186 58.1
AT3G09250 Arabidopsis thaliana HOM05D005668 ORTHO05D007082 1.7e-52 210.3 191 56.0
Sed0009323 Sechium edule HOM05D005668 ORTHO05D007082 1.7e-52 210.3 182 58.2
CARHR083600 Cardamine hirsuta HOM05D005668 ORTHO05D007082 2.3e-52 209.9 186 58.6
Os02g0788500 Oryza sativa ssp. japonica HOM05D005668 ORTHO05D007082 2.9e-52 209.5 202 54.5
CsaV3_3G034370 Cucumis sativus L. HOM05D005668 ORTHO05D007082 6.5e-52 208.4 237 48.9
THA.LOC104823270 Tarenaya hassleriana HOM05D005668 ORTHO05D007082 6.5e-52 208.4 183 56.8
BcaC09g48013 Brassica carinata HOM05D005668 ORTHO05D007082 1.9e-51 206.8 183 57.9
Thhalv10021409m.g Eutrema salsugineum HOM05D005668 ORTHO05D007082 4.2e-51 205.7 186 56.5
Sp3g07630 Schrenkiella parvula HOM05D005668 ORTHO05D007082 4.2e-51 205.7 181 58.6
BolC1t05468H Brassica oleracea HOM05D005668 ORTHO05D007082 1.4e-49 200.7 181 55.8
BraA01t04309Z Brassica rapa HOM05D005668 ORTHO05D007082 6.8e-49 198.4 181 55.2
Aa31LG3G1740 Aethionema arabicum HOM05D005668 ORTHO05D007082 8.9e-49 198.0 181 56.4
BcaC09g48059 Brassica carinata HOM05D005668 ORTHO05D007082 8.9e-49 198.0 181 55.2
Gohir.A10G232501 Gossypium hirsutum HOM05D005668 ORTHO05D007082 2.2e-47 193.4 175 57.7
Gohir.D10G244900 Gossypium hirsutum HOM05D005668 ORTHO05D007082 2.8e-47 193.0 175 57.7
Os01g0753200 Oryza sativa ssp. japonica HOM05D005668 ORTHO05D007082 2.8e-47 193.0 174 52.3
SHI12750 Sapria himalayana HOM05D005668 ORTHO05D007082 2.8e-47 193.0 180 52.8
ATR0950G003 Amborella trichopoda HOM05D005668 ORTHO05D007082 6.3e-47 191.8 249 43.8
Phvul.006G070500 Phaseolus vulgaris HOM05D005668 ORTHO05D007082 9.2e-46 188.0 257 44.0
Psat7g240360 Pisum sativum HOM05D005668 ORTHO05D007082 1.3e-44 184.1 267 44.2
Nitab4.5_0000008g0300 Nicotiana tabacum HOM05D005668 ORTHO05D007082 1.7e-44 183.7 140 60.0
HPP92_006850 Vanilla planifolia HOM05D005668 ORTHO05D007082 6.1e-42 175.3 166 51.2
HPP92_006867 Vanilla planifolia HOM05D005668 ORTHO05D007082 1.4e-41 174.1 166 50.6
SEGI_35617 Sequoiadendron giganteum HOM05D005668 ORTHO05D007082 3.0e-41 172.9 170 45.9
Zm00001eb257420 Zea mays HOM05D005668 ORTHO05D007082 5.2e-41 172.2 179 50.3
MBI14_g45810_MAGBIO Magnolia biondii HOM05D005668 ORTHO05D007082 6.4e-39 165.2 151 56.3
Gorai.011G282300 Gossypium raimondii HOM05D005668 ORTHO05D007082 7.0e-38 161.8 158 55.1
BcaC01g04218 Brassica carinata HOM05D005668 ORTHO05D007082 6.6e-36 155.2 172 51.2
Gohir.A10G229920 Gossypium hirsutum HOM05D005668 ORTHO05D007082 2.5e-35 153.3 158 52.5
SMO143G0113 Selaginella moellendorffii HOM05D005668 ORTHO05D007082 1.8e-33 147.1 155 50.3
Oeu039148.1 Olea europaea HOM05D005668 ORTHO05D007082 6.4e-31 138.7 102 63.7
AagrBONN_evm.TU.Sc2ySwM_228.2951 Anthoceros agrestis HOM05D005668 ORTHO05D007082 2.0e-29 133.7 149 42.3
vmacro20204 Vaccinium macrocarpon HOM05D005668 ORTHO05D007082 4.6e-29 132.5 102 61.8
TPR.G2978 Trifolium pratense HOM05D005668 ORTHO05D007082 6.6e-28 128.6 163 48.5
Nitab4.5_0010516g0020 Nicotiana tabacum HOM05D005668 ORTHO05D007082 2.6e-24 116.7 59 81.4
Psat3g035960 Pisum sativum HOM05D005668 ORTHO05D007082 5.8e-24 115.5 100 60.0
arahy.Tifrunner.gnm1.ann1.2N10NB Arachis hypogaea HOM05D005668 ORTHO05D007082 8.3e-23 111.7 168 44.6
BcaB04g18542 Brassica carinata HOM05D005668 ORTHO05D007082 1.6e-21 107.5 103 51.5
C03p43750 Brassica napus HOM05D005668 ORTHO05D007082 1.0e-20 104.8 103 51.5
Atru.chr10.1066 Acer truncatum HOM05D005668 ORTHO05D007082 6.2e-18 95.5 165 41.8
BraA03t12781Z Brassica rapa HOM05D005668 ORTHO05D007082 1.7e-15 87.4 80 55.0
A03p36100 Brassica napus HOM05D005668 ORTHO05D007082 4.9e-15 85.9 76 56.6
Nitab4.5_0002152g0020 Nicotiana tabacum HOM05D005668 ORTHO05D007082 1.7e-12 77.4 75 54.7
Cre08.g375950 Chlamydomonas reinhardtii HOM05D005668 ORTHO05D007082 9.6e-11 71.6 126 32.5
BraA03t12780Z Brassica rapa HOM05D005668 ORTHO05D007082 2.4e-09 67.0 41 75.6
Mapoly0024s0042 Marchantia polymorpha HOM05D005144 ORTHO05D006112 3.1e-09 66.6 116 34.5
SMO356G0181 Selaginella moellendorffii HOM05D005144 ORTHO05D006112 1.3e-07 61.2 116 31.0
TPR.G339 Trifolium pratense HOM05D005668 ORTHO05D007082 4.9e-07 59.3 113 34.5
Nitab4.5_0010516g0030 Nicotiana tabacum HOM05D005668 ORTHO05D007082 3.2e-06 56.6 140 35.7
Ah.12g052690 Amaranthus hybridus HOM05D005144 ORTHO05D006112 7.1e-06 55.5 117 28.2


User provided reference genes

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