Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 1.3e-275 952.6 516 100.0
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 1.3e-184 650.2 517 76.4
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 3.2e-178 629.0 516 70.5
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 1.7e-168 596.7 522 65.7
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 2.6e-156 556.2 521 63.3
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.6e-153 547.0 427 73.5
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 5.1e-152 542.0 506 63.6
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 1.2e-145 520.8 502 63.9
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 2.1e-145 520.0 523 61.4
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 2.8e-142 509.6 501 61.5
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 2.4e-141 506.5 521 59.5
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 9.0e-141 504.6 521 59.3
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 6.5e-139 498.4 520 58.8
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 1.6e-137 493.8 514 59.1
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 1.8e-136 490.3 521 59.1
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 4.3e-135 485.7 518 59.5
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 9.0e-133 478.0 508 59.6
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 5.9e-132 475.3 513 62.0
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 4.2e-130 469.2 513 58.3
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 1.8e-128 463.8 512 58.2
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 6.7e-128 461.8 515 57.1
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 2.0e-127 460.3 510 56.3
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 5.7e-127 458.8 509 58.9
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 9.1e-125 451.4 517 57.6
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 1.5e-124 450.7 512 53.9
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 3.4e-124 449.5 512 58.0
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 1.3e-123 447.6 519 53.4
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 5.0e-123 445.7 520 55.6
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 5.0e-123 445.7 482 57.9
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 5.0e-123 445.7 529 55.8
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 1.2e-121 441.0 529 55.8
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 2.1e-121 440.3 513 53.8
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 3.6e-121 439.5 523 56.8
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 1.0e-120 438.0 526 55.7
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 1.5e-119 434.1 511 55.6
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.5e-119 434.1 513 53.6
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.6e-119 433.3 508 53.3
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 6.3e-118 428.7 508 51.8
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 5.3e-117 425.6 515 51.7
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 7.0e-117 425.2 508 52.0
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 5.0e-115 419.1 507 53.6
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 1.4e-114 417.5 513 51.5
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 2.7e-113 413.3 516 51.7
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 8.8e-112 408.3 509 52.1
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 2.0e-111 407.1 510 51.2
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 7.4e-111 405.2 507 50.5
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 1.7e-110 404.1 502 49.6
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 2.4e-109 400.2 522 49.0
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 3.1e-109 399.8 508 51.8
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 1.2e-108 397.9 456 56.1
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 5.9e-108 395.6 530 52.8
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 1.3e-107 394.4 529 51.6
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 1.7e-107 394.0 540 49.3
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 3.0e-104 383.3 510 52.5
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 3.0e-104 383.3 507 52.5
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 5.2e-104 382.5 538 50.2
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 9.7e-103 378.3 508 53.3
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.2e-102 377.1 539 46.9
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 6.3e-102 375.6 536 48.3
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 7.0e-101 372.1 530 47.9
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 1.6e-100 370.9 390 55.9
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 4.5e-100 369.4 516 47.3
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 1.1e-98 364.8 510 46.3
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 7.2e-98 362.1 525 45.7
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 2.1e-97 360.5 498 46.8
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 1.8e-96 357.5 516 47.7
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 1.8e-96 357.5 512 45.9
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 6.8e-96 355.5 507 46.2
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.2e-95 354.8 516 47.3
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 2.0e-95 354.0 514 47.9
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 3.4e-95 353.2 513 46.8
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 1.3e-94 351.3 512 46.3
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 4.8e-94 349.4 520 47.9
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 6.3e-94 349.0 474 51.9
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 4.1e-93 346.3 509 47.3
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 1.6e-92 344.4 517 45.5
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 2.0e-92 344.0 508 45.7
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 4.5e-92 342.8 536 45.3
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 4.5e-92 342.8 449 54.3
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 1.1e-90 338.2 530 46.0
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 2.5e-90 337.0 529 46.5
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 3.6e-89 333.2 508 47.0
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 6.1e-89 332.4 447 51.5
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 8.9e-88 328.6 522 44.1
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 2.0e-87 327.4 446 49.1
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.6e-87 327.0 525 45.9
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 1.3e-86 324.7 428 51.2
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 2.2e-86 323.9 519 46.6
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.7e-83 314.3 410 48.3
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 3.9e-83 313.2 438 46.3
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 9.5e-82 308.5 508 43.5
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 6.1e-81 305.8 415 49.9
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 1.0e-80 305.1 513 43.7
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 4.0e-80 303.1 517 44.1
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 2.6e-79 300.4 517 42.9
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 1.3e-78 298.1 506 42.9
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 8.3e-78 295.4 478 47.5
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 3.2e-77 293.5 438 47.7
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 4.1e-77 293.1 515 42.9
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 4.3e-74 283.1 510 42.0
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 1.4e-72 278.1 371 49.6
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 3.1e-72 276.9 454 45.8
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 1.3e-70 271.6 524 40.6
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 1.1e-69 268.5 280 57.1
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.9e-69 267.7 354 49.4
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 1.2e-68 265.0 456 40.1
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 3.5e-68 263.5 529 40.5
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 3.5e-68 263.5 533 41.3
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 4.6e-68 263.1 482 39.8
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 7.8e-68 262.3 524 42.4
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 1.7e-67 261.2 521 38.6
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 3.0e-67 260.4 463 40.2
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.9e-66 257.7 474 43.9
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 8.1e-65 252.3 516 41.9
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.7e-60 237.3 434 39.6
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 3.5e-60 236.9 435 39.8
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 1.7e-59 234.6 526 38.2
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 5.1e-59 233.0 438 39.3
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 6.6e-59 232.6 439 39.0
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 1.5e-58 231.5 465 42.6
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 5.6e-58 229.6 448 38.6
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 1.2e-57 228.4 434 38.2
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 8.1e-57 225.7 143 83.9
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 8.1e-57 225.7 513 37.4
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 3.1e-56 223.8 439 40.5
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 2.0e-55 221.1 499 35.9
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 9.9e-55 218.8 513 34.5
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 2.2e-54 217.6 369 45.0
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 5.3e-48 196.4 446 37.9
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 1.5e-47 194.9 432 38.4
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 9.9e-47 192.2 453 35.1
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 1.3e-46 191.8 456 34.4
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 1.9e-45 188.0 435 37.2
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 1.9e-45 188.0 413 33.9
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 2.4e-45 187.6 481 36.8
Rhsim07G0146000 Rhododendron simsii HOM05D003987 ORTHO05D004532 7.1e-45 186.0 293 48.1
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 2.1e-44 184.5 413 33.9
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 4.6e-44 183.3 413 33.7
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 5.6e-42 176.4 429 36.4
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 4.0e-40 170.2 207 51.7
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 5.8e-39 166.4 453 32.5
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 1.7e-38 164.9 391 33.8
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 1.6e-36 158.3 146 62.3
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 6.7e-35 152.9 452 33.4
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 1.9e-34 151.4 362 32.6
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 5.6e-34 149.8 181 47.5
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 9.6e-34 149.1 525 30.9
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 1.3e-33 148.7 290 40.0
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 8.1e-33 146.0 474 30.6
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 4.9e-30 136.7 138 54.3
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.1e-29 135.6 119 56.3
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 1.3e-27 128.6 307 35.5
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 6.7e-27 126.3 82 75.6
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 1.9e-26 124.8 518 27.6
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 3.4e-23 114.0 538 28.1
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 6.5e-14 83.2 215 29.3
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 3.2e-13 80.9 58 65.5
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 6.1e-12 76.6 167 32.3
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.4e-11 75.5 131 32.8
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 2.3e-11 74.7 296 27.7
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 3.9e-11 73.9 210 30.5
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 3.3e-10 70.9 243 28.8
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 7.4e-10 69.7 108 36.1
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 9.7e-10 69.3 72 45.8
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.3e-09 68.9 429 25.4
SHI32880 Sapria himalayana HOM05D003987 ORTHO05D004532 1.3e-09 68.9 223 31.8
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 1.7e-09 68.6 243 27.6
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 3.7e-09 67.4 234 25.6
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 3.7e-09 67.4 379 26.6
unitig_26.g9098 Utricularia gibba HOM05D003987 ORTHO05D004532 6.3e-09 66.6 139 35.3
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 2.4e-08 64.7 389 25.7
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 3.1e-08 64.3 68 47.1
VMungo0331G1594 Vigna mungo HOM05D003987 ORTHO05D004532 9.1e-08 62.8 100 44.0
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 1.5e-07 62.0 43 62.8
FAN08G1429 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.6e-07 61.2 128 36.7
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 1.7e-06 58.5 220 27.7


User provided reference genes

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