Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37082 Davidia involucrata HOM05D005866 ORTHO05D007078 1.5e-65 252.7 128 100.0
Dinv14530 Davidia involucrata HOM05D005866 ORTHO05D007078 9.7e-28 127.1 98 68.4
Dinv35509 Davidia involucrata HOM05D005866 ORTHO05D007078 3.7e-27 125.2 98 67.3
CiPaw.09G206400 Carya illinoinensis HOM05D005866 ORTHO05D007078 1.4e-26 123.2 97 61.9
TAR633G2503 Trochodendron aralioides HOM05D005866 ORTHO05D007078 1.0e-24 117.1 96 63.5
Sabra06G0074300 Salix brachista HOM05D005866 ORTHO05D007078 2.5e-23 112.5 110 52.7
Cpa.g.sc56.117 Carica papaya HOM05D005866 ORTHO05D007078 3.6e-22 108.6 97 58.8
Nn2g11373 Nelumbo nucifera HOM05D005866 ORTHO05D007078 1.0e-21 107.1 103 55.3
Nitab4.5_0004912g0060 Nicotiana tabacum HOM05D005866 ORTHO05D007078 1.8e-21 106.3 95 57.9
CSS0007949 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 3.0e-21 105.5 98 58.2
CSS0025068 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 3.0e-21 105.5 98 58.2
CAN.G1297.4 Capsicum annuum HOM05D005866 ORTHO05D007078 3.0e-21 105.5 99 58.6
ClCG04G007220 Citrullus lanatus HOM05D005866 ORTHO05D007078 4.0e-21 105.1 97 57.7
Potri.006G096700 Populus trichocarpa HOM05D005866 ORTHO05D007078 5.2e-21 104.8 110 49.1
Atru.chr8.2203 Acer truncatum HOM05D005866 ORTHO05D007078 6.7e-21 104.4 97 54.6
Nitab4.5_0000652g0170 Nicotiana tabacum HOM05D005866 ORTHO05D007078 1.5e-20 103.2 96 55.2
Prupe.6G271100 Prunus persica HOM05D000012 ORTHO05D000567 2.6e-20 102.4 110 50.9
TAR623G0986 Trochodendron aralioides HOM05D005866 ORTHO05D007078 2.6e-20 102.4 78 65.4
ECA247G0127 Erigeron canadensis HOM05D005866 ORTHO05D007078 3.3e-20 102.1 105 53.3
Sopen10g034540 Solanum pennellii HOM05D005866 ORTHO05D007078 7.4e-20 100.9 99 54.5
PGSC0003DMG400011090 Solanum tuberosum HOM05D005866 ORTHO05D007078 7.4e-20 100.9 99 54.5
Carub.0003s0821 Capsella rubella HOM05D005866 ORTHO05D007078 9.7e-20 100.5 97 50.5
GSVIVG01034004001 Vitis vinifera HOM05D000012 ORTHO05D000567 1.7e-19 99.8 91 54.9
ECA247G1841 Erigeron canadensis HOM05D005866 ORTHO05D007078 2.2e-19 99.4 95 54.7
AUR62042946 Chenopodium quinoa HOM05D005866 ORTHO05D007078 2.8e-19 99.0 110 47.3
Peaxi162Scf00141g00718 Petunia axillaris HOM05D005866 ORTHO05D007078 2.8e-19 99.0 92 55.4
MELO3C003227.2 Cucumis melo HOM05D005866 ORTHO05D007078 3.7e-19 98.6 97 54.6
FAN14G3518 Fragaria x ananassa HOM05D005866 ORTHO05D007078 3.7e-19 98.6 111 50.5
Lj3g0009346 Lotus japonicus HOM05D005866 ORTHO05D007078 4.8e-19 98.2 98 50.0
CsaV3_4G026010 Cucumis sativus L. HOM05D005866 ORTHO05D007078 8.2e-19 97.4 97 53.6
A05p39790 Brassica napus HOM05D005866 ORTHO05D007078 1.8e-18 96.3 97 50.5
BraA05t22763Z Brassica rapa HOM05D005866 ORTHO05D007078 1.8e-18 96.3 97 50.5
DCAR_015452 Daucus carota HOM05D005866 ORTHO05D007078 2.4e-18 95.9 96 55.2
AT3G09050 Arabidopsis thaliana HOM05D005866 ORTHO05D007078 3.1e-18 95.5 97 49.5
BcaC09g48050 Brassica carinata HOM05D005866 ORTHO05D007078 3.1e-18 95.5 97 51.5
SGA_v2.0_scaffold85G26760 Striga asiatica HOM05D005866 ORTHO05D007078 3.1e-18 95.5 96 51.0
BraA01t04319Z Brassica rapa HOM05D005866 ORTHO05D007078 5.3e-18 94.7 97 51.5
Duzib128G1899 Durio zibethinus HOM05D005866 ORTHO05D007078 5.3e-18 94.7 90 55.6
FAN09G2814 Fragaria x ananassa HOM05D000012 ORTHO05D007078 7.0e-18 94.4 110 48.2
MD04G1147400 Malus domestica HOM05D005866 ORTHO05D007078 7.0e-18 94.4 110 47.3
Sopen09g007090 Solanum pennellii HOM05D005866 ORTHO05D007078 7.0e-18 94.4 88 54.5
vmacro08602 Vaccinium macrocarpon HOM05D005866 ORTHO05D007078 7.0e-18 94.4 99 51.5
AL3G20110 Arabidopsis lyrata HOM05D005866 ORTHO05D007078 9.1e-18 94.0 97 48.5
C05p58830 Brassica napus HOM05D005866 ORTHO05D007078 9.1e-18 94.0 97 49.5
Thhalv10021354m.g Eutrema salsugineum HOM05D005866 ORTHO05D007078 9.1e-18 94.0 97 49.5
RcHm_v2.0_Chr3g0463811 Rosa chinensis HOM05D005866 ORTHO05D007078 1.2e-17 93.6 108 48.1
Manes.09G102400 Manihot esculenta HOM05D005866 ORTHO05D007078 1.6e-17 93.2 102 47.1
Thecc.05G021700 Theobroma cacao HOM05D005866 ORTHO05D007078 1.6e-17 93.2 90 52.2
Sp3g07500 Schrenkiella parvula HOM05D005866 ORTHO05D007078 2.0e-17 92.8 97 49.5
AUR62025814 Chenopodium quinoa HOM05D005866 ORTHO05D007078 2.6e-17 92.4 111 47.7
BcaC09g48005 Brassica carinata HOM05D005866 ORTHO05D007078 3.5e-17 92.0 98 50.0
FvH4_6g11980 Fragaria vesca HOM05D005866 ORTHO05D007078 3.5e-17 92.0 106 49.1
FAN14G3397 Fragaria x ananassa HOM05D000012 ORTHO05D000567 3.5e-17 92.0 106 49.1
Gohir.D01G215200 Gossypium hirsutum HOM05D005866 ORTHO05D007078 4.5e-17 91.7 97 49.5
BcaC05g29639 Brassica carinata HOM05D005866 ORTHO05D007078 5.9e-17 91.3 97 48.5
BolC1t05477H Brassica oleracea HOM05D005866 ORTHO05D007078 5.9e-17 91.3 97 49.5
CARHR083410 Cardamine hirsuta HOM05D005866 ORTHO05D007078 5.9e-17 91.3 97 47.4
unitig_578.g15896 Utricularia gibba HOM05D005866 ORTHO05D007078 5.9e-17 91.3 100 48.0
BolC5t34535H Brassica oleracea HOM05D005866 ORTHO05D007078 1.0e-16 90.5 97 47.4
FAN02G1355 Fragaria x ananassa HOM05D005866 ORTHO05D007078 1.7e-16 89.7 106 48.1
Solyc10g085080.3 Solanum lycopersicum HOM05D005866 ORTHO05D007078 1.7e-16 89.7 115 47.0
TWI74G1551 Tripterygium wilfordii HOM05D005866 ORTHO05D007078 1.7e-16 89.7 96 51.0
Aa31LG3G1580 Aethionema arabicum HOM05D005866 ORTHO05D007078 2.2e-16 89.4 97 47.4
Sed0005881 Sechium edule HOM05D005866 ORTHO05D007078 2.2e-16 89.4 97 49.5
VMungo0331G1214 Vigna mungo HOM05D005866 ORTHO05D007078 2.2e-16 89.4 98 49.0
CDE03G0505 Ceratophyllum demersum HOM05D005866 ORTHO05D007078 2.9e-16 89.0 97 47.4
FAN05G0379 Fragaria x ananassa HOM05D000012 ORTHO05D000567 2.9e-16 89.0 103 49.5
Hund02698 Selenicereus undatus HOM05D005866 ORTHO05D007078 3.8e-16 88.6 109 42.2
Ciclev10012537m.g Citrus clementina HOM05D005866 ORTHO05D007078 5.0e-16 88.2 78 55.1
Gohir.A01G225500 Gossypium hirsutum HOM05D005866 ORTHO05D007078 5.0e-16 88.2 89 49.4
Lj2P1203T18 Lonicera japonica HOM05D005866 ORTHO05D007078 5.0e-16 88.2 99 48.5
Nitab4.5_0001837g0050 Nicotiana tabacum HOM05D005866 ORTHO05D007078 5.0e-16 88.2 72 61.1
Lsat_1_v5_gn_9_36061 Lactuca sativa HOM05D005866 ORTHO05D007078 8.5e-16 87.4 98 45.9
Sc01g0006840 Simmondsia chinensis HOM05D005866 ORTHO05D007078 1.1e-15 87.0 104 42.3
COL.COLO4_14593 Corchorus olitorius HOM05D005866 ORTHO05D007078 1.9e-15 86.3 94 53.2
Lj2C80T14 Lonicera japonica HOM05D005866 ORTHO05D007078 1.9e-15 86.3 102 46.1
Nitab4.5_0000008g0810 Nicotiana tabacum HOM05D005866 ORTHO05D007078 1.9e-15 86.3 72 58.3
PGR031G2542 Punica granatum HOM05D005866 ORTHO05D007078 1.9e-15 86.3 93 51.6
Ah.12g060060 Amaranthus hybridus HOM05D005866 ORTHO05D007078 3.2e-15 85.5 102 43.1
Cc06_g01630 Coffea canephora HOM05D005866 ORTHO05D007078 9.4e-15 84.0 79 54.4
Phvul.010G008600 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 2.1e-14 82.8 100 46.0
CAN.G338.58 Capsicum annuum HOM05D005866 ORTHO05D007078 2.7e-14 82.4 75 54.7
Eucgr.B02792 Eucalyptus grandis HOM05D005866 ORTHO05D007078 2.7e-14 82.4 91 46.2
MSTRG.5595 Avicennia marina HOM05D005866 ORTHO05D007078 3.6e-14 82.0 83 50.6
Aqoxy1G00701 Aquilegia oxysepala HOM05D005866 ORTHO05D007078 4.7e-14 81.6 97 45.4
Haze_20956 Corylus avellana HOM05D005866 ORTHO05D007078 4.7e-14 81.6 97 44.3
EL10Ac6g13875 Beta vulgaris HOM05D005866 ORTHO05D007078 1.8e-13 79.7 91 44.0
Lalb_Chr07g0193301 Lupinus albus HOM05D005866 ORTHO05D007078 2.3e-13 79.3 99 41.4
Glyma.18G197300 Glycine max HOM05D005866 ORTHO05D007078 4.0e-13 78.6 97 42.3
Solyc09g014215.2 Solanum lycopersicum HOM05D005866 ORTHO05D007078 5.2e-13 78.2 71 54.9
PGSC0003DMG400020319 Solanum tuberosum HOM05D005866 ORTHO05D007078 5.2e-13 78.2 71 54.9
Glyma.07G145800 Glycine max HOM05D005866 ORTHO05D007078 6.8e-13 77.8 98 41.8
Psat7g247600 Pisum sativum HOM05D005866 ORTHO05D007078 8.8e-13 77.4 99 44.4
Lj1g0011685 Lotus japonicus HOM05D005866 ORTHO05D007078 1.2e-12 77.0 105 41.9
Medtr4g015010 Medicago truncatula HOM05D005866 ORTHO05D007078 1.5e-12 76.6 100 46.0
TPR.G1580 Trifolium pratense HOM05D005866 ORTHO05D007078 3.4e-12 75.5 99 41.4
TPR.G5230 Trifolium pratense HOM05D005866 ORTHO05D007078 3.4e-12 75.5 100 44.0
Actinidia05342 Actinidia chinensis HOM05D005866 ORTHO05D007078 4.4e-12 75.1 69 58.0
PSO384G0902 Papaver somniferum HOM05D005866 ORTHO05D007078 4.4e-12 75.1 78 48.7
PSO339G5866 Papaver somniferum HOM05D005866 ORTHO05D007078 7.5e-12 74.3 78 48.7
arahy.Tifrunner.gnm1.ann1.6JA19R Arachis hypogaea HOM05D005866 ORTHO05D007078 1.7e-11 73.2 98 40.8
Phvul.008G107300 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 2.2e-11 72.8 98 38.8
Ca_07614_v3 Cicer arietinum L. HOM05D005866 ORTHO05D007078 2.8e-11 72.4 99 40.4
Glyma.03G077300 Glycine max HOM05D005866 ORTHO05D007078 2.8e-11 72.4 71 53.5
THA.LOC104816219 Tarenaya hassleriana HOM05D005866 ORTHO05D007078 3.7e-11 72.0 66 51.5
arahy.Tifrunner.gnm1.ann1.Q1H550 Arachis hypogaea HOM05D005866 ORTHO05D007078 6.3e-11 71.2 98 39.8
VMungo1383G0141 Vigna mungo HOM05D005866 ORTHO05D007078 6.3e-11 71.2 98 40.8
Gorai.002G261300 Gossypium raimondii HOM05D005866 ORTHO05D007078 1.1e-10 70.5 75 48.0
ATR0618G104 Amborella trichopoda HOM05D005866 ORTHO05D007078 1.8e-10 69.7 93 38.7
Psat3g131120 Pisum sativum HOM05D005866 ORTHO05D007078 3.1e-10 68.9 99 37.4
arahy.Tifrunner.gnm1.ann1.F83RTD Arachis hypogaea HOM05D005866 ORTHO05D007078 5.4e-10 68.2 105 41.0
arahy.Tifrunner.gnm1.ann1.T33YJ3 Arachis hypogaea HOM05D005866 ORTHO05D007078 5.4e-10 68.2 105 41.0
Medtr7g067000 Medicago truncatula HOM05D005866 ORTHO05D007078 9.1e-10 67.4 99 39.4
CANSAT35G0638 Cannabis sativa HOM05D005866 ORTHO05D007078 3.5e-09 65.5 66 48.5
Zm00001eb367320 Zea mays HOM05D005866 ORTHO05D007078 3.5e-09 65.5 94 39.4
Peaxi162Scf00009g01923 Petunia axillaris HOM05D005866 ORTHO05D007078 4.5e-09 65.1 55 61.8
BcaC09g48006 Brassica carinata HOM05D005866 ORTHO05D007078 1.7e-08 63.2 75 45.3
Migut.J00221 Erythranthe guttata HOM05D005866 ORTHO05D007078 1.7e-08 63.2 74 45.9
arahy.Tifrunner.gnm1.ann1.LP8IIZ Arachis hypogaea HOM05D005866 ORTHO05D007078 2.9e-08 62.4 98 35.7
Os01g0853000 Oryza sativa ssp. japonica HOM05D005866 ORTHO05D007078 2.5e-07 59.3 92 38.0
arahy.Tifrunner.gnm1.ann1.QNAF0W Arachis hypogaea HOM05D005866 ORTHO05D007078 5.5e-07 58.2 98 35.7


User provided reference genes

Program Settings