Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 1.1e-63 246.5 124 100.0
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 2.4e-39 165.6 143 64.3
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 1.8e-31 139.4 139 59.0
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 8.0e-27 124.0 143 53.1
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 1.0e-26 123.6 138 52.9
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 1.5e-25 119.8 143 51.7
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 4.4e-25 118.2 138 52.2
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 7.5e-25 117.5 140 50.7
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 7.5e-25 117.5 144 50.7
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 9.7e-25 117.1 137 50.4
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 4.8e-24 114.8 141 50.4
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 4.1e-23 111.7 148 49.3
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 4.1e-23 111.7 142 50.0
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 2.7e-22 109.0 138 49.3
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 3.5e-22 108.6 138 50.0
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.0e-21 107.1 138 48.6
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 3.8e-21 105.1 140 46.4
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 5.0e-21 104.8 139 48.9
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 8.5e-21 104.0 136 49.3
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 1.5e-20 103.2 139 48.2
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 7.2e-20 100.9 137 48.9
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 2.1e-19 99.4 136 46.3
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 8.0e-19 97.4 135 45.2
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 8.0e-19 97.4 135 45.2
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 8.0e-19 97.4 141 46.1
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 1.4e-18 96.7 160 43.1
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 1.8e-18 96.3 141 45.4
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 2.3e-18 95.9 144 43.8
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 3.0e-18 95.5 131 46.6
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 4.0e-18 95.1 139 46.0
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 4.0e-18 95.1 133 49.6
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 5.2e-18 94.7 141 45.4
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 8.8e-18 94.0 138 47.8
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 8.8e-18 94.0 134 43.3
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 1.2e-17 93.6 137 46.7
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 1.2e-17 93.6 141 44.7
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 2.6e-17 92.4 128 46.9
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 2.6e-17 92.4 140 44.3
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 3.4e-17 92.0 130 46.2
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 3.4e-17 92.0 136 41.2
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 9.8e-17 90.5 133 45.9
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 2.2e-16 89.4 136 43.4
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 2.2e-16 89.4 138 44.2
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 6.3e-16 87.8 139 41.7
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 6.3e-16 87.8 137 44.5
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 6.3e-16 87.8 140 42.1
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 8.3e-16 87.4 133 42.9
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.4e-15 86.7 131 43.5
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 2.4e-15 85.9 141 40.4
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 2.4e-15 85.9 145 39.3
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 2.4e-15 85.9 134 42.5
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 2.4e-15 85.9 137 43.8
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 3.1e-15 85.5 135 42.2
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 3.1e-15 85.5 139 40.3
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 1.2e-14 83.6 138 42.8
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 1.2e-14 83.6 129 41.9
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.6e-14 83.2 136 41.9
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 2.7e-14 82.4 136 40.4
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 3.5e-14 82.0 140 45.7
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 3.5e-14 82.0 138 42.8
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 4.5e-14 81.6 100 50.0
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 5.9e-14 81.3 135 41.5
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 5.9e-14 81.3 136 41.2
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 5.9e-14 81.3 136 42.6
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 5.9e-14 81.3 135 42.2
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 7.7e-14 80.9 126 43.7
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 7.7e-14 80.9 137 37.2
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 1.0e-13 80.5 128 44.5
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 1.3e-13 80.1 142 40.8
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 1.3e-13 80.1 140 40.7
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 1.7e-13 79.7 130 44.6
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 1.7e-13 79.7 141 41.8
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.2e-13 79.3 136 42.6
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 2.2e-13 79.3 119 48.7
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 2.2e-13 79.3 136 41.9
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 6.5e-13 77.8 127 40.9
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 6.5e-13 77.8 149 36.9
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 6.5e-13 77.8 140 40.7
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 6.5e-13 77.8 140 40.7
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 8.5e-13 77.4 145 40.0
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 8.5e-13 77.4 149 38.9
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 8.5e-13 77.4 134 38.1
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 1.1e-12 77.0 134 41.0
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 1.5e-12 76.6 159 39.6
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 1.5e-12 76.6 138 39.1
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 1.5e-12 76.6 119 47.9
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 2.5e-12 75.9 137 40.9
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 2.5e-12 75.9 141 41.1
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 3.2e-12 75.5 133 41.4
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 5.5e-12 74.7 137 37.2
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 5.5e-12 74.7 139 37.4
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 5.5e-12 74.7 140 44.3
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 5.5e-12 74.7 126 39.7
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 9.4e-12 73.9 144 38.9
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 1.6e-11 73.2 140 36.4
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 2.1e-11 72.8 139 36.0
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 2.1e-11 72.8 139 36.0
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 3.6e-11 72.0 138 41.3
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 3.6e-11 72.0 126 41.3
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 4.7e-11 71.6 149 37.6
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 6.1e-11 71.2 140 40.0
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 8.0e-11 70.9 139 36.0
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 8.0e-11 70.9 158 37.3
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 1.4e-10 70.1 142 40.1
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 1.8e-10 69.7 140 39.3
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 1.8e-10 69.7 136 41.9
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 1.8e-10 69.7 142 39.4
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 2.3e-10 69.3 139 38.1
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 2.3e-10 69.3 144 38.2
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 4.0e-10 68.6 138 39.9
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 1.2e-09 67.0 66 62.1
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.5e-09 66.6 136 39.7
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 2.6e-09 65.9 141 36.9
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 3.4e-09 65.5 140 37.9
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 5.7e-09 64.7 140 37.1
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 7.5e-09 64.3 142 37.3
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 9.8e-09 63.9 131 37.4
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 1.7e-08 63.2 147 35.4
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 1.7e-08 63.2 145 35.9
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 1.7e-08 63.2 162 34.6
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 2.2e-08 62.8 148 31.8
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 3.1e-07 58.9 44 70.5
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 1.2e-06 57.0 143 35.0
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 1.6e-06 56.6 70 48.6
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 1.6e-06 56.6 136 38.2
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 2.7e-06 55.8 147 32.7
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 3.5e-06 55.5 148 34.5
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 3.5e-06 55.5 147 32.0
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 4.5e-06 55.1 138 34.8
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 5.9e-06 54.7 129 37.2


User provided reference genes

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