Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv36993 Davidia involucrata HOM05D005427 ORTHO05D006461 1.3e-126 456.4 230 100.0
Dinv21205 Davidia involucrata HOM05D005427 ORTHO05D006461 9.7e-103 377.1 230 85.7
GSVIVG01017423001 Vitis vinifera HOM05D005427 ORTHO05D006461 4.4e-79 298.5 236 66.5
QL06p037683 Quercus lobata HOM05D005427 ORTHO05D006461 3.7e-78 295.4 232 65.1
CSS0026502 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 8.2e-78 294.3 233 65.7
CSS0032221 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 4.1e-77 292.0 231 64.5
CSS0024088 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 3.5e-76 288.9 231 64.1
TAR628G1492 Trochodendron aralioides HOM05D001631 ORTHO05D001591 1.5e-74 283.5 233 63.1
Ciclev10026408m.g Citrus clementina HOM05D005427 ORTHO05D006461 9.4e-74 280.8 233 63.5
Prupe.6G211100 Prunus persica HOM05D005427 ORTHO05D006461 2.7e-73 279.3 220 63.2
Atru.chr3.1127 Acer truncatum HOM05D005427 ORTHO05D006461 4.7e-73 278.5 233 63.1
Atru.chr3.1136 Acer truncatum HOM05D005427 ORTHO05D006461 4.7e-73 278.5 233 63.1
Potri.017G091300 Populus trichocarpa HOM05D005427 ORTHO05D006461 4.7e-73 278.5 228 62.7
TAR376G0349 Trochodendron aralioides HOM05D005427 ORTHO05D006461 1.7e-70 270.0 230 60.4
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 2.2e-70 269.6 233 60.5
Thecc.01G082100 Theobroma cacao HOM05D005427 ORTHO05D006461 4.1e-69 265.4 230 61.7
CiPaw.08G147100 Carya illinoinensis HOM05D005427 ORTHO05D006461 5.9e-68 261.5 233 60.9
Gohir.A11G206966 Gossypium hirsutum HOM05D005427 ORTHO05D006461 1.3e-67 260.4 230 60.9
Rhsim07G0122400 Rhododendron simsii HOM05D005427 ORTHO05D006461 3.3e-66 255.8 241 56.8
Gorai.007G232600 Gossypium raimondii HOM05D005427 ORTHO05D006461 7.2e-66 254.6 230 59.6
Nn1g05775 Nelumbo nucifera HOM05D005427 ORTHO05D006461 4.7e-65 251.9 232 56.0
RcHm_v2.0_Chr2g0109701 Rosa chinensis HOM05D005427 ORTHO05D006461 4.7e-65 251.9 218 58.3
COL.COLO4_11665 Corchorus olitorius HOM05D005427 ORTHO05D006461 8.0e-65 251.1 221 60.2
Migut.F01758 Erythranthe guttata HOM05D005427 ORTHO05D006461 1.0e-64 250.8 218 57.3
PGSC0003DMG400012980 Solanum tuberosum HOM05D005427 ORTHO05D006461 1.4e-64 250.4 231 54.5
FvH4_1g18830 Fragaria vesca HOM05D005427 ORTHO05D006461 5.2e-64 248.4 218 55.5
Sopen09g003480 Solanum pennellii HOM05D005427 ORTHO05D006461 8.9e-64 247.7 231 54.1
PGR102G2470 Punica granatum HOM05D005427 ORTHO05D006461 1.2e-63 247.3 231 55.8
TWI74G0676 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 4.4e-63 245.4 224 59.4
Solyc09g008680.4 Solanum lycopersicum HOM05D005427 ORTHO05D006461 1.3e-62 243.8 231 53.2
Cfa001616 Carpinus fangiana HOM05D005427 ORTHO05D006461 2.4e-61 239.6 233 55.4
Manes.13G105100 Manihot esculenta HOM05D005427 ORTHO05D006461 9.2e-61 237.7 215 58.1
FAN23G0196 Fragaria x ananassa HOM05D005427 ORTHO05D006461 7.8e-60 234.6 228 51.8
Eucgr.H02348 Eucalyptus grandis HOM05D005427 ORTHO05D006461 3.9e-59 232.3 220 55.0
Gohir.D11G216500 Gossypium hirsutum HOM05D005427 ORTHO05D006461 1.1e-58 230.7 209 59.3
Aqoxy3G03178 Aquilegia oxysepala HOM05D005427 ORTHO05D006461 3.3e-58 229.2 231 51.5
RcHm_v2.0_Chr5g0054161 Rosa chinensis HOM05D005427 ORTHO05D006461 3.3e-58 229.2 218 54.6
THA.LOC104819282 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 9.5e-58 227.6 223 54.7
ECA233G5189 Erigeron canadensis HOM05D005427 ORTHO05D006461 1.6e-57 226.9 221 54.3
CAN.G1830.8 Capsicum annuum HOM05D005427 ORTHO05D006461 3.6e-57 225.7 222 53.2
FAN19G1732 Fragaria x ananassa HOM05D005427 ORTHO05D006461 4.7e-57 225.3 247 48.2
vmacro07282 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 4.7e-57 225.3 233 52.8
Cpa.g.sc3.369 Carica papaya HOM05D005427 ORTHO05D006461 8.0e-57 224.6 232 50.9
Nitab4.5_0004281g0090 Nicotiana tabacum HOM05D005427 ORTHO05D006461 1.0e-56 224.2 231 50.6
SGA_v2.0_scaffold70G23436 Striga asiatica HOM05D005427 ORTHO05D006461 1.0e-56 224.2 219 51.6
ClCG09G016510 Citrullus lanatus HOM05D005427 ORTHO05D006461 4.9e-54 215.3 222 52.3
CANSAT01G2304 Cannabis sativa HOM05D005427 ORTHO05D006461 1.9e-53 213.4 232 51.7
CsaV3_7G007450 Cucumis sativus L. HOM05D005427 ORTHO05D006461 1.9e-53 213.4 222 50.5
Duzib264G0001 Durio zibethinus HOM05D005427 ORTHO05D006461 3.2e-53 212.6 192 60.4
DCAR_006436 Daucus carota HOM05D005427 ORTHO05D006461 1.2e-52 210.7 204 58.8
SGA_v2.0_scaffold147G36350 Striga asiatica HOM05D005427 ORTHO05D006461 1.2e-52 210.7 219 50.2
Sed0018601 Sechium edule HOM05D005427 ORTHO05D006461 2.7e-52 209.5 224 47.8
SGA_v2.0_scaffold4G02171 Striga asiatica HOM05D005427 ORTHO05D006461 2.7e-52 209.5 219 50.2
MELO3C018556.2 Cucumis melo HOM05D005427 ORTHO05D006461 3.5e-52 209.1 232 48.3
vmacro05473 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 1.3e-51 207.2 262 47.7
Thhalv10010700m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 3.0e-51 206.1 220 51.4
HanXRQChr12g0368771 Helianthus annuus HOM05D005427 ORTHO05D006461 5.0e-51 205.3 205 52.2
Phvul.003G285200 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 1.5e-50 203.8 232 50.0
AT3G49645 Arabidopsis thaliana HOM05D005427 ORTHO05D006461 4.3e-50 202.2 218 51.4
Lj3g0020172 Lotus japonicus HOM05D005427 ORTHO05D006461 4.3e-50 202.2 228 50.4
AUR62041740 Chenopodium quinoa HOM05D005427 ORTHO05D006461 9.5e-50 201.1 225 51.6
CARHR158680 Cardamine hirsuta HOM05D005427 ORTHO05D006461 1.6e-49 200.3 219 51.6
AL7G47510 Arabidopsis lyrata HOM05D005427 ORTHO05D006461 2.1e-49 199.9 233 49.8
Thhalv10019696m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 2.8e-49 199.5 220 50.0
Glyma.08G273000 Glycine max HOM05D005427 ORTHO05D006461 3.6e-49 199.1 240 48.8
Ah.01g015840 Amaranthus hybridus HOM05D005427 ORTHO05D006461 3.1e-48 196.1 225 49.8
EL10Ac9g20957 Beta vulgaris HOM05D005427 ORTHO05D006461 3.1e-48 196.1 218 50.9
Hma1.2p1_0561F.1_g178960 Hydrangea macrophylla HOM05D005427 ORTHO05D006461 3.1e-48 196.1 160 65.6
Lalb_Chr04g0263231 Lupinus albus HOM05D005427 ORTHO05D006461 1.2e-47 194.1 236 46.6
Aa31LG4G18120 Aethionema arabicum HOM05D005427 ORTHO05D006461 1.5e-47 193.7 222 47.3
Phvul.003G285800 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 2.0e-47 193.4 232 48.3
Carub.0005s1599 Capsella rubella HOM05D005427 ORTHO05D006461 3.4e-47 192.6 221 46.6
PSO761G0697 Papaver somniferum HOM05D005427 ORTHO05D006461 3.4e-47 192.6 230 45.7
TPR.G15264 Trifolium pratense HOM05D005427 ORTHO05D006461 3.4e-47 192.6 243 47.7
Sc06g0009050 Simmondsia chinensis HOM05D005427 ORTHO05D006461 4.4e-47 192.2 224 47.3
Sp5g12450 Schrenkiella parvula HOM05D005427 ORTHO05D006461 5.8e-47 191.8 221 47.5
AUR62024067 Chenopodium quinoa HOM05D005427 ORTHO05D006461 9.8e-47 191.0 206 53.4
BcaC01g02424 Brassica carinata HOM05D005427 ORTHO05D006461 2.9e-46 189.5 220 47.3
C03p65440 Brassica napus HOM05D005427 ORTHO05D006461 2.9e-46 189.5 220 47.3
BolC3t18796H Brassica oleracea HOM05D005427 ORTHO05D006461 2.9e-46 189.5 220 47.3
AUR62012052 Chenopodium quinoa HOM05D005427 ORTHO05D006461 3.7e-46 189.1 210 51.4
MD01G1046300 Malus domestica HOM05D005427 ORTHO05D006461 4.9e-46 188.7 181 54.7
Peaxi162Scf00500g00116 Petunia axillaris HOM05D005427 ORTHO05D006461 4.9e-46 188.7 206 51.0
Peaxi162Scf01051g00142 Petunia axillaris HOM05D005427 ORTHO05D006461 6.4e-46 188.3 222 47.3
A06p28350 Brassica napus HOM05D005427 ORTHO05D006461 8.3e-46 188.0 220 47.3
BraA06t25777Z Brassica rapa HOM05D005427 ORTHO05D006461 8.3e-46 188.0 220 47.3
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 1.9e-45 186.8 231 44.2
BcaB01g00686 Brassica carinata HOM05D005427 ORTHO05D006461 4.1e-45 185.7 218 45.4
Hund15020 Selenicereus undatus HOM05D005427 ORTHO05D006461 5.4e-45 185.3 228 46.9
BraA07t29893Z Brassica rapa HOM05D005427 ORTHO05D006461 1.2e-44 184.1 220 44.5
Psat4g120800 Pisum sativum HOM05D005427 ORTHO05D006461 3.5e-44 182.6 244 43.9
Haze_16903 Corylus avellana HOM05D005427 ORTHO05D006461 4.6e-44 182.2 254 45.3
THA.LOC104799739 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 6.0e-44 181.8 240 42.9
Ah.01g003640 Amaranthus hybridus HOM05D000109 ORTHO05D000520 1.0e-43 181.0 221 46.2
AUR62019836 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.7e-43 180.3 224 46.4
BcaC07g39428 Brassica carinata HOM05D005427 ORTHO05D006461 3.0e-43 179.5 218 44.5
Hund13132 Selenicereus undatus HOM05D005427 ORTHO05D006461 3.9e-43 179.1 228 45.2
AL5G29490 Arabidopsis lyrata HOM05D007023 ORTHO05D008684 1.5e-42 177.2 216 48.6
Glyma.20G162400 Glycine max HOM05D005427 ORTHO05D006461 2.1e-41 173.3 234 42.7
A07p22100 Brassica napus HOM05D005427 ORTHO05D006461 8.1e-41 171.4 240 40.8
PSO210G5957 Papaver somniferum HOM05D005427 ORTHO05D006461 1.1e-40 171.0 220 44.5
Hund00873 Selenicereus undatus HOM05D005427 ORTHO05D006461 1.1e-40 171.0 208 46.6
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 1.7e-38 163.7 241 42.7
FAN27G1155 Fragaria x ananassa HOM05D005427 ORTHO05D006461 4.9e-38 162.2 217 41.0
Os10g0360900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 4.9e-38 162.2 219 38.8
BraA06t24896Z Brassica rapa HOM05D007023 ORTHO05D008684 8.3e-38 161.4 201 43.3
Medtr8g067265 Medicago truncatula HOM05D005427 ORTHO05D006461 8.3e-38 161.4 218 44.5
HPP92_024834 Vanilla planifolia HOM05D005427 ORTHO05D006461 8.3e-38 161.4 228 40.4
HPP92_026626 Vanilla planifolia HOM05D005427 ORTHO05D006461 8.3e-38 161.4 228 40.4
Zm00001eb210960 Zea mays HOM05D005427 ORTHO05D006461 8.3e-38 161.4 221 39.4
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 1.4e-37 160.6 272 39.7
C08p24660 Brassica napus HOM05D007023 ORTHO05D008684 1.4e-37 160.6 204 43.6
BolC8t50081H Brassica oleracea HOM05D007023 ORTHO05D008684 1.4e-37 160.6 204 43.6
Sabra17G0080400 Salix brachista HOM05D005427 ORTHO05D006461 5.4e-37 158.7 206 48.5
Lsat_1_v5_gn_8_18901 Lactuca sativa HOM05D005427 ORTHO05D006461 7.1e-37 158.3 244 43.0
Zm00001eb064010 Zea mays HOM05D005427 ORTHO05D006461 9.2e-37 157.9 250 38.4
FAN26G2664 Fragaria x ananassa HOM05D005427 ORTHO05D006461 8.6e-35 151.4 223 39.9
BcaB02g09598 Brassica carinata HOM05D005427 ORTHO05D006461 1.1e-34 151.0 221 40.7
Cc09_g03000 Coffea canephora HOM05D005427 ORTHO05D006461 3.3e-34 149.4 134 55.2
Phvul.002G065300 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 4.4e-31 139.0 174 47.7
A06p18060 Brassica napus HOM05D007023 ORTHO05D008684 9.9e-31 137.9 201 38.8
Os07g0264900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 9.9e-31 137.9 181 41.4
TWI77G0140 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 4.2e-29 132.5 115 57.4
Cc09_g02990 Coffea canephora HOM05D005427 ORTHO05D006461 1.5e-26 124.0 95 65.3
EL10Ac6g13479 Beta vulgaris HOM05D005427 ORTHO05D006461 1.9e-26 123.6 182 40.7
Actinidia11934 Actinidia chinensis HOM05D005427 ORTHO05D006461 2.5e-26 123.2 131 56.5
AagrBONN_evm.TU.Sc2ySwM_228.2937 Anthoceros agrestis HOM05D005427 ORTHO05D006461 4.3e-26 122.5 211 33.6
Nitab4.5_0006709g0040 Nicotiana tabacum HOM05D005427 ORTHO05D006461 3.1e-24 116.3 85 62.4
CSS0003252 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 6.9e-24 115.2 78 73.1
Rhsim10G0082400 Rhododendron simsii HOM05D005427 ORTHO05D006461 4.9e-22 109.0 76 67.1
VMungo1309G2225 Vigna mungo HOM05D005427 ORTHO05D006461 8.4e-22 108.2 138 48.6
MD00G1139600 Malus domestica HOM05D005427 ORTHO05D006461 1.9e-21 107.1 58 87.9
MD04G1240700 Malus domestica HOM05D005427 ORTHO05D006461 1.9e-21 107.1 58 87.9
Pp3c24_9930 Physcomitrium patens HOM05D005427 ORTHO05D006461 9.3e-21 104.8 226 27.9
MBI16_g26727_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 3.5e-20 102.8 90 54.4
Ah.16g109230 Amaranthus hybridus HOM05D005427 ORTHO05D006461 7.8e-20 101.7 107 48.6
MSTRG.375 Avicennia marina HOM05D005427 ORTHO05D006461 1.3e-19 100.9 90 56.7
Carub.0005s0959 Capsella rubella HOM05D005427 ORTHO05D006461 5.1e-19 99.0 105 51.4
SMO367G1008 Selaginella moellendorffii HOM05D005427 ORTHO05D006461 1.5e-18 97.4 186 29.6
MBI16_g14676_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 4.3e-18 95.9 167 37.1
SalBow7G4264 Salvia bowleyana HOM05D005427 ORTHO05D006461 7.3e-18 95.1 101 50.5
SEGI_00262 Sequoiadendron giganteum HOM05D005427 ORTHO05D006461 4.6e-12 75.9 108 38.9
Lsat_1_v5_gn_7_80981 Lactuca sativa HOM05D005427 ORTHO05D006461 6.7e-11 72.0 62 61.3
Mapoly0085s0034 Marchantia polymorpha HOM05D005427 ORTHO05D006461 6.7e-11 72.0 213 25.4
AagrBONN_evm.TU.Sc2ySwM_344.3300 Anthoceros agrestis HOM05D005427 ORTHO05D006461 1.9e-10 70.5 128 35.9
Mapoly0028s0128 Marchantia polymorpha HOM05D005427 ORTHO05D006461 2.8e-09 66.6 228 27.2
Mapoly0002s0147 Marchantia polymorpha HOM05D005427 ORTHO05D006461 4.8e-09 65.9 203 26.1


User provided reference genes

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