Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv36931 Davidia involucrata HOM05D003192 ORTHO05D003596 1.5e-261 906.0 593 100.0
Dinv13601 Davidia involucrata HOM05D003192 ORTHO05D003596 4.1e-121 439.5 601 62.6
Haze_03871 Corylus avellana HOM05D003192 ORTHO05D003596 1.6e-101 374.4 598 54.8
Cfa006881 Carpinus fangiana HOM05D003192 ORTHO05D003596 6.4e-98 362.5 596 54.5
CiPaw.08G140100 Carya illinoinensis HOM05D003192 ORTHO05D003596 7.5e-91 339.0 660 37.3
TAR381G0021 Trochodendron aralioides HOM05D003192 ORTHO05D003596 3.7e-90 336.7 636 45.1
QL06p035789 Quercus lobata HOM05D003192 ORTHO05D003596 6.6e-87 325.9 625 39.0
TAR625G0274 Trochodendron aralioides HOM05D003192 ORTHO05D003596 1.2e-83 315.1 525 48.6
CSS0015283 Camellia sinensis var. sinensis HOM05D003192 ORTHO05D003596 5.4e-81 306.2 443 46.0
Peaxi162Scf00191g00034 Petunia axillaris HOM05D003192 ORTHO05D003596 1.7e-79 301.2 618 38.3
Duzib147G1583 Durio zibethinus HOM05D003192 ORTHO05D003596 5.1e-79 299.7 604 43.0
Atru.chr3.1246 Acer truncatum HOM05D003192 ORTHO05D003596 3.3e-78 297.0 616 38.0
Nn5g29883 Nelumbo nucifera HOM05D003192 ORTHO05D003596 1.4e-76 291.6 637 47.7
Thecc.01G090500 Theobroma cacao HOM05D003192 ORTHO05D003596 4.0e-76 290.0 655 40.8
Sopen11g005420 Solanum pennellii HOM05D003192 ORTHO05D003596 3.8e-74 283.5 743 33.1
Duzib187G1957 Durio zibethinus HOM05D003192 ORTHO05D003596 4.9e-74 283.1 579 43.7
CAN.G1344.16 Capsicum annuum HOM05D003192 ORTHO05D003596 1.6e-72 278.1 744 32.1
Ciclev10024755m.g Citrus clementina HOM05D003192 ORTHO05D003596 2.1e-72 277.7 613 36.1
Potri.011G131500 Populus trichocarpa HOM05D003192 ORTHO05D003596 3.5e-72 276.9 577 41.2
CANSAT01G3047 Cannabis sativa HOM05D003192 ORTHO05D003596 6.6e-71 272.7 526 37.5
ClCG01G018360 Citrullus lanatus HOM05D003192 ORTHO05D003596 2.5e-70 270.8 690 32.3
Eucgr.I00559 Eucalyptus grandis HOM05D003192 ORTHO05D003596 8.1e-69 265.8 575 35.1
RcHm_v2.0_Chr2g0111201 Rosa chinensis HOM05D003192 ORTHO05D003596 1.2e-67 261.9 522 37.7
MELO3C007714.2 Cucumis melo HOM05D003192 ORTHO05D003596 2.6e-67 260.8 690 31.4
CsaV3_6G044990 Cucumis sativus L. HOM05D003192 ORTHO05D003596 4.2e-65 253.4 690 30.6
FAN19G3065 Fragaria x ananassa HOM05D003192 ORTHO05D003596 7.1e-65 252.7 522 36.8
Nitab4.5_0004153g0070 Nicotiana tabacum HOM05D003192 ORTHO05D003596 9.3e-65 252.3 707 33.2
Nitab4.5_0007624g0010 Nicotiana tabacum HOM05D003192 ORTHO05D003596 1.3e-63 248.4 645 43.6
Glyma.01G023100 Glycine max HOM05D003192 ORTHO05D003596 3.0e-63 247.3 697 30.7
vmacro13008 Vaccinium macrocarpon HOM05D003192 ORTHO05D003596 3.0e-63 247.3 610 33.8
Gorai.007G232500 Gossypium raimondii HOM05D003192 ORTHO05D003596 3.9e-63 246.9 599 38.9
Gohir.D11G216300 Gossypium hirsutum HOM05D003192 ORTHO05D003596 8.7e-63 245.7 599 39.2
FAN23G2850 Fragaria x ananassa HOM05D003192 ORTHO05D003596 2.5e-62 244.2 521 36.3
Glyma.18G147000 Glycine max HOM05D003192 ORTHO05D003596 5.6e-62 243.0 702 35.2
Sed0023170 Sechium edule HOM05D003192 ORTHO05D003596 9.6e-62 242.3 657 31.2
GSVIVG01005928001 Vitis vinifera HOM05D003192 ORTHO05D003596 1.3e-61 241.9 595 33.4
Glyma.08G279600 Glycine max HOM05D003192 ORTHO05D003596 2.1e-61 241.1 703 34.0
Cc07_g14090 Coffea canephora HOM05D003192 ORTHO05D003596 6.2e-61 239.6 676 33.0
Rhsim10G0172900 Rhododendron simsii HOM05D003192 ORTHO05D003596 2.4e-60 237.7 629 34.0
Sed0023722 Sechium edule HOM05D003192 ORTHO05D003596 4.0e-60 236.9 684 33.6
MSTRG.15688 Avicennia marina HOM05D003192 ORTHO05D003596 5.3e-60 236.5 586 33.1
Gohir.A11G207000 Gossypium hirsutum HOM05D003192 ORTHO05D003596 2.6e-59 234.2 599 38.4
Potri.001G415800 Populus trichocarpa HOM05D003192 ORTHO05D003596 5.8e-59 233.0 614 36.8
FvH4_1g19631 Fragaria vesca HOM05D003192 ORTHO05D003596 7.6e-59 232.6 515 35.3
Sabra16G0282500 Salix brachista HOM05D003192 ORTHO05D003596 9.9e-59 232.3 688 35.9
Prupe.6G201700 Prunus persica HOM05D003192 ORTHO05D003596 8.4e-58 229.2 534 35.6
Dinv16002 Davidia involucrata HOM05D003192 ORTHO05D003596 1.9e-57 228.0 603 36.0
FAN28G2653 Fragaria x ananassa HOM05D003192 ORTHO05D003596 1.9e-57 228.0 493 35.9
Sabra11G0118600 Salix brachista HOM05D003192 ORTHO05D003596 7.1e-57 226.1 679 36.4
Actinidia25308 Actinidia chinensis HOM05D003192 ORTHO05D003596 2.1e-56 224.6 691 31.8
Solyc11g010620.3 Solanum lycopersicum HOM05D003192 ORTHO05D003596 2.7e-56 224.2 731 33.4
FAN26G1555 Fragaria x ananassa HOM05D003192 ORTHO05D003596 6.0e-56 223.0 514 34.2
TWI53G1641 Tripterygium wilfordii HOM05D003192 ORTHO05D003596 2.3e-55 221.1 455 36.5
PGR031G3296 Punica granatum HOM05D003192 ORTHO05D003596 1.5e-54 218.4 599 32.2
Phvul.003G289000 Phaseolus vulgaris HOM05D003192 ORTHO05D003596 4.3e-54 216.9 619 38.9
Lalb_Chr05g0228511 Lupinus albus HOM05D003192 ORTHO05D003596 5.6e-54 216.5 522 34.1
Lj4g0006883 Lotus japonicus HOM05D003192 ORTHO05D003596 2.8e-53 214.2 642 31.6
Phvul.002G147100 Phaseolus vulgaris HOM05D003192 ORTHO05D003596 4.8e-53 213.4 673 30.6
MD01G1039400 Malus domestica HOM05D003192 ORTHO05D003596 9.0e-52 209.1 529 33.1
Lj2P534T19 Lonicera japonica HOM05D003192 ORTHO05D003596 1.2e-51 208.8 564 32.8
unitig_32.g10709 Utricularia gibba HOM05D003192 ORTHO05D003596 2.6e-51 207.6 617 32.9
VMungo0251G1378 Vigna mungo HOM05D003192 ORTHO05D003596 2.9e-50 204.1 622 37.0
TWI77G0115 Tripterygium wilfordii HOM05D003192 ORTHO05D003596 4.6e-48 196.8 793 27.7
PGSC0003DMG400016132 Solanum tuberosum HOM05D003192 ORTHO05D003596 1.9e-46 191.4 775 27.5
VMungo1215G1834 Vigna mungo HOM05D003192 ORTHO05D003596 2.8e-45 187.6 668 29.5
Manes.13G100000 Manihot esculenta HOM05D003192 ORTHO05D003596 2.4e-44 184.5 610 30.0
DCAR_014184 Daucus carota HOM05D003192 ORTHO05D003596 1.0e-42 179.1 651 32.1
Medtr5g032080 Medicago truncatula HOM05D003192 ORTHO05D003596 1.1e-41 175.6 599 29.7
Migut.K00798 Erythranthe guttata HOM05D003192 ORTHO05D003596 3.2e-41 174.1 516 33.1
MD10G1054400 Malus domestica HOM05D003192 ORTHO05D003596 3.0e-39 167.5 618 27.7
Aqoxy5G01385 Aquilegia oxysepala HOM05D003192 ORTHO05D003596 2.5e-38 164.5 510 31.0
MD05G1047500 Malus domestica HOM05D003192 ORTHO05D003596 3.3e-38 164.1 585 26.8
ECA238G4297 Erigeron canadensis HOM05D003192 ORTHO05D003596 1.1e-36 159.1 612 27.9
Hma1.2p1_1093F.1_g256220 Hydrangea macrophylla HOM05D003192 ORTHO05D003596 1.4e-36 158.7 602 28.2
Cfa005735 Carpinus fangiana HOM05D003192 ORTHO05D003596 1.8e-36 158.3 515 34.8
Lsat_1_v5_gn_2_70360 Lactuca sativa HOM05D003192 ORTHO05D003596 2.4e-36 157.9 720 29.7
arahy.Tifrunner.gnm1.ann1.88QBIW Arachis hypogaea HOM05D003192 ORTHO05D003596 9.0e-36 156.0 623 27.1
arahy.Tifrunner.gnm1.ann1.Y4FDPH Arachis hypogaea HOM05D003192 ORTHO05D003596 1.5e-35 155.2 623 27.1
TPR.G14606 Trifolium pratense HOM05D003192 ORTHO05D003596 2.0e-35 154.8 309 41.7
RcHm_v2.0_Chr6g0271001 Rosa chinensis HOM05D003192 ORTHO05D003596 2.6e-35 154.5 587 27.4
Gorai.007G058900 Gossypium raimondii HOM05D003192 ORTHO05D003596 7.7e-35 152.9 711 28.3
Medtr8g471150 Medicago truncatula HOM05D003192 ORTHO05D003596 7.7e-35 152.9 300 39.3
Ca_22705_v3 Cicer arietinum L. HOM05D003192 ORTHO05D003596 3.8e-34 150.6 605 26.9
CSS0015843 Camellia sinensis var. sinensis HOM05D003192 ORTHO05D003596 6.5e-34 149.8 651 30.0
CiPaw.05G029500 Carya illinoinensis HOM05D003192 ORTHO05D003596 6.5e-34 149.8 614 31.3
AL7G12570 Arabidopsis lyrata HOM05D003192 ORTHO05D003596 1.1e-33 149.1 619 24.7
Gohir.D11G053800 Gossypium hirsutum HOM05D003192 ORTHO05D003596 1.1e-33 149.1 713 28.8
AT4G38062 Arabidopsis thaliana HOM05D003192 ORTHO05D003596 1.4e-33 148.7 620 25.2
CSS0047518 Camellia sinensis var. sinensis HOM05D003192 ORTHO05D003596 1.4e-33 148.7 651 26.7
Sc03g0000330 Simmondsia chinensis HOM05D003192 ORTHO05D003596 1.4e-33 148.7 291 38.8
Gohir.A11G050500 Gossypium hirsutum HOM05D003192 ORTHO05D003596 4.2e-33 147.1 667 27.3
Carub.0007s0215 Capsella rubella HOM05D003192 ORTHO05D003596 5.5e-33 146.7 617 25.4
QL11p025213 Quercus lobata HOM05D003192 ORTHO05D003596 1.6e-32 145.2 726 25.3
THA.LOC104807671 Tarenaya hassleriana HOM05D003192 ORTHO05D003596 2.1e-32 144.8 602 26.4
TPR.G39012 Trifolium pratense HOM05D003192 ORTHO05D003596 1.0e-31 142.5 582 27.3
QL11p025224 Quercus lobata HOM05D003192 ORTHO05D003596 2.3e-31 141.4 526 33.1
Sc08g0003910 Simmondsia chinensis HOM05D003192 ORTHO05D003596 3.0e-31 141.0 601 25.1
Prupe.8G069900 Prunus persica HOM05D003192 ORTHO05D003596 6.7e-31 139.8 620 31.3
SGA_v2.0_scaffold115G32126 Striga asiatica HOM05D003192 ORTHO05D003596 1.1e-30 139.0 582 28.7
Psat4g119640 Pisum sativum HOM05D003192 ORTHO05D003596 1.5e-30 138.7 209 45.5
Ca_22609_v3 Cicer arietinum L. HOM05D003192 ORTHO05D003596 2.0e-30 138.3 622 28.8
Sp7g35710 Schrenkiella parvula HOM05D003192 ORTHO05D003596 3.3e-30 137.5 628 24.2
CARHR246480 Cardamine hirsuta HOM05D003192 ORTHO05D003596 9.7e-30 136.0 618 24.8
Lj2g0008675 Lotus japonicus HOM05D003192 ORTHO05D003596 6.3e-29 133.3 501 28.7
HanXRQChr11g0346961 Helianthus annuus HOM05D003192 ORTHO05D003596 1.8e-28 131.7 604 26.5
BcaC01g00350 Brassica carinata HOM05D003192 ORTHO05D003596 1.2e-27 129.0 622 24.3
AUR62012886 Chenopodium quinoa HOM05D003192 ORTHO05D003596 1.0e-26 125.9 639 24.4
Dinv24148 Davidia involucrata HOM05D003192 ORTHO05D003596 1.3e-26 125.6 606 30.2
Lj5C230T2 Lonicera japonica HOM05D003192 ORTHO05D003596 1.7e-26 125.2 598 30.8
Gohir.A02G144501 Gossypium hirsutum HOM05D003192 ORTHO05D003596 1.1e-25 122.5 540 28.3
MBI16_g12462_MAGBIO Magnolia biondii HOM05D003192 ORTHO05D003596 1.9e-25 121.7 667 31.9
DCAR_021912 Daucus carota HOM05D003192 ORTHO05D003596 3.2e-25 120.9 568 34.2
BraA08t34266Z Brassica rapa HOM05D003192 ORTHO05D003596 5.5e-25 120.2 582 25.6
A08p23070 Brassica napus HOM05D003192 ORTHO05D003596 1.2e-24 119.0 576 25.5
C03p78760 Brassica napus HOM05D003192 ORTHO05D003596 1.6e-24 118.6 613 23.8
AUR62027110 Chenopodium quinoa HOM05D003192 ORTHO05D003596 1.6e-24 118.6 666 24.3
BcaB03g12309 Brassica carinata HOM05D003192 ORTHO05D003596 2.1e-24 118.2 621 23.8
EL10Ac9g22072 Beta vulgaris HOM05D003192 ORTHO05D003596 1.0e-23 115.9 674 33.1
BolC3t20120H Brassica oleracea HOM05D003192 ORTHO05D003596 2.3e-23 114.8 593 24.3
Haze_10522 Corylus avellana HOM05D003192 ORTHO05D003596 8.8e-23 112.8 516 31.4
Gorai.003G037800 Gossypium raimondii HOM05D003192 ORTHO05D003596 1.1e-22 112.5 605 27.1
Ah.01g007410 Amaranthus hybridus HOM05D003192 ORTHO05D003596 2.6e-22 111.3 598 27.8
Gohir.D03G036033 Gossypium hirsutum HOM05D003192 ORTHO05D003596 9.7e-22 109.4 603 26.5
arahy.Tifrunner.gnm1.ann1.ND4N8X Arachis hypogaea HOM05D003192 ORTHO05D003596 1.3e-21 109.0 608 35.0
arahy.Tifrunner.gnm1.ann1.QT15T4 Arachis hypogaea HOM05D003192 ORTHO05D003596 1.3e-21 109.0 608 35.0
TPR.G9507 Trifolium pratense HOM05D003192 ORTHO05D003596 4.8e-21 107.1 625 25.6
Aa31LG6G15020 Aethionema arabicum HOM05D003192 ORTHO05D003596 1.1e-20 105.9 684 24.3
Glyma.09G199166 Glycine max HOM05D003192 ORTHO05D003596 1.1e-20 105.9 165 43.6
Duzib264G0048 Durio zibethinus HOM05D003192 ORTHO05D003596 2.4e-20 104.8 136 47.1
PSO063G1758 Papaver somniferum HOM05D003192 ORTHO05D003596 2.4e-20 104.8 695 22.7
PSO782G1877 Papaver somniferum HOM05D003192 ORTHO05D003596 1.2e-19 102.4 712 22.8
Glyma.15G058300 Glycine max HOM05D003192 ORTHO05D003596 1.5e-19 102.1 620 24.8
FvH4_2g11711 Fragaria vesca HOM05D003192 ORTHO05D003596 3.5e-19 100.9 588 23.3
ECA233G2454 Erigeron canadensis HOM05D000169 ORTHO05D003596 7.7e-19 99.8 286 30.4
Ah.01g023960 Amaranthus hybridus HOM05D003192 ORTHO05D003596 6.5e-18 96.7 581 23.6
FAN24G0742 Fragaria x ananassa HOM05D003192 ORTHO05D003596 8.5e-18 96.3 620 23.1
Actinidia02392 Actinidia chinensis HOM05D003192 ORTHO05D003596 1.6e-16 92.0 598 23.1
Ca_00164_v3 Cicer arietinum L. HOM05D003192 ORTHO05D003596 4.7e-16 90.5 622 27.0
Actinidia06515 Actinidia chinensis HOM05D003192 ORTHO05D003596 6.1e-16 90.1 195 39.0
Actinidia06514 Actinidia chinensis HOM05D003192 ORTHO05D003596 3.0e-15 87.8 297 30.0
Oeu063542.1 Olea europaea HOM05D003192 ORTHO05D003596 3.0e-15 87.8 597 21.4
Thhalv10027141m.g Eutrema salsugineum HOM05D003192 ORTHO05D003596 1.5e-14 85.5 468 24.6
Atru.chr6.1263 Acer truncatum HOM05D003192 ORTHO05D003596 2.6e-14 84.7 121 46.3
arahy.Tifrunner.gnm1.ann1.T6BZ3D Arachis hypogaea HOM05D003192 ORTHO05D003596 4.4e-14 84.0 613 24.6
MSTRG.20280 Avicennia marina HOM05D003192 ORTHO05D003596 1.3e-13 82.4 582 21.8
Lj2P534T21 Lonicera japonica HOM05D003192 ORTHO05D003596 1.7e-13 82.0 186 34.9
Lalb_Chr05g0216371 Lupinus albus HOM05D003192 ORTHO05D003596 2.2e-13 81.6 734 23.4
VMungo0299G0001 Vigna mungo HOM05D003192 ORTHO05D003596 6.3e-13 80.1 627 26.6
PSO210G4022 Papaver somniferum HOM05D003192 ORTHO05D003596 1.4e-12 79.0 292 28.8
Manes.13G086134 Manihot esculenta HOM05D003192 ORTHO05D003596 1.8e-12 78.6 108 40.7
FAN23G2642 Fragaria x ananassa HOM05D003192 ORTHO05D003596 3.1e-12 77.8 64 59.4
Glyma.13G256600 Glycine max HOM05D003192 ORTHO05D003596 4.1e-12 77.4 618 23.5
A09p12220 Brassica napus HOM05D003192 ORTHO05D014480 1.6e-11 75.5 93 43.0
Medtr2g009620 Medicago truncatula HOM05D003192 ORTHO05D003596 3.5e-11 74.3 601 23.6
Nitab4.5_0008998g0020 Nicotiana tabacum HOM05D003192 ORTHO05D003596 5.9e-11 73.6 591 21.8
Lj6g0024173 Lotus japonicus HOM05D003192 ORTHO05D003596 7.7e-11 73.2 309 30.1
BcaB03g12311 Brassica carinata HOM05D003192 ORTHO05D003596 1.0e-10 72.8 536 22.9
CANSAT54G2948 Cannabis sativa HOM05D003192 ORTHO05D003596 1.3e-10 72.4 623 23.9
Nitab4.5_0002017g0020 Nicotiana tabacum HOM05D003192 ORTHO05D003596 1.7e-10 72.0 591 22.7
arahy.Tifrunner.gnm1.ann1.CWW4UK Arachis hypogaea HOM05D003192 ORTHO05D003596 6.5e-10 70.1 612 24.0
Peaxi162Scf00003g00329 Petunia axillaris HOM05D003192 ORTHO05D003596 1.1e-09 69.3 533 27.6
PGSC0003DMG400037454 Solanum tuberosum HOM05D003192 ORTHO05D003596 1.5e-09 68.9 540 22.4
CDE01G0670 Ceratophyllum demersum HOM05D003192 ORTHO05D003596 7.2e-09 66.6 611 22.9
TAR636G1409 Trochodendron aralioides HOM05D003192 ORTHO05D003596 7.2e-09 66.6 89 49.4
ATR0767G239 Amborella trichopoda HOM05D003192 ORTHO05D003596 2.7e-08 64.7 351 25.6
HPP92_014211 Vanilla planifolia HOM05D003192 ORTHO05D003596 3.6e-08 64.3 296 25.0
PSO170G5608 Papaver somniferum HOM05D003192 ORTHO05D003596 6.1e-08 63.5 598 34.8
Solyc10g047540.3 Solanum lycopersicum HOM05D003192 ORTHO05D003596 6.1e-08 63.5 205 27.8
Zm00001eb053540 Zea mays HOM05D003192 ORTHO05D003596 8.0e-08 63.2 642 21.0
HPP92_026470 Vanilla planifolia HOM05D003192 ORTHO05D003596 1.0e-07 62.8 193 29.0
SEGI_05807 Sequoiadendron giganteum HOM05D003192 ORTHO05D003596 2.3e-07 61.6 330 26.4
Phvul.006G201900 Phaseolus vulgaris HOM05D003192 ORTHO05D003596 3.0e-07 61.2 650 22.9
TPR.G29979 Trifolium pratense HOM05D003192 ORTHO05D003596 1.2e-06 59.3 79 45.6
Duzib264G0894 Durio zibethinus HOM05D003192 ORTHO05D003596 1.5e-06 58.9 86 44.2
Psat1g214080 Pisum sativum HOM05D003192 ORTHO05D003596 2.0e-06 58.5 288 25.3


User provided reference genes

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