Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv36923 Davidia involucrata HOM05D005781 ORTHO05D006835 3.7e-44 181.0 84 100.0
Dinv12261 Davidia involucrata HOM05D005781 ORTHO05D006835 2.2e-36 155.2 84 81.0
Rhsim06G0009100 Rhododendron simsii HOM05D005781 ORTHO05D006835 2.0e-34 148.7 85 78.8
Rhsim13G0061400 Rhododendron simsii HOM05D005781 ORTHO05D006835 5.9e-34 147.1 85 78.8
Oeu052918.1 Olea europaea HOM05D005781 ORTHO05D006835 1.9e-32 142.1 84 76.2
Cc05_g05310 Coffea canephora HOM05D005781 ORTHO05D006835 3.3e-32 141.4 84 75.0
Thecc.01G232600 Theobroma cacao HOM05D005781 ORTHO05D006835 2.1e-31 138.7 86 75.6
Cfa015971 Carpinus fangiana HOM05D005781 ORTHO05D006835 6.2e-31 137.1 82 75.6
COL.COLO4_20773 Corchorus olitorius HOM05D005781 ORTHO05D006835 8.0e-31 136.7 86 74.4
Ciclev10023034m.g Citrus clementina HOM05D005781 ORTHO05D006835 1.4e-30 136.0 86 75.6
CSS0033648 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 1.8e-30 135.6 72 83.3
PGR031G1812 Punica granatum HOM05D005781 ORTHO05D006835 1.8e-30 135.6 84 71.4
Manes.02G161400 Manihot esculenta HOM05D005781 ORTHO05D006835 4.0e-30 134.4 86 75.6
CSS0000543 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 5.2e-30 134.0 72 81.9
COL.COLO4_33816 Corchorus olitorius HOM05D005781 ORTHO05D006835 5.2e-30 134.0 86 72.1
CANSAT54G0055 Cannabis sativa HOM05D005781 ORTHO05D006835 1.2e-29 132.9 84 70.2
CiPaw.06G025900 Carya illinoinensis HOM05D005781 ORTHO05D006835 1.2e-29 132.9 84 72.6
Hund27185 Selenicereus undatus HOM05D005781 ORTHO05D006835 1.2e-29 132.9 88 70.5
THA.LOC104825391 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 1.2e-29 132.9 86 72.1
Duzib138G0305 Durio zibethinus HOM05D005781 ORTHO05D006835 2.0e-29 132.1 86 73.3
Gohir.D07G208300 Gossypium hirsutum HOM05D005781 ORTHO05D006835 2.0e-29 132.1 86 73.3
Manes.01G244300 Manihot esculenta HOM05D005781 ORTHO05D006835 2.0e-29 132.1 86 74.4
Gohir.A07G202100 Gossypium hirsutum HOM05D005781 ORTHO05D006835 2.6e-29 131.7 86 72.1
Atru.chr1.3778 Acer truncatum HOM05D005781 ORTHO05D006835 3.4e-29 131.3 86 72.1
Gohir.D08G211000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 3.4e-29 131.3 86 69.8
Gorai.004G223700 Gossypium raimondii HOM05D005781 ORTHO05D006835 3.4e-29 131.3 86 69.8
Prupe.6G320800 Prunus persica HOM05D005781 ORTHO05D006835 5.8e-29 130.6 84 70.2
ClCG05G000700 Citrullus lanatus HOM05D005781 ORTHO05D006835 7.5e-29 130.2 84 73.8
Gohir.A08G193000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 7.5e-29 130.2 86 68.6
Sed0027756 Sechium edule HOM05D005781 ORTHO05D006835 9.8e-29 129.8 84 72.6
Gorai.001G235000 Gossypium raimondii HOM05D005781 ORTHO05D006835 1.3e-28 129.4 86 70.9
Sopen07g026470 Solanum pennellii HOM05D005781 ORTHO05D006835 1.3e-28 129.4 84 69.0
vmacro02893 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 1.3e-28 129.4 83 71.1
Sed0023332 Sechium edule HOM05D005781 ORTHO05D006835 1.7e-28 129.0 84 71.4
MD04G1200700 Malus domestica HOM05D005781 ORTHO05D006835 2.9e-28 128.3 83 68.7
MD12G1213200 Malus domestica HOM05D005781 ORTHO05D006835 3.7e-28 127.9 83 67.5
Nn8g40131 Nelumbo nucifera HOM05D005781 ORTHO05D006835 3.7e-28 127.9 84 70.2
Potri.001G082000 Populus trichocarpa HOM05D005781 ORTHO05D006835 3.7e-28 127.9 86 70.9
DCAR_022248 Daucus carota HOM05D005781 ORTHO05D006835 6.4e-28 127.1 84 66.7
Migut.H01206 Erythranthe guttata HOM05D005781 ORTHO05D006835 8.3e-28 126.7 90 68.9
CsaV3_3G007920 Cucumis sativus L. HOM05D005781 ORTHO05D006835 1.1e-27 126.3 83 69.9
Oeu034339.1 Olea europaea HOM05D005781 ORTHO05D006835 1.1e-27 126.3 84 70.2
DCAR_003312 Daucus carota HOM05D005781 ORTHO05D006835 1.4e-27 125.9 84 67.9
Sc01g0002510 Simmondsia chinensis HOM05D005781 ORTHO05D006835 2.4e-27 125.2 84 70.2
TWI63G1301 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 2.4e-27 125.2 86 69.8
Eucgr.D02385 Eucalyptus grandis HOM05D005781 ORTHO05D006835 3.2e-27 124.8 85 68.2
Hma1.2p1_0841F.1_g227020 Hydrangea macrophylla HOM05D005781 ORTHO05D006835 3.2e-27 124.8 73 80.8
Nn6g33491 Nelumbo nucifera HOM05D005781 ORTHO05D006835 3.2e-27 124.8 84 69.0
Ah.04g154640 Amaranthus hybridus HOM05D005781 ORTHO05D006835 4.1e-27 124.4 88 67.0
Lj3g0001466 Lotus japonicus HOM05D005781 ORTHO05D006835 9.2e-27 123.2 84 69.0
Aqoxy5G00270 Aquilegia oxysepala HOM05D005781 ORTHO05D006835 1.2e-26 122.9 83 68.7
EL10Ac7g17336 Beta vulgaris HOM05D005781 ORTHO05D006835 1.6e-26 122.5 87 64.4
Zm00001eb109340 Zea mays HOM05D005781 ORTHO05D006835 2.0e-26 122.1 84 66.7
MELO3C006010.2 Cucumis melo HOM05D005781 ORTHO05D006835 4.6e-26 120.9 83 66.3
Os01g0258600 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 4.6e-26 120.9 84 64.3
TWI38G0894 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 6.0e-26 120.6 86 68.6
MBI09_g43998_MAGBIO Magnolia biondii HOM05D005781 ORTHO05D006835 1.3e-25 119.4 83 68.7
Lalb_Chr13g0300501 Lupinus albus HOM05D005781 ORTHO05D006835 1.7e-25 119.0 84 65.5
Lj4g0026259 Lotus japonicus HOM05D005781 ORTHO05D006835 3.0e-25 118.2 84 67.9
PGSC0003DMG400026192 Solanum tuberosum HOM05D005781 ORTHO05D006835 3.0e-25 118.2 84 63.1
ECA247G2075 Erigeron canadensis HOM05D005781 ORTHO05D006835 5.0e-25 117.5 85 63.5
Lj4g0019743 Lotus japonicus HOM05D005781 ORTHO05D006835 5.0e-25 117.5 84 67.9
Rhsim06G0009300 Rhododendron simsii HOM05D005781 ORTHO05D006835 6.6e-25 117.1 73 74.0
vmacro12515 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 8.6e-25 116.7 74 71.6
QL04p074672 Quercus lobata HOM05D005781 ORTHO05D006835 1.1e-24 116.3 81 67.9
Phvul.002G194100 Phaseolus vulgaris HOM05D005781 ORTHO05D006835 1.5e-24 115.9 84 64.3
RcHm_v2.0_Chr3g0455721 Rosa chinensis HOM05D005781 ORTHO05D006835 1.5e-24 115.9 84 64.3
unitig_0.g2200 Utricularia gibba HOM05D005781 ORTHO05D006835 1.9e-24 115.5 71 71.8
Glyma.05G129800 Glycine max HOM05D005781 ORTHO05D006835 4.3e-24 114.4 84 61.9
Ca_21653_v3 Cicer arietinum L. HOM05D005781 ORTHO05D006835 5.6e-24 114.0 84 61.9
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 5.6e-24 114.0 84 63.1
Haze_00504 Corylus avellana HOM05D005781 ORTHO05D006835 7.3e-24 113.6 72 72.2
Glyma.08G084500 Glycine max HOM05D005781 ORTHO05D006835 7.3e-24 113.6 84 61.9
Cfa011814 Carpinus fangiana HOM05D005781 ORTHO05D006835 1.2e-23 112.8 84 64.3
arahy.Tifrunner.gnm1.ann1.EVJW84 Arachis hypogaea HOM05D005781 ORTHO05D006835 1.6e-23 112.5 84 63.1
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 1.6e-23 112.5 84 61.9
FAN09G0731 Fragaria x ananassa HOM05D005781 ORTHO05D006835 1.6e-23 112.5 84 61.9
Lsat_1_v5_gn_9_14361 Lactuca sativa HOM05D005781 ORTHO05D006835 1.6e-23 112.5 86 64.0
Atru.chr5.698 Acer truncatum HOM05D005781 ORTHO05D006835 2.1e-23 112.1 83 67.5
CDE02G0151 Ceratophyllum demersum HOM05D005781 ORTHO05D006835 2.1e-23 112.1 84 61.9
Medtr4g115740 Medicago truncatula HOM05D005781 ORTHO05D006835 2.8e-23 111.7 84 61.9
RcHm_v2.0_Chr1g0322091 Rosa chinensis HOM05D005781 ORTHO05D006835 8.1e-23 110.2 82 62.2
Nitab4.5_0003429g0070 Nicotiana tabacum HOM05D005781 ORTHO05D006835 1.8e-22 109.0 78 61.5
Cpa.g.c32851 Carica papaya HOM05D005781 ORTHO05D006835 3.1e-22 108.2 74 71.6
Peaxi162Scf00007g01414 Petunia axillaris HOM05D005781 ORTHO05D006835 3.1e-22 108.2 72 68.1
Zm00001eb374690 Zea mays HOM05D005781 ORTHO05D006835 3.1e-22 108.2 66 71.2
Psat4g033600 Pisum sativum HOM05D005781 ORTHO05D006835 4.0e-22 107.8 84 58.3
Nitab4.5_0001134g0180 Nicotiana tabacum HOM05D005781 ORTHO05D006835 6.8e-22 107.1 80 61.2
THA.LOC104825885 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 1.5e-21 105.9 74 67.6
Atru.chr1.3777 Acer truncatum HOM05D005781 ORTHO05D006835 2.6e-21 105.1 88 63.6
Actinidia11611 Actinidia chinensis HOM05D005781 ORTHO05D006835 9.9e-21 103.2 78 62.8
Gohir.D05G278050 Gossypium hirsutum HOM05D005781 ORTHO05D006835 9.9e-21 103.2 74 63.5
Gorai.009G291400 Gossypium raimondii HOM05D005781 ORTHO05D006835 9.9e-21 103.2 74 63.5
Sabra01G0058900 Salix brachista HOM05D005781 ORTHO05D006835 9.9e-21 103.2 74 67.6
Solyc07g052913.1 Solanum lycopersicum HOM05D005781 ORTHO05D006835 1.3e-20 102.8 74 62.2
Nitab4.5_0008807g0010 Nicotiana tabacum HOM05D005781 ORTHO05D006835 1.7e-20 102.4 72 63.9
Os06g0184100 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 3.2e-19 98.2 72 61.1
SalBow1G0716 Salvia bowleyana HOM05D005781 ORTHO05D006835 3.2e-19 98.2 85 57.6
Thhalv10015111m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 1.6e-18 95.9 76 59.2
arahy.Tifrunner.gnm1.ann1.V38LZ0 Arachis hypogaea HOM05D005781 ORTHO05D006835 4.6e-18 94.4 120 44.2
BolC3t13430H Brassica oleracea HOM05D005781 ORTHO05D006835 4.6e-18 94.4 85 49.4
Thhalv10022933m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 4.6e-18 94.4 77 55.8
Haze_11591 Corylus avellana HOM05D005781 ORTHO05D006835 7.8e-18 93.6 61 68.9
Sp6g27160 Schrenkiella parvula HOM05D005781 ORTHO05D006835 1.0e-17 93.2 76 57.9
BcaB01g05237 Brassica carinata HOM05D005781 ORTHO05D006835 1.7e-17 92.4 77 54.5
C03p09360 Brassica napus HOM05D005781 ORTHO05D006835 1.7e-17 92.4 77 54.5
BcaB01g04964 Brassica carinata HOM05D005781 ORTHO05D006835 2.3e-17 92.0 64 60.9
A03p08090 Brassica napus HOM05D005781 ORTHO05D006835 3.0e-17 91.7 76 53.9
BraA03t10134Z Brassica rapa HOM05D005781 ORTHO05D006835 3.0e-17 91.7 76 53.9
ATR0626G090 Amborella trichopoda HOM05D005781 ORTHO05D006835 1.1e-16 89.7 72 61.1
CARHR196210 Cardamine hirsuta HOM05D005781 ORTHO05D006835 1.5e-16 89.4 65 58.5
TPR.G40143 Trifolium pratense HOM05D005781 ORTHO05D006835 1.5e-16 89.4 72 56.9
BcaB07g31735 Brassica carinata HOM05D005781 ORTHO05D006835 2.5e-16 88.6 75 50.7
Gohir.A05G276166 Gossypium hirsutum HOM05D005781 ORTHO05D006835 3.3e-16 88.2 74 58.1
Carub.0006s1516 Capsella rubella HOM05D005781 ORTHO05D006835 4.3e-16 87.8 64 56.2
AT5G16950 Arabidopsis thaliana HOM05D005781 ORTHO05D006835 7.3e-16 87.0 64 56.2
AL6G27950 Arabidopsis lyrata HOM05D005781 ORTHO05D006835 9.5e-16 86.7 64 56.2
Medtr5g009535 Medicago truncatula HOM05D005781 ORTHO05D006835 1.2e-15 86.3 72 56.9
SGA_v2.0_scaffold57G20299 Striga asiatica HOM05D005781 ORTHO05D006835 1.2e-15 86.3 56 69.6
Aa31LG11G12650 Aethionema arabicum HOM05D005781 ORTHO05D006835 2.8e-15 85.1 61 62.3
HanXRQChr08g0228461 Helianthus annuus HOM05D005781 ORTHO05D006835 1.1e-14 83.2 58 67.2
Zm00001eb217150 Zea mays HOM05D000360 ORTHO05D006835 2.2e-12 75.5 54 61.1
Zm00001eb352440 Zea mays HOM05D000360 ORTHO05D006835 1.4e-11 72.8 54 59.3
SalBow1G0213 Salvia bowleyana HOM05D005781 ORTHO05D006835 1.9e-11 72.4 72 54.2
Pp3c9_710 Physcomitrium patens HOM05D005781 ORTHO05D006835 2.4e-11 72.0 53 60.4
VMungo0251G3003 Vigna mungo HOM05D005781 ORTHO05D006835 1.6e-10 69.3 61 52.5
A09p11320 Brassica napus HOM05D005781 ORTHO05D006835 7.8e-10 67.0 61 45.9
BraA09t36770Z Brassica rapa HOM05D005781 ORTHO05D006835 7.8e-10 67.0 61 45.9
Mapoly0010s0158 Marchantia polymorpha HOM05D005781 ORTHO05D006835 5.1e-09 64.3 57 52.6
BcaC04g22979 Brassica carinata HOM05D005781 ORTHO05D006835 7.3e-08 60.5 49 49.0
BcaB01g05235 Brassica carinata HOM05D005781 ORTHO05D006835 6.2e-07 57.4 41 56.1
Zm00001eb318190 Zea mays HOM05D000360 ORTHO05D006835 1.1e-06 56.6 43 55.8
C09p13330 Brassica napus HOM05D005781 ORTHO05D006835 3.1e-06 55.1 63 36.5
BolC9t54226H Brassica oleracea HOM05D005781 ORTHO05D006835 3.1e-06 55.1 63 36.5


User provided reference genes

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