Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv36831 Davidia involucrata HOM05D007277 ORTHO05D006336 6.2e-139 497.7 290 100.0
Dinv38624 Davidia involucrata HOM05D007277 ORTHO05D006336 5.2e-37 159.1 121 71.1
CSS0000915 Camellia sinensis var. sinensis HOM05D007277 ORTHO05D006336 3.4e-20 103.2 99 55.6
Actinidia22592 Actinidia chinensis HOM05D007277 ORTHO05D006336 9.9e-20 101.7 98 52.0
Dinv36833 Davidia involucrata HOM05D007277 ORTHO05D006336 1.1e-18 98.2 133 51.1
Rhsim12G0165400 Rhododendron simsii HOM05D007277 ORTHO05D006336 1.4e-18 97.8 101 52.5
QL10p051898 Quercus lobata HOM05D007277 ORTHO05D006336 1.9e-18 97.4 102 51.0
Actinidia24268 Actinidia chinensis HOM05D007277 ORTHO05D006336 1.6e-17 94.4 90 51.1
QL10p012835 Quercus lobata HOM05D007277 ORTHO05D006336 2.1e-17 94.0 102 52.0
Actinidia24271 Actinidia chinensis HOM05D007277 ORTHO05D006336 1.9e-15 87.4 84 48.8
QL07p042995 Quercus lobata HOM05D007277 ORTHO05D006336 1.3e-14 84.7 99 47.5
Actinidia10434 Actinidia chinensis HOM05D007277 ORTHO05D006336 1.6e-14 84.3 101 46.5
QL10p052020 Quercus lobata HOM05D007277 ORTHO05D006336 2.1e-14 84.0 102 49.0
QL07p042879 Quercus lobata HOM05D007277 ORTHO05D006336 8.1e-14 82.0 112 43.8
QL07p042903 Quercus lobata HOM05D007277 ORTHO05D006336 1.4e-13 81.3 98 49.0
Ciclev10023402m.g Citrus clementina HOM05D007277 ORTHO05D006336 1.8e-13 80.9 105 41.9
QL07p042908 Quercus lobata HOM05D007277 ORTHO05D006336 6.9e-13 79.0 178 34.8
Ciclev10024167m.g Citrus clementina HOM05D007277 ORTHO05D006336 9.0e-13 78.6 107 43.0
QL07p042928 Quercus lobata HOM05D007277 ORTHO05D006336 9.0e-13 78.6 97 45.4
Cfa002615 Carpinus fangiana HOM05D007277 ORTHO05D006336 1.2e-12 78.2 99 42.4
Dinv36835 Davidia involucrata HOM05D007277 ORTHO05D006336 1.2e-12 78.2 56 71.4
Ciclev10029817m.g Citrus clementina HOM05D007277 ORTHO05D006336 2.6e-12 77.0 107 42.1
QL11p034196 Quercus lobata HOM05D007277 ORTHO05D006336 2.6e-12 77.0 117 42.7
Atru.chr9.2085 Acer truncatum HOM05D007277 ORTHO05D006336 3.4e-12 76.6 102 44.1
Ciclev10023596m.g Citrus clementina HOM05D010635 ORTHO05D006336 4.5e-12 76.3 106 40.6
Haze_24862 Corylus avellana HOM05D007277 ORTHO05D006336 7.6e-12 75.5 101 40.6
Haze_27687 Corylus avellana HOM05D007277 ORTHO05D006336 7.6e-12 75.5 99 40.4
Haze_27688 Corylus avellana HOM05D007277 ORTHO05D006336 7.6e-12 75.5 99 40.4
Cfa002614 Carpinus fangiana HOM05D007277 ORTHO05D006336 3.8e-11 73.2 99 41.4
TAR636G1532 Trochodendron aralioides HOM05D012741 ORTHO05D006336 3.8e-11 73.2 101 38.6
QL07p042983 Quercus lobata HOM05D007277 ORTHO05D006336 4.9e-11 72.8 104 42.3
Cpa.g.sc3.210 Carica papaya HOM05D007277 ORTHO05D006336 1.1e-10 71.6 97 47.4
Cpa.g.sc3.199 Carica papaya HOM05D007277 ORTHO05D006336 2.4e-10 70.5 97 46.4
Haze_24863 Corylus avellana HOM05D000010 ORTHO05D006336 3.2e-10 70.1 107 38.3
Haze_24866 Corylus avellana HOM05D007277 ORTHO05D006336 3.2e-10 70.1 112 36.6
QL07p042874 Quercus lobata HOM05D007277 ORTHO05D006336 3.2e-10 70.1 97 44.3
QL10p047937 Quercus lobata HOM05D007277 ORTHO05D006336 3.2e-10 70.1 103 37.9
Atru.chr4.1305 Acer truncatum HOM05D010298 ORTHO05D006336 7.1e-10 68.9 157 28.0
Ciclev10023444m.g Citrus clementina HOM05D007277 ORTHO05D006336 1.2e-09 68.2 105 37.1
Cfa021203 Carpinus fangiana HOM05D007277 ORTHO05D006336 4.6e-09 66.2 104 38.5
QL10p048111 Quercus lobata HOM05D010635 ORTHO05D006336 4.6e-09 66.2 103 35.9
Cpa.g.sc3.209 Carica papaya HOM05D007277 ORTHO05D006336 6.0e-09 65.9 85 49.4
DCAR_010189 Daucus carota HOM05D007277 ORTHO05D006336 6.0e-09 65.9 102 41.2
QL02p080510 Quercus lobata HOM05D007277 ORTHO05D006336 1.3e-08 64.7 105 37.1
QL09p028728 Quercus lobata HOM05D007277 ORTHO05D006336 2.3e-08 63.9 99 39.4
Thecc.03G110900 Theobroma cacao HOM05D007277 ORTHO05D006336 3.0e-08 63.5 103 42.7
Atru.chr4.1303 Acer truncatum HOM05D010298 ORTHO05D012539 3.9e-08 63.2 96 39.6
FAN13G2869 Fragaria x ananassa HOM05D007277 ORTHO05D006336 6.7e-08 62.4 98 38.8
Potri.017G021796 Populus trichocarpa HOM05D010635 ORTHO05D006336 8.7e-08 62.0 105 39.0
MD11G1013400 Malus domestica HOM05D007277 ORTHO05D006336 1.9e-07 60.8 115 33.0
TAR636G3203 Trochodendron aralioides HOM05D012741 ORTHO05D006336 4.3e-07 59.7 114 35.1
COL.COLO4_28831 Corchorus olitorius HOM05D007277 ORTHO05D006336 7.4e-07 58.9 104 41.3
FAN08G1781 Fragaria x ananassa HOM05D007277 ORTHO05D006336 7.4e-07 58.9 101 36.6
Potri.017G019932 Populus trichocarpa HOM05D010635 ORTHO05D006336 9.6e-07 58.5 105 35.2
FAN18G2501 Fragaria x ananassa HOM05D007277 ORTHO05D006336 1.3e-06 58.2 109 38.5
FAN18G2870 Fragaria x ananassa HOM05D000423 ORTHO05D000284 1.3e-06 58.2 90 36.7
RcHm_v2.0_Chr7g0241491 Rosa chinensis HOM05D007277 ORTHO05D006336 1.3e-06 58.2 99 37.4
Ciclev10024327m.g Citrus clementina HOM05D007277 ORTHO05D006336 1.6e-06 57.8 91 39.6
Sabra17G0002100 Salix brachista HOM05D010635 ORTHO05D006336 1.6e-06 57.8 105 36.2
TAR636G1074 Trochodendron aralioides HOM05D012741 ORTHO05D006336 2.1e-06 57.4 108 32.4
Sabra17G0014600 Salix brachista HOM05D010635 ORTHO05D006336 2.8e-06 57.0 105 36.2
FvH4_5g13170 Fragaria vesca HOM05D007277 ORTHO05D006336 3.7e-06 56.6 109 36.7
FvH4_5g13230 Fragaria vesca HOM05D007277 ORTHO05D006336 3.7e-06 56.6 109 37.6
Gohir.D07G062800 Gossypium hirsutum HOM05D007277 ORTHO05D006336 3.7e-06 56.6 113 34.5
Sabra07G0108200 Salix brachista HOM05D010635 ORTHO05D006336 3.7e-06 56.6 104 39.4
Gohir.A07G058000 Gossypium hirsutum HOM05D007277 ORTHO05D006336 4.8e-06 56.2 113 35.4
FvH4_5g13140 Fragaria vesca HOM05D007277 ORTHO05D006336 6.2e-06 55.8 109 36.7
FAN18G3246 Fragaria x ananassa HOM05D007277 ORTHO05D006336 6.2e-06 55.8 109 36.7
Gorai.001G066300 Gossypium raimondii HOM05D007277 ORTHO05D006336 8.1e-06 55.5 115 34.8


User provided reference genes

Program Settings