Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 8.7e-105 383.6 194 100.0
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 4.6e-90 334.7 194 87.1
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.0e-89 333.6 195 87.7
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 2.3e-89 332.4 198 84.8
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 6.7e-89 330.9 194 87.1
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 8.8e-89 330.5 194 86.6
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 1.5e-88 329.7 194 86.6
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 2.0e-88 329.3 194 86.6
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 1.7e-87 326.2 194 85.6
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 1.7e-87 326.2 194 85.1
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 3.7e-87 325.1 195 85.6
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 3.7e-87 325.1 198 83.3
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 4.8e-87 324.7 194 84.5
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 8.2e-87 323.9 196 85.2
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 1.1e-86 323.6 198 84.3
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 1.1e-86 323.6 199 85.4
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 2.4e-86 322.4 194 83.5
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 2.4e-86 322.4 194 85.6
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 3.1e-86 322.0 194 85.6
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 4.1e-86 321.6 194 83.0
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 6.9e-86 320.9 192 84.4
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 6.9e-86 320.9 194 83.5
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 9.1e-86 320.5 194 85.1
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.2e-85 320.1 201 82.1
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 1.5e-85 319.7 194 84.0
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 2.0e-85 319.3 194 82.5
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 2.6e-85 318.9 194 80.4
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 2.6e-85 318.9 193 83.9
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 3.4e-85 318.5 194 82.0
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 5.9e-85 317.8 194 82.5
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 5.9e-85 317.8 198 83.3
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 1.0e-84 317.0 194 83.0
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 1.3e-84 316.6 194 82.0
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 1.7e-84 316.2 194 82.5
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 2.2e-84 315.8 196 83.7
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 2.2e-84 315.8 197 82.2
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 2.9e-84 315.5 200 82.0
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 3.8e-84 315.1 197 80.7
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 5.0e-84 314.7 194 83.0
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 5.0e-84 314.7 194 83.0
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 5.0e-84 314.7 194 81.4
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 8.5e-84 313.9 200 81.0
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 8.5e-84 313.9 200 81.0
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 8.5e-84 313.9 201 79.6
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 1.1e-83 313.5 194 81.4
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 1.4e-83 313.2 194 82.0
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 1.4e-83 313.2 194 81.4
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 1.4e-83 313.2 194 80.4
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.9e-83 312.8 199 80.9
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 2.5e-83 312.4 194 80.9
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 4.2e-83 311.6 194 82.5
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 4.2e-83 311.6 194 80.9
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 5.5e-83 311.2 194 78.9
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 5.5e-83 311.2 201 81.6
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 5.5e-83 311.2 203 78.3
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 5.5e-83 311.2 198 81.8
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 7.2e-83 310.8 194 80.4
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 9.4e-83 310.5 196 80.1
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 9.4e-83 310.5 194 80.4
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 9.4e-83 310.5 194 80.4
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 9.4e-83 310.5 194 81.4
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 1.2e-82 310.1 194 79.9
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 1.6e-82 309.7 194 79.9
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 1.6e-82 309.7 194 80.4
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 2.7e-82 308.9 194 80.4
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 4.7e-82 308.1 198 78.3
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 4.7e-82 308.1 192 79.2
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 4.7e-82 308.1 210 76.7
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 6.1e-82 307.8 194 80.9
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 7.9e-82 307.4 194 79.9
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 7.9e-82 307.4 194 79.9
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 7.9e-82 307.4 195 81.0
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 7.9e-82 307.4 194 80.4
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 1.0e-81 307.0 199 78.9
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 1.4e-81 306.6 202 77.2
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 1.8e-81 306.2 196 79.6
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 3.0e-81 305.4 194 79.4
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 3.0e-81 305.4 194 80.9
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 3.9e-81 305.1 196 80.6
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 8.8e-81 303.9 203 76.4
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 8.8e-81 303.9 199 77.9
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 8.8e-81 303.9 217 73.3
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.1e-80 303.5 204 77.9
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 1.5e-80 303.1 193 80.3
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 2.0e-80 302.8 197 78.2
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 2.0e-80 302.8 197 78.2
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 2.0e-80 302.8 197 78.2
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.3e-79 300.1 202 76.7
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 1.7e-79 299.7 197 77.2
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 1.7e-79 299.7 199 76.9
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 2.2e-79 299.3 204 75.5
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 3.7e-79 298.5 206 75.2
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 3.7e-79 298.5 201 75.6
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 6.3e-79 297.7 192 78.6
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 1.4e-78 296.6 196 78.1
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 1.4e-78 296.6 196 78.1
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 1.8e-78 296.2 197 76.6
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 4.1e-78 295.0 197 76.6
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 4.1e-78 295.0 197 76.6
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 4.1e-78 295.0 194 80.4
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 5.3e-78 294.7 194 76.3
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 9.1e-78 293.9 186 82.3
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 1.2e-77 293.5 197 76.1
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 1.2e-77 293.5 198 74.7
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 2.0e-77 292.7 196 77.6
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 2.0e-77 292.7 196 75.0
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 1.0e-76 290.4 194 77.8
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 2.9e-76 288.9 176 84.7
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 3.8e-76 288.5 175 82.3
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 1.1e-75 287.0 194 74.7
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 2.5e-75 285.8 197 76.6
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 4.2e-75 285.0 202 71.8
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 5.5e-75 284.6 196 76.5
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 7.2e-75 284.3 243 63.4
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 1.2e-74 283.5 200 71.5
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 1.6e-74 283.1 200 71.5
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 2.1e-74 282.7 192 72.9
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 6.1e-74 281.2 211 69.7
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 1.0e-73 280.4 182 79.7
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 1.0e-73 280.4 198 74.2
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 1.4e-73 280.0 223 68.6
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 2.3e-73 279.3 203 72.4
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 2.0e-72 276.2 180 79.4
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 6.3e-71 271.2 175 78.3
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 8.2e-71 270.8 201 72.1
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 3.1e-70 268.9 204 70.1
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 4.1e-70 268.5 180 77.2
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 9.1e-70 267.3 194 72.2
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.2e-69 266.9 196 69.9
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 5.9e-69 264.6 189 70.9
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 7.7e-69 264.2 215 66.5
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 2.9e-68 262.3 193 69.4
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 8.5e-68 260.8 233 63.1
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 1.9e-67 259.6 213 67.6
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 9.4e-67 257.3 183 70.5
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 2.1e-66 256.1 187 73.8
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 4.0e-65 251.9 185 68.1
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 2.2e-63 246.1 182 71.4
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 6.3e-63 244.6 180 70.0
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 5.5e-59 231.5 177 68.9
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 1.6e-58 229.9 194 63.4
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 1.6e-58 229.9 197 61.9
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 6.1e-58 228.0 201 62.2
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 1.9e-51 206.5 130 82.3
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 9.5e-51 204.1 153 70.6
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 8.9e-49 197.6 116 85.3
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 1.9e-43 179.9 177 57.6
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 8.0e-42 174.5 94 95.7
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 2.3e-41 172.9 99 89.9
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 7.5e-40 167.9 103 83.5
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 3.2e-38 162.5 188 55.3
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 4.1e-38 162.2 97 81.4
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 1.9e-30 136.7 195 48.7
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.2e-29 134.0 70 95.7
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 2.1e-29 133.3 95 72.6
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 4.6e-29 132.1 100 71.0
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 8.6e-28 127.9 79 77.2
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 1.1e-27 127.5 78 75.6
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 1.1e-25 120.9 190 40.5
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 1.7e-23 113.6 72 81.9
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 1.7e-23 113.6 100 68.0
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 1.6e-21 107.1 192 42.2
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 1.6e-21 107.1 190 38.4
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 2.5e-19 99.8 192 40.6
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 1.2e-16 90.9 73 63.0
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 8.4e-15 84.7 57 70.2
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 4.2e-14 82.4 52 71.2
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 7.1e-14 81.6 51 80.4
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.2e-13 80.9 53 77.4
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 5.1e-12 75.5 166 36.7
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 6.2e-10 68.6 61 60.7
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 6.9e-09 65.1 70 52.9
CSS0000142 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 1.9e-06 57.0 57 59.6


User provided reference genes

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