Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 0.0e+00 1077.4 553 100.0
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.3e-193 680.2 556 67.6
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.3e-193 680.2 556 67.6
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 2.3e-182 642.9 553 64.6
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 7.3e-181 637.9 560 63.2
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 7.6e-170 601.3 535 61.1
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 6.6e-166 588.2 547 61.1
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 1.3e-161 573.9 556 55.8
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 1.1e-160 570.9 555 56.4
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 1.2e-159 567.4 556 56.5
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 2.1e-156 556.6 552 54.5
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 8.7e-150 534.6 556 53.6
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 3.3e-149 532.7 556 54.9
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 8.2e-148 528.1 555 54.8
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.3e-142 510.8 536 51.3
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 1.1e-141 507.7 541 51.8
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 3.7e-140 502.7 551 51.0
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 3.4e-138 496.1 554 49.8
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 4.5e-138 495.7 554 50.2
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 7.7e-138 495.0 558 48.7
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 2.9e-137 493.0 450 57.1
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 1.4e-134 484.2 550 51.1
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 1.8e-134 483.8 527 50.5
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 5.7e-133 478.8 540 49.1
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 7.4e-133 478.4 551 50.1
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 9.7e-133 478.0 545 50.8
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 9.7e-133 478.0 539 51.6
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 1.4e-131 474.2 531 48.4
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.4e-131 474.2 537 51.8
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 2.4e-131 473.4 531 51.4
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.4e-128 464.2 550 48.7
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 1.6e-127 460.7 516 48.8
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 5.1e-126 455.7 484 52.7
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 3.7e-124 449.5 553 47.6
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 2.4e-123 446.8 470 50.6
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 3.1e-123 446.4 542 46.5
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 2.1e-119 433.7 529 47.3
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 4.0e-118 429.5 533 45.6
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 1.5e-117 427.6 530 47.0
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 2.6e-117 426.8 540 44.8
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.1e-115 421.4 541 45.5
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.2e-114 417.9 553 46.7
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 1.6e-114 417.5 550 44.5
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 8.5e-113 411.8 530 45.7
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 4.2e-112 409.5 552 46.0
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 4.2e-112 409.5 527 47.4
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 4.7e-111 406.0 528 45.1
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 1.8e-110 404.1 531 46.5
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 3.0e-110 403.3 539 45.5
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 4.4e-109 399.4 553 43.6
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 1.7e-108 397.5 524 46.2
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 5.4e-107 392.5 540 45.2
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 1.3e-105 387.9 549 42.1
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.7e-105 387.5 496 44.0
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 2.2e-105 387.1 476 45.2
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 1.1e-104 384.8 531 43.9
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 4.0e-102 376.3 560 42.0
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 1.2e-98 364.8 535 42.1
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 7.7e-98 362.1 534 41.4
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.7e-97 360.9 535 41.5
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.3e-97 360.5 551 43.7
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 1.5e-96 357.8 434 49.3
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 9.5e-96 355.1 535 41.3
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 1.2e-95 354.8 534 40.4
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.6e-95 354.4 527 42.1
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 4.0e-94 349.7 540 38.9
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 6.8e-94 349.0 532 39.3
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 4.4e-93 346.3 497 42.1
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 4.1e-91 339.7 492 39.8
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.0e-89 335.1 257 70.0
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 3.0e-89 333.6 547 38.4
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.9e-88 330.9 503 41.2
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 4.3e-88 329.7 545 39.4
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 4.0e-86 323.2 540 38.1
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 8.9e-86 322.0 502 39.2
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 1.3e-84 318.2 529 38.2
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.1e-83 315.1 544 37.1
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 3.2e-83 313.5 510 38.8
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 4.1e-83 313.2 545 38.2
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 4.1e-83 313.2 532 37.2
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 1.0e-81 308.5 522 38.9
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 3.0e-81 307.0 531 38.4
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 8.6e-81 305.4 502 37.1
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 1.5e-80 304.7 488 41.0
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 9.5e-80 302.0 490 37.8
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 2.3e-78 297.4 384 43.8
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 5.2e-78 296.2 386 42.2
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 1.2e-77 295.0 294 56.8
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.2e-77 295.0 384 43.5
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 5.8e-77 292.7 515 37.9
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 1.3e-76 291.6 498 37.3
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 1.3e-76 291.6 547 37.5
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 2.2e-76 290.8 531 38.2
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 4.1e-75 286.6 497 35.4
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 4.1e-75 286.6 522 36.6
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 5.4e-75 286.2 510 38.6
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 5.4e-75 286.2 510 38.6
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 3.5e-74 283.5 536 36.4
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 3.5e-74 283.5 564 35.5
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 6.0e-74 282.7 555 35.7
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.3e-73 281.6 285 51.6
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 2.3e-73 280.8 496 35.9
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 3.0e-73 280.4 496 35.9
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 3.9e-73 280.0 516 36.6
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 3.9e-73 280.0 510 35.5
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 5.1e-73 279.6 543 35.0
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 1.9e-72 277.7 533 34.9
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 2.5e-72 277.3 514 35.4
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 2.1e-71 274.2 516 34.7
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 3.6e-71 273.5 508 34.6
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 8.1e-71 272.3 539 35.1
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.1e-70 271.9 501 34.7
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 4.0e-70 270.0 509 34.2
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 1.2e-69 268.5 529 34.2
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.5e-69 268.1 529 34.2
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 2.0e-69 267.7 516 36.8
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 5.8e-69 266.2 553 33.6
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.1e-67 261.9 271 55.7
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 1.4e-67 261.5 287 48.4
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 3.2e-67 260.4 350 43.7
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 5.4e-67 259.6 524 33.2
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 1.6e-66 258.1 277 49.8
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 2.7e-66 257.3 277 49.8
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 6.6e-65 252.7 532 32.1
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 4.3e-64 250.0 422 37.7
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 7.3e-64 249.2 491 35.0
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 9.6e-64 248.8 249 56.6
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 1.2e-63 248.4 581 33.2
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 3.1e-62 243.8 373 38.1
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 5.2e-62 243.0 455 34.9
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 1.5e-61 241.5 564 32.8
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 7.6e-61 239.2 517 35.6
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 4.9e-60 236.5 504 31.5
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 7.8e-58 229.2 273 49.5
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 5.1e-57 226.5 529 33.8
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 3.3e-56 223.8 398 35.4
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 2.8e-55 220.7 540 33.5
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.8e-54 218.0 529 32.3
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 3.2e-51 207.2 277 42.6
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 9.3e-51 205.7 276 40.2
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 1.6e-50 204.9 553 30.2
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 2.1e-50 204.5 245 45.7
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 2.1e-50 204.5 302 43.7
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 5.1e-49 199.9 547 30.7
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 1.1e-48 198.7 525 30.1
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 1.5e-48 198.4 549 30.1
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 1.9e-48 198.0 551 28.3
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 3.6e-47 193.7 500 29.6
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 4.5e-45 186.8 260 45.8
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 3.8e-44 183.7 248 46.4
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 6.2e-39 166.4 533 28.7
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 6.2e-39 166.4 534 29.0
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 4.0e-38 163.7 532 28.6
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 6.9e-38 162.9 536 29.5
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 9.0e-38 162.5 530 29.6
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 1.2e-34 152.1 243 37.0
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 8.7e-33 146.0 282 32.6
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.1e-32 145.6 255 32.5
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 5.7e-32 143.3 285 35.1
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 1.8e-30 138.3 259 34.4
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 3.1e-30 137.5 272 36.4
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 2.6e-29 134.4 277 36.5
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 5.0e-28 130.2 257 31.5
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 6.5e-28 129.8 167 44.9
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 1.4e-27 128.6 118 55.1
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 3.2e-27 127.5 486 27.8
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 2.1e-26 124.8 167 44.3
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.0e-25 122.5 236 36.0
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 3.9e-25 120.6 209 41.1
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 1.5e-21 108.6 136 47.8
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 4.6e-18 97.1 292 29.5
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 2.0e-16 91.7 152 36.8
Mapoly0075s0033 Marchantia polymorpha HOM05D003538 ORTHO05D004376 2.6e-16 91.3 531 22.6
Lj7A278T10 Lonicera japonica HOM05D003538 ORTHO05D004376 3.7e-15 87.4 141 36.9
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 1.3e-12 79.0 284 28.2
AagrBONN_evm.TU.Sc2ySwM_344.1097 Anthoceros agrestis HOM05D003538 ORTHO05D004376 2.1e-10 71.6 481 25.6
BcaC06g31881 Brassica carinata HOM05D000161 ORTHO05D000111 9.1e-06 56.2 101 34.7


User provided reference genes

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