Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 1.6e-266 922.2 465 100.0
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 1.5e-214 749.6 462 80.7
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 1.0e-212 743.4 462 80.1
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 1.1e-206 723.4 463 78.2
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 2.2e-202 709.1 468 76.7
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 2.8e-202 708.8 463 77.1
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 1.2e-195 686.8 462 74.5
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 2.8e-194 682.2 502 70.7
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 1.0e-191 673.7 464 72.6
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 4.2e-190 668.3 461 73.5
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 2.3e-188 662.5 465 71.2
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 1.7e-186 656.4 461 72.0
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 8.3e-186 654.1 464 70.3
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 1.4e-185 653.3 459 69.5
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 1.8e-185 652.9 462 71.0
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 3.2e-185 652.1 464 71.6
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 1.2e-184 650.2 464 69.2
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 7.8e-184 647.5 464 70.5
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 6.6e-183 644.4 463 69.8
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 1.5e-182 643.3 461 70.5
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 4.3e-182 641.7 463 69.1
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 5.6e-182 641.3 461 69.8
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 1.0e-180 637.1 462 69.7
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 2.3e-180 636.0 460 67.4
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 1.2e-179 633.6 513 64.9
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 4.4e-179 631.7 463 67.2
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 5.0e-175 618.2 464 66.8
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 1.9e-174 616.3 471 67.5
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 2.1e-173 612.8 460 69.3
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 6.2e-173 611.3 464 64.2
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 1.4e-172 610.1 462 67.1
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 4.0e-172 608.6 434 70.5
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 8.9e-172 607.4 453 67.5
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 1.2e-171 607.1 460 66.5
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 2.0e-171 606.3 464 66.8
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 2.0e-171 606.3 464 66.8
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 3.4e-171 605.5 447 68.5
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 9.8e-171 604.0 463 67.8
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 1.3e-170 603.6 460 65.4
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 4.9e-170 601.7 446 67.9
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 6.4e-170 601.3 460 66.5
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 8.3e-170 600.9 463 67.4
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 1.1e-169 600.5 464 66.2
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 2.4e-169 599.4 461 63.6
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 3.2e-169 599.0 468 63.5
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 4.1e-169 598.6 462 64.5
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 1.0e-167 594.0 464 64.0
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 1.3e-167 593.6 465 64.7
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 1.6e-165 586.6 465 63.9
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 6.2e-165 584.7 459 63.0
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 1.1e-164 583.9 458 61.1
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 3.1e-164 582.4 458 63.8
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 8.9e-164 580.9 461 63.3
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 1.5e-163 580.1 466 63.7
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 3.4e-163 578.9 464 62.7
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 5.8e-163 578.2 461 63.6
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 1.7e-162 576.6 463 61.6
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 3.7e-162 575.5 464 61.2
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.4e-161 573.5 461 62.9
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 1.9e-161 573.2 469 64.0
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 2.4e-161 572.8 464 60.8
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 1.7e-159 566.6 467 63.0
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 5.1e-159 565.1 469 63.3
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 5.6e-158 561.6 467 60.6
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 7.3e-158 561.2 454 62.1
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 9.6e-158 560.8 467 60.2
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 1.8e-156 556.6 464 61.6
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 4.0e-156 555.4 464 61.9
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 6.4e-154 548.1 459 59.5
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 8.4e-154 547.7 498 56.4
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 7.1e-153 544.7 466 59.2
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.6e-152 543.5 436 62.6
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 2.1e-152 543.1 465 57.6
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 3.5e-152 542.3 461 57.0
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 4.6e-152 542.0 436 62.4
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 1.7e-151 540.0 424 63.4
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 3.9e-151 538.9 466 57.5
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 6.6e-151 538.1 463 61.1
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 8.7e-151 537.7 457 57.8
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 1.5e-150 537.0 455 57.6
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 2.5e-150 536.2 468 58.3
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 7.3e-150 534.6 466 57.1
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 1.6e-149 533.5 466 58.4
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 2.8e-149 532.7 466 56.7
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 3.6e-149 532.3 467 57.0
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 4.8e-149 531.9 457 56.5
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 1.4e-148 530.4 466 56.7
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 5.3e-148 528.5 455 57.6
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 9.0e-148 527.7 463 59.2
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 2.6e-147 526.2 459 56.0
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 2.6e-147 526.2 455 57.6
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 7.6e-147 524.6 454 56.8
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 9.9e-147 524.2 466 57.1
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 1.1e-145 520.8 459 59.5
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 4.2e-145 518.8 464 56.0
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 1.0e-135 487.6 440 57.3
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 3.3e-134 482.6 490 51.6
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 6.9e-132 474.9 425 56.2
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 4.9e-130 468.8 458 54.8
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 1.1e-129 467.6 465 51.4
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.3e-127 460.7 460 50.9
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 1.3e-127 460.7 422 59.5
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 1.3e-125 454.1 468 51.9
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 3.4e-123 446.0 449 51.0
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 2.4e-116 423.3 295 70.2
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 1.6e-104 384.0 427 45.9
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 4.7e-104 382.5 529 43.3
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 7.5e-94 348.6 364 49.2
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 7.5e-94 348.6 364 49.2
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 2.9e-90 336.7 492 39.2
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 5.0e-90 335.9 278 60.4
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 5.5e-89 332.4 443 41.1
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 2.0e-83 313.9 466 42.1
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 8.8e-79 298.5 327 53.8
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 1.7e-66 257.7 362 44.2
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 6.2e-64 249.2 513 32.7
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 2.0e-62 244.2 497 32.8
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 1.2e-54 218.4 192 60.9
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 9.9e-46 188.7 162 58.0
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 3.8e-45 186.8 477 29.1
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 3.8e-45 186.8 162 57.4
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 3.4e-38 163.7 116 68.1
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 1.7e-37 161.4 129 59.7
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 6.4e-37 159.5 241 41.9
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 2.3e-34 151.0 127 54.3
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 2.3e-34 151.0 127 54.3
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 1.9e-33 147.9 402 29.6
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 3.3e-33 147.1 124 54.0
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 3.6e-32 143.7 105 61.9
MCO15G657 Micromonas commoda HOM05D005294 ORTHO05D006720 1.8e-31 141.4 447 23.7
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 1.7e-29 134.8 440 25.7
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 1.3e-24 118.6 289 28.7
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 1.2e-19 102.1 121 42.1
SGA_v2.0_scaffold194G40752 Striga asiatica HOM05D005294 ORTHO05D006720 1.6e-16 91.7 73 63.0
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 2.8e-16 90.9 172 36.0
Zm00001eb382850 Zea mays HOM05D005294 ORTHO05D006720 6.9e-15 86.3 88 52.3
Zm00001eb383990 Zea mays HOM05D005294 ORTHO05D006720 1.2e-14 85.5 88 52.3
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 5.8e-14 83.2 77 55.8
Cc06_g10970 Coffea canephora HOM05D005294 ORTHO05D038989 2.3e-10 71.2 40 87.5
GSVIVG01038419001 Vitis vinifera HOM05D005294 ORTHO05D008307 3.0e-10 70.9 38 81.6
GSVIVG01027373001 Vitis vinifera HOM05D005294 ORTHO05D006720 1.9e-09 68.2 39 76.9


User provided reference genes

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