Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 7.5e-136 487.6 339 100.0
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 2.9e-95 352.8 331 74.9
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 3.8e-95 352.4 331 80.4
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 2.1e-93 346.7 336 75.6
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 3.5e-93 345.9 338 79.0
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 3.0e-92 342.8 318 76.4
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 5.1e-92 342.0 317 83.6
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 1.1e-91 340.9 319 74.6
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 1.1e-91 340.9 337 70.9
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 1.1e-91 340.9 330 78.2
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 1.1e-91 340.9 333 78.7
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 1.9e-91 340.1 327 66.1
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 4.3e-91 339.0 311 82.6
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 9.6e-91 337.8 319 71.8
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 9.6e-91 337.8 323 80.5
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 1.3e-90 337.4 318 73.9
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.6e-90 337.0 339 77.0
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 1.6e-90 337.0 333 79.3
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 3.6e-90 335.9 326 75.8
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 4.8e-90 335.5 337 77.2
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 6.2e-90 335.1 318 66.7
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.1e-89 334.3 340 77.1
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 1.1e-89 334.3 319 66.5
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 1.1e-89 334.3 318 75.2
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 2.4e-89 333.2 319 79.6
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 3.1e-89 332.8 335 69.6
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 4.0e-89 332.4 334 78.1
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 6.9e-89 331.6 342 69.9
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 9.0e-89 331.3 324 69.8
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 1.2e-88 330.9 342 69.6
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 1.2e-88 330.9 342 69.6
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 2.0e-88 330.1 319 73.4
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 3.4e-88 329.3 333 71.8
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 7.6e-88 328.2 339 69.6
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 7.6e-88 328.2 337 76.9
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.7e-87 327.0 339 74.6
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 3.8e-87 325.9 322 75.5
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 4.9e-87 325.5 333 71.5
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 6.4e-87 325.1 314 70.7
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 1.1e-86 324.3 331 71.9
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 1.4e-86 323.9 327 75.5
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.4e-86 323.2 318 77.4
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.4e-86 323.2 318 77.4
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 2.4e-86 323.2 318 78.6
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 4.2e-86 322.4 316 72.5
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 7.1e-86 321.6 318 70.1
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 9.3e-86 321.2 303 76.6
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 9.3e-86 321.2 339 74.3
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 1.2e-85 320.9 322 76.1
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 1.6e-85 320.5 322 76.4
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 1.6e-85 320.5 322 68.0
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 1.6e-85 320.5 338 71.0
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 2.1e-85 320.1 320 71.6
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 2.7e-85 319.7 322 72.4
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 3.5e-85 319.3 352 59.7
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 3.5e-85 319.3 338 74.0
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 4.6e-85 318.9 320 71.6
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 7.9e-85 318.2 337 71.8
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 7.9e-85 318.2 339 73.7
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 7.9e-85 318.2 338 66.6
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 1.0e-84 317.8 320 71.6
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 2.3e-84 316.6 328 70.7
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 3.9e-84 315.8 338 71.6
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 6.7e-84 315.1 311 73.0
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 1.5e-83 313.9 323 75.9
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 1.5e-83 313.9 333 74.8
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 4.3e-83 312.4 324 67.9
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 9.6e-83 311.2 318 65.7
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 1.3e-82 310.8 320 70.6
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 1.3e-82 310.8 320 70.6
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 1.6e-82 310.5 332 73.8
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 2.1e-82 310.1 318 68.9
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 2.8e-82 309.7 328 69.8
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 8.1e-82 308.1 318 75.2
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 4.0e-81 305.8 314 71.3
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 6.9e-81 305.1 316 74.7
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 6.9e-81 305.1 343 66.5
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 9.0e-81 304.7 324 75.6
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 2.6e-80 303.1 316 74.1
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 3.4e-80 302.8 339 71.7
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 7.6e-80 301.6 338 72.8
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 1.7e-79 300.4 316 73.1
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 8.4e-79 298.1 327 67.9
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 1.4e-78 297.4 322 68.0
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 1.9e-78 297.0 328 71.0
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 2.5e-78 296.6 312 77.9
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 7.1e-78 295.0 327 68.5
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 7.1e-78 295.0 313 64.2
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 7.1e-78 295.0 313 64.2
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 9.3e-78 294.7 310 75.8
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 6.0e-77 292.0 338 67.8
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 7.9e-77 291.6 313 77.0
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 1.0e-76 291.2 316 68.0
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 1.3e-76 290.8 336 69.9
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 1.8e-76 290.4 312 75.0
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 3.0e-76 289.7 318 73.6
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 3.0e-76 289.7 310 64.2
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 2.5e-75 286.6 313 76.4
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 2.1e-74 283.5 321 74.5
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 2.8e-74 283.1 312 76.0
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 4.8e-74 282.3 324 71.3
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 2.4e-73 280.0 293 73.0
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 1.2e-72 277.7 318 68.2
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 1.5e-72 277.3 313 74.8
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 1.0e-71 274.6 294 69.7
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 4.9e-71 272.3 259 69.1
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.5e-70 270.0 339 61.1
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 7.1e-70 268.5 235 69.8
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 7.1e-70 268.5 332 67.8
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 2.1e-69 266.9 321 60.4
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 1.6e-66 257.3 223 65.0
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 1.8e-65 253.8 369 52.0
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 1.1e-62 244.6 321 58.3
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 5.1e-60 235.7 224 74.6
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 5.1e-60 235.7 222 63.5
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 8.8e-60 235.0 314 58.6
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 1.1e-59 234.6 157 79.0
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 1.3e-58 231.1 297 62.6
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 1.8e-57 227.3 324 61.4
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 5.3e-57 225.7 180 62.8
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 6.9e-57 225.3 180 62.8
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 5.9e-56 222.2 319 61.1
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 2.9e-55 219.9 294 66.0
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 2.5e-54 216.9 181 68.5
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 5.5e-54 215.7 182 67.0
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 1.4e-52 211.1 308 54.9
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 1.7e-50 204.1 309 62.8
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 1.2e-48 198.0 180 61.1
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 2.2e-47 193.7 185 63.2
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 2.9e-47 193.4 185 68.1
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 1.1e-46 191.4 186 72.0
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 1.9e-46 190.7 308 52.6
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 9.4e-46 188.3 212 84.9
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 1.4e-44 184.5 150 62.7
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 6.7e-44 182.2 140 66.4
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 1.5e-43 181.0 233 51.5
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 2.0e-43 180.6 308 48.1
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 3.3e-43 179.9 145 66.2
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 3.7e-42 176.4 162 59.3
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 7.0e-41 172.2 318 53.8
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 2.0e-40 170.6 121 72.7
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 1.7e-39 167.5 152 65.8
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 1.5e-38 164.5 119 68.9
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 2.1e-37 160.6 158 58.2
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 2.8e-34 150.2 207 72.5
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 7.0e-33 145.6 155 56.1
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 3.8e-31 139.8 159 56.0
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 1.9e-30 137.5 153 63.4
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 3.6e-29 133.3 168 51.8
Gohir.D04G104800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 3.7e-26 123.2 183 68.9
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.5e-22 111.3 96 64.6
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.5e-22 109.4 96 63.5
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.5e-22 109.4 96 63.5
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 1.5e-19 101.3 145 43.4
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.6e-19 100.5 89 62.9
COL.COLO4_34775 Corchorus olitorius HOM05D004175 ORTHO05D004664 2.8e-18 97.1 96 55.2
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.9e-16 89.4 89 58.4
BolC9t58072H Brassica oleracea HOM05D004175 ORTHO05D004664 2.5e-14 84.0 96 47.9
PRCOL_00004941 Prasinoderma coloniale HOM05D004175 ORTHO05D004664 3.3e-14 83.6 358 28.5
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 7.3e-14 82.4 95 52.6
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 9.5e-14 82.0 95 52.6
C09p52070 Brassica napus HOM05D004175 ORTHO05D004664 2.3e-12 77.4 102 45.1
FAN20G2587 Fragaria x ananassa HOM05D000366 ORTHO05D000437 6.4e-10 69.3 53 62.3
HPP92_002875 Vanilla planifolia HOM05D004175 ORTHO05D004664 1.1e-09 68.6 96 45.8
MBI04_g44954_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 2.4e-09 67.4 163 51.5
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 3.2e-09 67.0 106 42.5
FAN19G2726 Fragaria x ananassa HOM05D004175 ORTHO05D004664 9.2e-09 65.5 62 58.1
C03p68800 Brassica napus HOM05D004175 ORTHO05D004664 2.0e-08 64.3 55 54.5


User provided reference genes

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