Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv36653 Davidia involucrata HOM05D007491 ORTHO05D009489 1.3e-55 219.5 117 100.0
Dinv41621 Davidia involucrata HOM05D007491 ORTHO05D009489 2.4e-25 119.0 93 81.7
CiPaw.03G229400 Carya illinoinensis HOM05D007491 ORTHO05D009489 7.5e-19 97.4 93 66.7
Prupe.7G233600 Prunus persica HOM05D007491 ORTHO05D009489 8.3e-18 94.0 93 65.6
TAR383G0584 Trochodendron aralioides HOM05D007491 ORTHO05D009489 4.1e-17 91.7 93 65.6
CSS0038485 Camellia sinensis var. sinensis HOM05D007491 ORTHO05D009489 9.2e-17 90.5 95 65.3
PGR102G1855 Punica granatum HOM05D007491 ORTHO05D009489 1.6e-16 89.7 90 64.4
Rhsim01G0100500 Rhododendron simsii HOM05D007491 ORTHO05D009489 1.3e-15 86.7 94 66.0
GSVIVG01035656001 Vitis vinifera HOM05D007491 ORTHO05D009489 1.3e-15 86.7 93 64.5
Cfa003238 Carpinus fangiana HOM05D007491 ORTHO05D009489 2.3e-15 85.9 100 58.0
Hma1.2p1_1463F.1_g285180 Hydrangea macrophylla HOM05D007491 ORTHO05D009489 6.6e-15 84.3 88 64.8
Potri.018G082800 Populus trichocarpa HOM05D007491 ORTHO05D009489 1.5e-14 83.2 96 55.2
Haze_25768 Corylus avellana HOM05D007491 ORTHO05D009489 1.9e-14 82.8 98 57.1
Eucgr.C03814 Eucalyptus grandis HOM05D007491 ORTHO05D009489 4.3e-14 81.6 92 58.7
THA.LOC104822629 Tarenaya hassleriana HOM05D007491 ORTHO05D009489 4.3e-14 81.6 93 58.1
Nn3g18087 Nelumbo nucifera HOM05D007491 ORTHO05D009489 9.5e-14 80.5 114 53.5
MD15G1182000 Malus domestica HOM05D007491 ORTHO05D009489 1.6e-13 79.7 90 60.0
Nn2g11682 Nelumbo nucifera HOM05D007491 ORTHO05D009489 2.1e-13 79.3 93 59.1
RcHm_v2.0_Chr2g0090011 Rosa chinensis HOM05D007491 ORTHO05D009489 2.8e-13 79.0 90 60.0
CANSAT78G0421 Cannabis sativa HOM05D007491 ORTHO05D009489 4.7e-13 78.2 83 61.4
Oeu013426.2 Olea europaea HOM05D007491 ORTHO05D009489 6.2e-13 77.8 91 58.2
Cc06_g09900 Coffea canephora HOM05D007491 ORTHO05D009489 8.1e-13 77.4 93 61.3
MD02G1043400 Malus domestica HOM05D007491 ORTHO05D009489 1.1e-12 77.0 90 56.7
COL.COLO4_18682 Corchorus olitorius HOM05D007491 ORTHO05D009489 1.8e-12 76.3 96 57.3
Sabra18G0070600 Salix brachista HOM05D007491 ORTHO05D009489 2.3e-12 75.9 96 52.1
Thecc.09G107500 Theobroma cacao HOM05D007491 ORTHO05D009489 4.0e-12 75.1 90 60.0
TWI63G0394 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 5.2e-12 74.7 96 53.1
CsaV3_2G002190 Cucumis sativus L. HOM05D007491 ORTHO05D009489 6.8e-12 74.3 94 56.4
Thecc.09G041400 Theobroma cacao HOM05D007491 ORTHO05D009489 8.9e-12 73.9 95 56.8
ClCG11G002390 Citrullus lanatus HOM05D007491 ORTHO05D009489 2.0e-11 72.8 94 55.3
Duzib150G1582 Durio zibethinus HOM05D007491 ORTHO05D009489 7.5e-11 70.9 95 54.7
Sed0025893 Sechium edule HOM05D007491 ORTHO05D009489 7.5e-11 70.9 97 51.5
VMungo0251G1641 Vigna mungo HOM05D007491 ORTHO05D009489 7.5e-11 70.9 88 54.5
Phvul.002G312200 Phaseolus vulgaris HOM05D007491 ORTHO05D009489 9.9e-11 70.5 89 52.8
Gohir.D06G094200 Gossypium hirsutum HOM05D007491 ORTHO05D009489 1.3e-10 70.1 100 53.0
Gorai.010G108700 Gossypium raimondii HOM05D007491 ORTHO05D009489 1.3e-10 70.1 100 53.0
MELO3C004564.2 Cucumis melo HOM05D007491 ORTHO05D009489 1.7e-10 69.7 93 54.8
TWI34G1809 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 1.7e-10 69.7 96 54.2
Duzib187G0523 Durio zibethinus HOM05D007491 ORTHO05D009489 2.2e-10 69.3 95 53.7
PSO782G0237 Papaver somniferum HOM05D007491 ORTHO05D009489 2.2e-10 69.3 94 58.5
Peaxi162Scf00231g00326 Petunia axillaris HOM05D007491 ORTHO05D009489 2.2e-10 69.3 92 51.1
Glyma.08G037500 Glycine max HOM05D007491 ORTHO05D009489 3.7e-10 68.6 89 55.1
CARHR088390 Cardamine hirsuta HOM05D007491 ORTHO05D009489 6.4e-10 67.8 90 53.3
CARHR044840 Cardamine hirsuta HOM05D007491 ORTHO05D009489 1.1e-09 67.0 88 56.8
Thhalv10021835m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 1.1e-09 67.0 89 52.8
AT3G13674 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 1.4e-09 66.6 92 52.2
Carub.0003s1318 Capsella rubella HOM05D007491 ORTHO05D009489 1.4e-09 66.6 91 53.8
Ca_17329_v3 Cicer arietinum L. HOM05D007491 ORTHO05D009489 1.4e-09 66.6 90 55.6
FAN23G1386 Fragaria x ananassa HOM05D007491 ORTHO05D009489 1.9e-09 66.2 90 53.3
Sed0000101 Sechium edule HOM05D007491 ORTHO05D009489 1.9e-09 66.2 94 53.2
AT1G55205 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 3.2e-09 65.5 92 52.2
FvH4_1g04361 Fragaria vesca HOM05D007491 ORTHO05D009489 3.2e-09 65.5 93 54.8
FAN19G0791 Fragaria x ananassa HOM05D007491 ORTHO05D009489 3.2e-09 65.5 93 54.8
Lalb_Chr16g0388121 Lupinus albus HOM05D007491 ORTHO05D009489 4.1e-09 65.1 87 54.0
AL1G63250 Arabidopsis lyrata HOM05D007491 ORTHO05D009489 5.4e-09 64.7 92 52.2
Gohir.A07G005300 Gossypium hirsutum HOM05D007491 ORTHO05D009489 5.4e-09 64.7 90 52.2
Ciclev10010011m.g Citrus clementina HOM05D007491 ORTHO05D009489 7.1e-09 64.3 95 50.5
Gohir.A06G094700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 7.1e-09 64.3 106 48.1
A06p00340 Brassica napus HOM05D007491 ORTHO05D009489 9.2e-09 63.9 105 49.5
BraA06t23249Z Brassica rapa HOM05D007491 ORTHO05D009489 9.2e-09 63.9 105 49.5
ECA234G1405 Erigeron canadensis HOM05D007491 ORTHO05D009489 9.2e-09 63.9 92 48.9
PSO566G0269 Papaver somniferum HOM05D007491 ORTHO05D009489 1.2e-08 63.5 94 55.3
Carub.0001s4372 Capsella rubella HOM05D007491 ORTHO05D009489 2.1e-08 62.8 92 50.0
HanXRQChr12g0355021 Helianthus annuus HOM05D007491 ORTHO05D009489 2.1e-08 62.8 88 54.5
FAN26G2745 Fragaria x ananassa HOM05D001691 ORTHO05D001704 2.7e-08 62.4 97 51.5
Manes.03G022800 Manihot esculenta HOM05D007491 ORTHO05D009489 2.7e-08 62.4 89 57.3
Thhalv10011893m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 3.5e-08 62.0 90 52.2
Ah.16g106040 Amaranthus hybridus HOM05D007491 ORTHO05D009489 4.6e-08 61.6 91 48.4
Gohir.D07G006700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 4.6e-08 61.6 86 52.3
HanXRQChr10g0318621 Helianthus annuus HOM05D007491 ORTHO05D009489 4.6e-08 61.6 83 50.6
Lalb_Chr05g0222981 Lupinus albus HOM05D007491 ORTHO05D009489 6.0e-08 61.2 85 49.4
Sp1g40890 Schrenkiella parvula HOM05D007491 ORTHO05D009489 7.8e-08 60.8 91 49.5
A08p00850 Brassica napus HOM05D007491 ORTHO05D009489 1.0e-07 60.5 123 40.7
Manes.16G071301 Manihot esculenta HOM05D007491 ORTHO05D009489 1.0e-07 60.5 94 50.0
Lsat_1_v5_gn_5_103040 Lactuca sativa HOM05D007491 ORTHO05D009489 1.3e-07 60.1 96 50.0
MBI01_g30748_MAGBIO Magnolia biondii HOM05D007491 ORTHO05D009489 1.3e-07 60.1 91 51.6
TWI32G0642 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 1.3e-07 60.1 96 47.9
Medtr8g103300 Medicago truncatula HOM05D007491 ORTHO05D009489 1.7e-07 59.7 89 49.4
C06p10160 Brassica napus HOM05D007491 ORTHO05D009489 2.3e-07 59.3 93 51.6
Ciclev10010763m.g Citrus clementina HOM05D007491 ORTHO05D009489 3.9e-07 58.5 53 66.0
Glyma.05G230000 Glycine max HOM05D007491 ORTHO05D009489 3.9e-07 58.5 82 51.2
BolC3t21548H Brassica oleracea HOM05D007491 ORTHO05D009489 5.1e-07 58.2 122 41.8
CDE05G2495 Ceratophyllum demersum HOM05D001777 ORTHO05D001809 6.6e-07 57.8 88 50.0
BolC6t36089H Brassica oleracea HOM05D000490 ORTHO05D000785 1.1e-06 57.0 84 51.2
CDE05G0808 Ceratophyllum demersum HOM05D007491 ORTHO05D009489 1.1e-06 57.0 90 52.2
Lj4g0004733 Lotus japonicus HOM05D007491 ORTHO05D009489 1.9e-06 56.2 55 58.2
Psat7g015280 Pisum sativum HOM05D007491 ORTHO05D009489 1.9e-06 56.2 84 47.6
BcaC01g01475 Brassica carinata HOM05D007491 ORTHO05D009489 2.5e-06 55.8 94 50.0
C03p92400 Brassica napus HOM05D007491 ORTHO05D009489 2.5e-06 55.8 94 50.0
BraA08t32143Z Brassica rapa HOM05D007491 ORTHO05D009489 2.5e-06 55.8 94 47.9
Cc02_g17570 Coffea canephora HOM05D006766 ORTHO05D008534 2.5e-06 55.8 46 58.7
Cpa.g.sc62.150 Carica papaya HOM05D006766 ORTHO05D008534 3.3e-06 55.5 75 45.3
FAN27G0567 Fragaria x ananassa HOM05D006766 ORTHO05D008534 4.3e-06 55.1 88 40.9
TPR.G23496 Trifolium pratense HOM05D007491 ORTHO05D009489 5.6e-06 54.7 90 46.7
EL10Ac2g04054 Beta vulgaris HOM05D007491 ORTHO05D009489 7.3e-06 54.3 91 46.2
BcaB04g16984 Brassica carinata HOM05D007491 ORTHO05D009489 7.3e-06 54.3 91 49.5
Lsat_1_v5_gn_5_33441 Lactuca sativa HOM05D007491 ORTHO05D009489 7.3e-06 54.3 85 48.2


User provided reference genes

Program Settings