Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 8.6e-53 209.9 97 100.0
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 3.3e-12 75.1 36 94.4
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 3.3e-12 75.1 36 94.4
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 5.7e-12 74.3 36 91.7
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 5.7e-12 74.3 36 91.7
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 5.7e-12 74.3 36 91.7
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 5.7e-12 74.3 36 91.7
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 5.7e-12 74.3 36 91.7
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 5.7e-12 74.3 36 91.7
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 7.4e-12 73.9 36 91.7
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 9.7e-12 73.6 36 88.9
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 9.7e-12 73.6 36 88.9
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 1.3e-11 73.2 36 86.1
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.3e-11 73.2 37 86.5
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 2.2e-11 72.4 36 86.1
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 2.8e-11 72.0 36 86.1
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 2.8e-11 72.0 36 88.9
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 3.7e-11 71.6 36 88.9
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 6.3e-11 70.9 36 88.9
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 6.3e-11 70.9 36 88.9
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.4e-10 69.7 36 83.3
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 1.8e-10 69.3 36 86.1
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.8e-10 69.3 36 86.1
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.8e-10 69.3 36 83.3
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 1.8e-10 69.3 36 86.1
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 1.8e-10 69.3 36 80.6
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 2.4e-10 68.9 39 76.9
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 2.4e-10 68.9 36 83.3
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 2.4e-10 68.9 36 83.3
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 2.4e-10 68.9 36 80.6
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 3.1e-10 68.6 39 74.4
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 4.1e-10 68.2 36 80.6
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 4.1e-10 68.2 36 80.6
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 4.1e-10 68.2 36 80.6
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 4.1e-10 68.2 36 83.3
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 4.1e-10 68.2 36 80.6
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 4.1e-10 68.2 36 80.6
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 4.1e-10 68.2 36 83.3
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 5.3e-10 67.8 36 80.6
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 5.3e-10 67.8 36 80.6
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 5.3e-10 67.8 36 80.6
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 5.3e-10 67.8 36 80.6
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 5.3e-10 67.8 36 80.6
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 5.3e-10 67.8 36 80.6
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 5.3e-10 67.8 36 80.6
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 6.9e-10 67.4 36 77.8
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 6.9e-10 67.4 36 80.6
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 6.9e-10 67.4 36 83.3
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 6.9e-10 67.4 36 80.6
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 9.0e-10 67.0 36 77.8
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 9.0e-10 67.0 36 80.6
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 9.0e-10 67.0 36 80.6
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 9.0e-10 67.0 36 80.6
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 9.0e-10 67.0 36 77.8
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 1.2e-09 66.6 36 80.6
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 1.2e-09 66.6 36 77.8
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 1.2e-09 66.6 36 80.6
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 1.2e-09 66.6 36 77.8
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.2e-09 66.6 36 77.8
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 1.5e-09 66.2 36 77.8
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 1.5e-09 66.2 36 77.8
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 1.5e-09 66.2 36 75.0
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.5e-09 66.2 36 80.6
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 1.5e-09 66.2 31 96.8
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 1.5e-09 66.2 36 80.6
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.0e-09 65.9 36 80.6
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 2.0e-09 65.9 36 75.0
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 2.0e-09 65.9 36 75.0
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 2.0e-09 65.9 36 75.0
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 2.6e-09 65.5 36 72.2
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 2.6e-09 65.5 36 75.0
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 2.6e-09 65.5 36 77.8
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 2.6e-09 65.5 33 84.8
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 2.6e-09 65.5 36 77.8
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 3.4e-09 65.1 36 75.0
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 3.4e-09 65.1 36 75.0
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 3.4e-09 65.1 33 87.9
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 4.5e-09 64.7 35 80.0
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 5.9e-09 64.3 36 75.0
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 5.9e-09 64.3 34 76.5
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 7.6e-09 63.9 36 69.4
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 7.6e-09 63.9 36 69.4
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 7.6e-09 63.9 36 69.4
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 7.6e-09 63.9 36 69.4
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 7.6e-09 63.9 36 69.4
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 1.3e-08 63.2 33 84.8
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 1.7e-08 62.8 36 72.2
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 1.7e-08 62.8 36 72.2
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 1.7e-08 62.8 33 81.8
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 2.2e-08 62.4 36 69.4
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 2.2e-08 62.4 36 72.2
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 2.2e-08 62.4 36 72.2
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.9e-08 62.0 36 72.2
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.9e-08 62.0 36 72.2
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 2.9e-08 62.0 37 78.4
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 2.9e-08 62.0 33 84.8
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 3.8e-08 61.6 33 81.8
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 3.8e-08 61.6 36 72.2
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 3.8e-08 61.6 33 78.8
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 5.0e-08 61.2 36 75.0
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 5.0e-08 61.2 33 78.8
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 5.0e-08 61.2 36 75.0
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 6.5e-08 60.8 33 78.8
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 6.5e-08 60.8 33 78.8
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 6.5e-08 60.8 33 78.8
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 6.5e-08 60.8 37 73.0
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 6.5e-08 60.8 36 69.4
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 8.5e-08 60.5 33 78.8
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 8.5e-08 60.5 32 81.2
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 8.5e-08 60.5 35 74.3
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 8.5e-08 60.5 35 77.1
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 1.4e-07 59.7 36 77.8
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 2.5e-07 58.9 33 78.8
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 2.5e-07 58.9 34 70.6
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 2.5e-07 58.9 33 75.8
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 2.5e-07 58.9 33 78.8
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 2.5e-07 58.9 33 72.7
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 3.2e-07 58.5 36 66.7
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 4.2e-07 58.2 34 76.5
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 4.2e-07 58.2 34 73.5
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 4.2e-07 58.2 34 73.5
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 4.2e-07 58.2 34 76.5
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 4.2e-07 58.2 33 75.8
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 5.5e-07 57.8 33 72.7
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 5.5e-07 57.8 32 78.1
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 5.5e-07 57.8 34 73.5
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 7.2e-07 57.4 33 72.7
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 7.2e-07 57.4 33 72.7
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 9.3e-07 57.0 32 78.1
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 9.3e-07 57.0 32 78.1
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 9.3e-07 57.0 33 75.8
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 1.2e-06 56.6 34 73.5
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 1.2e-06 56.6 34 73.5
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.6e-06 56.2 32 78.1
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 2.7e-06 55.5 34 67.6
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 6.1e-06 54.3 34 70.6
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 6.1e-06 54.3 34 70.6
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 6.1e-06 54.3 33 72.7
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 6.1e-06 54.3 33 69.7
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 6.1e-06 54.3 34 64.7


User provided reference genes

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