Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv36547 Davidia involucrata HOM05D004394 ORTHO05D005208 1.8e-72 275.8 133 100.0
Prupe.1G517100 Prunus persica HOM05D004394 ORTHO05D005208 6.1e-57 224.2 121 85.1
Oeu046302.1 Olea europaea HOM05D004394 ORTHO05D005208 1.8e-56 222.6 121 86.8
MBI05_g37052_MAGBIO Magnolia biondii HOM05D004394 ORTHO05D005208 1.1e-55 219.9 121 85.1
ClCG08G011100 Citrullus lanatus HOM05D004394 ORTHO05D005208 1.5e-55 219.5 121 87.6
Nn2g12152 Nelumbo nucifera HOM05D004394 ORTHO05D005208 3.3e-55 218.4 121 84.3
SalBow7G3516 Salvia bowleyana HOM05D004394 ORTHO05D005208 5.7e-55 217.6 121 83.5
GSVIVG01032524001 Vitis vinifera HOM05D004394 ORTHO05D005208 5.7e-55 217.6 121 85.1
Ciclev10003351m.g Citrus clementina HOM05D004394 ORTHO05D005208 7.4e-55 217.2 122 84.4
Cc10_g07190 Coffea canephora HOM05D004394 ORTHO05D005208 7.4e-55 217.2 121 85.1
MD08G1182900 Malus domestica HOM05D004394 ORTHO05D005208 7.4e-55 217.2 121 83.5
Nn5g30107 Nelumbo nucifera HOM05D004394 ORTHO05D005208 7.4e-55 217.2 132 78.8
MELO3C011026.2 Cucumis melo HOM05D004394 ORTHO05D005208 9.7e-55 216.9 121 86.8
MSTRG.25920 Avicennia marina HOM05D004394 ORTHO05D005208 1.7e-54 216.1 121 82.6
FAN08G2022 Fragaria x ananassa HOM05D004394 ORTHO05D005208 1.7e-54 216.1 121 83.5
QL12p036785 Quercus lobata HOM05D004394 ORTHO05D005208 2.2e-54 215.7 121 82.6
SalBow7G2639 Salvia bowleyana HOM05D004394 ORTHO05D005208 2.2e-54 215.7 121 82.6
SGA_v2.0_scaffold24G10492 Striga asiatica HOM05D004394 ORTHO05D005208 2.2e-54 215.7 121 81.0
CsaV3_2G029680 Cucumis sativus L. HOM05D004394 ORTHO05D005208 2.8e-54 215.3 121 86.0
Oeu012929.1 Olea europaea HOM05D004394 ORTHO05D005208 4.8e-54 214.5 121 83.5
TAR376G0181 Trochodendron aralioides HOM05D004394 ORTHO05D005208 4.8e-54 214.5 121 81.8
CiPaw.08G045200 Carya illinoinensis HOM05D004394 ORTHO05D005208 6.3e-54 214.2 121 83.5
FAN13G1242 Fragaria x ananassa HOM05D004394 ORTHO05D005208 8.2e-54 213.8 121 82.6
FvH4_5g37330 Fragaria vesca HOM05D004394 ORTHO05D005208 1.4e-53 213.0 121 82.6
FAN18G2812 Fragaria x ananassa HOM05D004394 ORTHO05D005208 1.4e-53 213.0 121 82.6
Manes.08G094000 Manihot esculenta HOM05D004394 ORTHO05D005208 1.4e-53 213.0 121 82.6
Actinidia30773 Actinidia chinensis HOM05D004394 ORTHO05D005208 1.8e-53 212.6 121 81.0
Migut.C01173 Erythranthe guttata HOM05D004394 ORTHO05D005208 1.8e-53 212.6 121 81.8
Atru.chr13.1186 Acer truncatum HOM05D004394 ORTHO05D005208 5.3e-53 211.1 122 82.0
Actinidia10324 Actinidia chinensis HOM05D004394 ORTHO05D005208 9.1e-53 210.3 121 80.2
CSS0017732 Camellia sinensis var. sinensis HOM05D004394 ORTHO05D005208 9.1e-53 210.3 121 81.0
Sabra02G0076100 Salix brachista HOM05D004394 ORTHO05D005208 9.1e-53 210.3 121 79.3
TAR628G0041 Trochodendron aralioides HOM05D004394 ORTHO05D005208 9.1e-53 210.3 121 79.3
Aqoxy6G00782 Aquilegia oxysepala HOM05D004394 ORTHO05D005208 1.2e-52 209.9 121 81.8
Cfa013636 Carpinus fangiana HOM05D004394 ORTHO05D005208 1.2e-52 209.9 121 81.0
QL03p027611 Quercus lobata HOM05D004394 ORTHO05D005208 1.2e-52 209.9 122 81.1
Psat2g179880 Pisum sativum HOM05D004394 ORTHO05D005208 1.5e-52 209.5 121 81.8
Haze_22268 Corylus avellana HOM05D004394 ORTHO05D005208 2.0e-52 209.1 121 80.2
Potri.002G096600 Populus trichocarpa HOM05D004394 ORTHO05D005208 2.0e-52 209.1 121 78.5
Atru.chr5.2725 Acer truncatum HOM05D004394 ORTHO05D005208 2.6e-52 208.8 122 80.3
PGSC0003DMG400006413 Solanum tuberosum HOM05D004394 ORTHO05D005208 2.6e-52 208.8 121 81.0
Sed0012623 Sechium edule HOM05D004394 ORTHO05D005208 4.5e-52 208.0 121 81.0
Sopen04g029330 Solanum pennellii HOM05D004394 ORTHO05D005208 4.5e-52 208.0 121 80.2
TPR.G17517 Trifolium pratense HOM05D004394 ORTHO05D005208 4.5e-52 208.0 121 81.8
Peaxi162Scf00041g00179 Petunia axillaris HOM05D004394 ORTHO05D005208 5.9e-52 207.6 121 79.3
RcHm_v2.0_Chr7g0238971 Rosa chinensis HOM05D004394 ORTHO05D005208 5.9e-52 207.6 121 82.6
CANSAT80G0901 Cannabis sativa HOM05D004394 ORTHO05D005208 7.7e-52 207.2 121 80.2
AUR62036356 Chenopodium quinoa HOM05D004394 ORTHO05D005208 1.0e-51 206.8 121 77.7
Lsat_1_v5_gn_2_108521 Lactuca sativa HOM05D004394 ORTHO05D005208 1.0e-51 206.8 122 81.1
Nitab4.5_0000232g0200 Nicotiana tabacum HOM05D004394 ORTHO05D005208 1.0e-51 206.8 121 80.2
Thecc.08G106700 Theobroma cacao HOM05D004394 ORTHO05D005208 1.0e-51 206.8 123 80.5
Medtr2g028730 Medicago truncatula HOM05D004394 ORTHO05D005208 1.7e-51 206.1 121 81.0
Psat1g170200 Pisum sativum HOM05D004394 ORTHO05D005208 1.7e-51 206.1 121 80.2
unitig_899.g14554 Utricularia gibba HOM05D000298 ORTHO05D000553 1.7e-51 206.1 121 76.9
Ca_08121_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 2.2e-51 205.7 121 80.2
EL10Ac5g11858 Beta vulgaris HOM05D004394 ORTHO05D005208 3.8e-51 204.9 121 76.9
Ca_20267_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 3.8e-51 204.9 121 79.3
Eucgr.D01128 Eucalyptus grandis HOM05D004394 ORTHO05D005208 3.8e-51 204.9 121 81.0
Gohir.D06G036200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 3.8e-51 204.9 123 80.5
Gorai.010G040200 Gossypium raimondii HOM05D004394 ORTHO05D005208 3.8e-51 204.9 123 80.5
TPR.G10620 Trifolium pratense HOM05D004394 ORTHO05D005208 3.8e-51 204.9 121 80.2
CAN.G101.27 Capsicum annuum HOM05D004394 ORTHO05D005208 5.0e-51 204.5 121 78.5
VMungo0720G0524 Vigna mungo HOM05D004394 ORTHO05D005208 5.0e-51 204.5 123 77.2
AUR62030717 Chenopodium quinoa HOM05D004394 ORTHO05D005208 6.5e-51 204.1 121 76.9
Duzib041G0085 Durio zibethinus HOM05D004394 ORTHO05D005208 6.5e-51 204.1 123 79.7
Glyma.20G173300 Glycine max HOM05D004394 ORTHO05D005208 6.5e-51 204.1 121 78.5
Ah.12g059310 Amaranthus hybridus HOM05D004394 ORTHO05D005208 8.5e-51 203.8 121 76.9
Duzib093G0332 Durio zibethinus HOM05D004394 ORTHO05D005208 8.5e-51 203.8 123 79.7
Phvul.007G087400 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 1.1e-50 203.4 121 77.7
Hma1.2p1_0575F.1_g181580 Hydrangea macrophylla HOM05D004394 ORTHO05D005208 1.4e-50 203.0 114 83.3
Potri.005G165000 Populus trichocarpa HOM05D004394 ORTHO05D005208 1.4e-50 203.0 121 76.0
Duzib093G1861 Durio zibethinus HOM05D004394 ORTHO05D005208 1.9e-50 202.6 123 78.9
Gohir.A06G035600 Gossypium hirsutum HOM05D004394 ORTHO05D005208 1.9e-50 202.6 123 79.7
CANSAT80G2869 Cannabis sativa HOM05D004394 ORTHO05D005208 2.5e-50 202.2 121 76.9
PGR042G0728 Punica granatum HOM05D004394 ORTHO05D005208 3.2e-50 201.8 121 75.2
ECA238G4620 Erigeron canadensis HOM05D004394 ORTHO05D005208 4.2e-50 201.4 122 77.9
Lj2g0026973 Lotus japonicus HOM05D004394 ORTHO05D005208 5.5e-50 201.1 121 78.5
HanXRQChr07g0194691 Helianthus annuus HOM05D004394 ORTHO05D005208 7.2e-50 200.7 122 76.2
Cpa.g.sc53.145 Carica papaya HOM05D004394 ORTHO05D005208 1.6e-49 199.5 122 78.7
Phvul.002G138800 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 1.6e-49 199.5 128 72.7
Sc01g0000460 Simmondsia chinensis HOM05D004394 ORTHO05D005208 1.6e-49 199.5 121 76.0
HanXRQChr04g0126451 Helianthus annuus HOM05D004394 ORTHO05D005208 3.6e-49 198.4 122 75.4
Medtr1g050345 Medicago truncatula HOM05D004394 ORTHO05D005208 3.6e-49 198.4 121 77.7
Glyma.10G218300 Glycine max HOM05D004394 ORTHO05D005208 6.1e-49 197.6 121 75.2
MD15G1369300 Malus domestica HOM05D004394 ORTHO05D005208 6.1e-49 197.6 114 80.7
ATR0782G020 Amborella trichopoda HOM05D004394 ORTHO05D005208 7.9e-49 197.2 121 75.2
Lalb_Chr08g0242051 Lupinus albus HOM05D004394 ORTHO05D005208 1.0e-48 196.8 121 76.9
CDE06G0322 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 1.4e-48 196.4 121 75.2
AUR62027759 Chenopodium quinoa HOM05D004394 ORTHO05D005208 1.4e-48 196.4 121 74.4
Sabra05G0124400 Salix brachista HOM05D004394 ORTHO05D005208 1.4e-48 196.4 121 73.6
Cpa.g.sc36.132 Carica papaya HOM05D004394 ORTHO05D005208 3.0e-48 195.3 122 77.9
THA.LOC104800150 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 3.0e-48 195.3 123 75.6
CDE02G1736 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 3.9e-48 194.9 121 73.6
Lalb_Chr11g0065431 Lupinus albus HOM05D004394 ORTHO05D005208 5.1e-48 194.5 121 75.2
TWI36G1364 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 5.1e-48 194.5 122 73.0
BcaC06g34947 Brassica carinata HOM05D004394 ORTHO05D005208 6.7e-48 194.1 124 75.0
C07p21470 Brassica napus HOM05D004394 ORTHO05D005208 6.7e-48 194.1 124 75.0
BolC7t42673H Brassica oleracea HOM05D004394 ORTHO05D005208 6.7e-48 194.1 124 75.0
Solyc04g074150.3 Solanum lycopersicum HOM05D004394 ORTHO05D005208 6.7e-48 194.1 114 78.9
CARHR022650 Cardamine hirsuta HOM05D004394 ORTHO05D005208 8.8e-48 193.7 123 74.8
BcaB07g32248 Brassica carinata HOM05D004394 ORTHO05D005208 1.1e-47 193.4 128 71.9
Sp1g19780 Schrenkiella parvula HOM05D004394 ORTHO05D005208 1.5e-47 193.0 124 74.2
BraA07t29204Z Brassica rapa HOM05D004394 ORTHO05D005208 2.0e-47 192.6 124 74.2
Gohir.A05G267200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 2.0e-47 192.6 123 76.4
DCAR_008736 Daucus carota HOM05D004394 ORTHO05D005208 4.4e-47 191.4 122 72.1
Aa31LG7G6210 Aethionema arabicum HOM05D004394 ORTHO05D005208 5.7e-47 191.0 123 74.0
PSO781G0205 Papaver somniferum HOM05D004394 ORTHO05D005208 5.7e-47 191.0 121 72.7
A09p42510 Brassica napus HOM05D004394 ORTHO05D005208 9.7e-47 190.3 126 71.4
BraA09t39727Z Brassica rapa HOM05D004394 ORTHO05D005208 9.7e-47 190.3 126 71.4
Gorai.009G281400 Gossypium raimondii HOM05D004394 ORTHO05D005208 9.7e-47 190.3 123 75.6
A07p14580 Brassica napus HOM05D004394 ORTHO05D005208 1.3e-46 189.9 124 72.6
PSO541G5821 Papaver somniferum HOM05D004394 ORTHO05D005208 2.2e-46 189.1 121 71.9
THA.LOC104809715 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 2.2e-46 189.1 123 73.2
Gohir.D05G268800 Gossypium hirsutum HOM05D004394 ORTHO05D005208 2.8e-46 188.7 123 74.8
AL1G35720 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 4.8e-46 188.0 123 72.4
Carub.0001s2182 Capsella rubella HOM05D004394 ORTHO05D005208 6.3e-46 187.6 123 71.5
TWI12G1259 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 8.2e-46 187.2 122 73.8
BcaC05g26154 Brassica carinata HOM05D004394 ORTHO05D005208 4.1e-45 184.9 125 68.8
C05p21390 Brassica napus HOM05D004394 ORTHO05D005208 4.1e-45 184.9 125 68.8
AT1G22270 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 5.3e-45 184.5 123 70.7
COL.COLO4_16398 Corchorus olitorius HOM05D004394 ORTHO05D005208 5.3e-45 184.5 116 75.9
Thhalv10009116m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 1.2e-44 183.3 124 69.4
BolC5t30836H Brassica oleracea HOM05D004394 ORTHO05D005208 1.5e-44 183.0 124 68.5
SMO356G0508 Selaginella moellendorffii HOM05D004394 ORTHO05D005208 1.5e-44 183.0 121 70.2
SEGI_05614 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 2.0e-44 182.6 121 70.2
Mapoly0008s0078 Marchantia polymorpha HOM05D004394 ORTHO05D005208 3.5e-44 181.8 121 66.9
Thhalv10019322m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 5.9e-44 181.0 123 69.1
SHI20485 Sapria himalayana HOM05D004394 ORTHO05D005208 7.7e-44 180.6 121 69.4
EL10Ac1g01214 Beta vulgaris HOM05D004394 ORTHO05D005208 1.7e-43 179.5 114 72.8
CARHR071660 Cardamine hirsuta HOM05D004394 ORTHO05D005208 1.7e-43 179.5 123 67.5
Rhsim06G0082000 Rhododendron simsii HOM05D004394 ORTHO05D005208 2.2e-43 179.1 119 71.4
CANSAT35G1737 Cannabis sativa HOM05D004394 ORTHO05D005208 5.0e-43 177.9 115 72.2
CANSAT80G2909 Cannabis sativa HOM05D004394 ORTHO05D005208 8.5e-43 177.2 123 67.5
Sp5g33330 Schrenkiella parvula HOM05D004394 ORTHO05D005208 1.1e-42 176.8 123 68.3
AL2G38520 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 3.2e-42 175.3 123 68.3
Nn6g33602 Nelumbo nucifera HOM05D004394 ORTHO05D005208 3.2e-42 175.3 116 71.6
Pp3c10_8220 Physcomitrium patens HOM05D004394 ORTHO05D005208 3.2e-42 175.3 121 65.3
Haze_00323 Corylus avellana HOM05D004394 ORTHO05D005208 4.2e-42 174.9 121 70.2
BcaB03g15991 Brassica carinata HOM05D004394 ORTHO05D005208 5.5e-42 174.5 123 67.5
Nn4g22250 Nelumbo nucifera HOM05D004394 ORTHO05D005208 5.5e-42 174.5 109 72.5
Nitab4.5_0005777g0070 Nicotiana tabacum HOM05D004394 ORTHO05D005208 7.2e-42 174.1 114 72.8
BcaC08g47394 Brassica carinata HOM05D004394 ORTHO05D005208 1.6e-41 172.9 121 66.1
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 1.6e-41 172.9 121 65.3
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 1.6e-41 172.9 121 65.3
AT1G78190 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 2.7e-41 172.2 123 67.5
Carub.0002s2509 Capsella rubella HOM05D004394 ORTHO05D005208 3.6e-41 171.8 122 67.2
Cpa.g.sc247.5 Carica papaya HOM05D004394 ORTHO05D005208 3.6e-41 171.8 122 69.7
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 8.0e-41 170.6 124 63.7
BcaB03g14221 Brassica carinata HOM05D004394 ORTHO05D005208 2.3e-40 169.1 113 71.7
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 3.3e-39 165.2 121 62.8
CBR_g44926 Chara braunii HOM05D004394 ORTHO05D005208 7.4e-39 164.1 121 59.5
Cre12.g512550 Chlamydomonas reinhardtii HOM05D004394 ORTHO05D005208 1.7e-38 162.9 122 62.3
CiPaw.07G180000 Carya illinoinensis HOM05D004394 ORTHO05D005208 1.3e-35 153.3 106 67.9
AagrBONN_evm.TU.Sc2ySwM_344.4664 Anthoceros agrestis HOM05D004394 ORTHO05D005208 2.7e-33 145.6 121 55.4
AUR62038524 Chenopodium quinoa HOM05D004394 ORTHO05D005208 8.0e-33 144.1 85 71.8
Zm00001eb109660 Zea mays HOM05D004394 ORTHO05D005208 2.3e-32 142.5 130 47.7
Os07g0623000 Oryza sativa ssp. japonica HOM05D004394 ORTHO05D005208 4.4e-31 138.3 130 51.5
Cpa.g.sc257.3 Carica papaya HOM05D004394 ORTHO05D005208 1.2e-28 130.2 124 54.8
Nn8g39569 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.7e-27 126.3 123 53.7
MCO01G362 Micromonas commoda HOM05D004394 ORTHO05D005208 2.2e-27 125.9 123 52.0
PRCOL_00005343 Prasinoderma coloniale HOM05D004394 ORTHO05D005208 7.2e-26 120.9 130 45.4
Cfa016137 Carpinus fangiana HOM05D004394 ORTHO05D005208 1.0e-24 117.1 114 53.5
Haze_27710 Corylus avellana HOM05D004394 ORTHO05D005208 9.8e-23 110.5 122 47.5
SEGI_26774 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 5.4e-21 104.8 73 65.8
Lsat_1_v5_gn_4_16040 Lactuca sativa HOM05D004394 ORTHO05D005208 7.0e-21 104.4 122 48.4
QL05p087667 Quercus lobata HOM05D004394 ORTHO05D000126 1.2e-20 103.6 68 66.2
Nn1g03585 Nelumbo nucifera HOM05D004394 ORTHO05D005208 3.6e-17 92.0 57 71.9
HanXRQChr03g0069311 Helianthus annuus HOM05D004394 ORTHO05D005208 1.4e-08 63.5 39 64.1


User provided reference genes

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