Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv36431 Davidia involucrata HOM05D003648 ORTHO05D004267 5.3e-72 274.2 137 100.0
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 2.2e-41 172.6 96 89.6
Dinv19681 Davidia involucrata HOM05D003648 ORTHO05D004267 9.7e-26 120.6 78 83.3
Dinv12155 Davidia involucrata HOM05D000862 ORTHO05D000943 1.7e-25 119.8 66 92.4
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.8e-16 89.7 94 50.0
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 6.5e-14 81.3 61 59.0
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 1.1e-13 80.5 80 55.0
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 1.1e-13 80.5 97 53.6
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 4.2e-13 78.6 94 47.9
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 7.2e-13 77.8 87 51.7
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 9.4e-13 77.4 78 52.6
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 1.2e-12 77.0 69 56.5
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 2.7e-12 75.9 63 61.9
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 4.7e-12 75.1 79 53.2
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 4.7e-12 75.1 93 47.3
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 4.7e-12 75.1 43 76.7
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 6.1e-12 74.7 91 42.9
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 8.0e-12 74.3 44 75.0
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 8.0e-12 74.3 82 50.0
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 8.0e-12 74.3 103 45.6
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 1.0e-11 73.9 46 71.7
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 1.0e-11 73.9 47 74.5
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.0e-11 73.9 82 46.3
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 1.0e-11 73.9 49 67.3
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 1.8e-11 73.2 44 77.3
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 1.8e-11 73.2 43 79.1
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.8e-11 73.2 43 79.1
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 1.8e-11 73.2 97 45.4
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 2.3e-11 72.8 42 76.2
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 2.3e-11 72.8 78 52.6
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 3.0e-11 72.4 44 77.3
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 3.0e-11 72.4 77 49.4
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 4.0e-11 72.0 57 61.4
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 4.0e-11 72.0 57 61.4
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 4.0e-11 72.0 57 61.4
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 4.0e-11 72.0 50 70.0
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 4.0e-11 72.0 79 50.6
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 5.2e-11 71.6 78 53.8
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 6.8e-11 71.2 35 85.7
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 6.8e-11 71.2 57 66.7
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 6.8e-11 71.2 42 78.6
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 6.8e-11 71.2 93 46.2
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 8.8e-11 70.9 59 57.6
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 1.2e-10 70.5 60 63.3
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 1.2e-10 70.5 60 63.3
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 1.2e-10 70.5 47 66.0
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 1.2e-10 70.5 105 45.7
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 1.2e-10 70.5 35 85.7
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 1.2e-10 70.5 73 53.4
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 1.5e-10 70.1 45 71.1
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.5e-10 70.1 96 43.8
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 1.5e-10 70.1 82 48.8
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 2.0e-10 69.7 41 78.0
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 2.0e-10 69.7 41 78.0
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 2.0e-10 69.7 51 64.7
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 2.0e-10 69.7 35 82.9
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 2.0e-10 69.7 35 82.9
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 2.0e-10 69.7 53 64.2
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 2.0e-10 69.7 35 82.9
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 2.0e-10 69.7 44 72.7
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 2.0e-10 69.7 35 82.9
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 2.6e-10 69.3 35 82.9
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 2.6e-10 69.3 90 47.8
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 3.4e-10 68.9 45 66.7
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 3.4e-10 68.9 100 45.0
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 4.4e-10 68.6 87 47.1
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 5.7e-10 68.2 87 47.1
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 5.7e-10 68.2 39 74.4
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 5.7e-10 68.2 91 42.9
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 5.7e-10 68.2 67 53.7
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 5.7e-10 68.2 78 48.7
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 5.7e-10 68.2 102 44.1
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 7.5e-10 67.8 80 47.5
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 7.5e-10 67.8 46 65.2
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 7.5e-10 67.8 35 80.0
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 7.5e-10 67.8 35 80.0
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 7.5e-10 67.8 131 38.2
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 7.5e-10 67.8 35 82.9
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 7.5e-10 67.8 112 42.0
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 7.5e-10 67.8 42 76.2
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 7.5e-10 67.8 93 41.9
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 7.5e-10 67.8 32 84.4
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 9.8e-10 67.4 47 66.0
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 9.8e-10 67.4 59 57.6
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 9.8e-10 67.4 79 50.6
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 9.8e-10 67.4 79 50.6
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 9.8e-10 67.4 43 72.1
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 9.8e-10 67.4 43 72.1
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 9.8e-10 67.4 35 80.0
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 1.3e-09 67.0 61 59.0
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 1.3e-09 67.0 92 45.7
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 1.3e-09 67.0 93 40.9
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 1.3e-09 67.0 73 52.1
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 1.3e-09 67.0 86 48.8
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 1.7e-09 66.6 101 39.6
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 1.7e-09 66.6 97 44.3
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.7e-09 66.6 32 84.4
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 1.7e-09 66.6 91 46.2
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 2.2e-09 66.2 81 50.6
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 2.2e-09 66.2 79 50.6
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 2.8e-09 65.9 78 53.8
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 2.8e-09 65.9 59 55.9
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 3.7e-09 65.5 108 37.0
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 3.7e-09 65.5 56 58.9
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 4.8e-09 65.1 83 45.8
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 4.8e-09 65.1 89 44.9
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 4.8e-09 65.1 85 41.2
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 4.8e-09 65.1 100 41.0
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 4.8e-09 65.1 31 87.1
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 4.8e-09 65.1 31 87.1
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 6.3e-09 64.7 38 71.1
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 6.3e-09 64.7 56 55.4
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 6.3e-09 64.7 46 65.2
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 6.3e-09 64.7 34 79.4
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 6.3e-09 64.7 72 48.6
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 6.3e-09 64.7 48 64.6
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 6.3e-09 64.7 48 64.6
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 6.3e-09 64.7 99 39.4
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 8.3e-09 64.3 102 40.2
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 8.3e-09 64.3 96 42.7
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 8.3e-09 64.3 32 81.2
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.1e-08 63.9 53 58.5
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 1.1e-08 63.9 73 49.3
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 1.1e-08 63.9 65 55.4
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 1.1e-08 63.9 52 59.6
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 1.1e-08 63.9 77 48.1
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 1.4e-08 63.5 70 51.4
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 1.8e-08 63.2 41 65.9
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 1.8e-08 63.2 32 81.2
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 1.8e-08 63.2 32 81.2
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 2.4e-08 62.8 79 45.6
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 3.1e-08 62.4 53 58.5
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 3.1e-08 62.4 53 58.5
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 3.1e-08 62.4 81 45.7
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 3.1e-08 62.4 56 55.4
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 4.1e-08 62.0 80 45.0
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 4.1e-08 62.0 43 60.5
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 5.4e-08 61.6 94 42.6
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 5.4e-08 61.6 113 36.3
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 7.0e-08 61.2 62 53.2
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 9.1e-08 60.8 30 83.3
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 9.1e-08 60.8 30 83.3
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 9.1e-08 60.8 30 83.3
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 9.1e-08 60.8 30 83.3
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 1.2e-07 60.5 108 36.1
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 1.2e-07 60.5 108 36.1
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 1.2e-07 60.5 108 36.1
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.2e-07 60.5 95 37.9
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 2.0e-07 59.7 52 57.7
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 2.0e-07 59.7 52 57.7
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 2.0e-07 59.7 52 57.7
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 2.0e-07 59.7 52 57.7
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 2.0e-07 59.7 52 57.7
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 2.0e-07 59.7 51 58.8
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 3.5e-07 58.9 110 35.5
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 3.5e-07 58.9 81 46.9
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 7.7e-07 57.8 47 59.6
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 1.3e-06 57.0 25 92.0
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 5.0e-06 55.1 29 79.3
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 6.6e-06 54.7 85 40.0


User provided reference genes

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