Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv36283 Davidia involucrata HOM05D005867 ORTHO05D007273 2.8e-174 615.1 306 100.0
Dinv08036 Davidia involucrata HOM05D005867 ORTHO05D007273 3.0e-99 365.9 213 83.6
Rhsim13G0224100 Rhododendron simsii HOM05D005867 ORTHO05D007273 6.8e-96 354.8 186 90.3
Actinidia16309 Actinidia chinensis HOM05D005867 ORTHO05D007273 2.6e-95 352.8 201 83.1
COL.COLO4_24845 Corchorus olitorius HOM05D005867 ORTHO05D007273 2.9e-94 349.4 186 87.1
Gohir.A05G068300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 1.1e-93 347.4 186 87.6
Gorai.009G072300 Gossypium raimondii HOM05D005867 ORTHO05D007273 1.1e-93 347.4 186 88.2
Sed0004394 Sechium edule HOM05D005867 ORTHO05D007273 2.4e-93 346.3 186 87.1
MELO3C015200.2 Cucumis melo HOM05D005867 ORTHO05D007273 4.2e-93 345.5 186 87.6
Ciclev10016610m.g Citrus clementina HOM05D005867 ORTHO05D007273 5.4e-93 345.1 189 85.7
CsaV3_1G042730 Cucumis sativus L. HOM05D005867 ORTHO05D007273 5.4e-93 345.1 186 87.6
ClCG03G013300 Citrullus lanatus HOM05D005867 ORTHO05D007273 7.1e-93 344.7 185 87.6
Duzib168G0296 Durio zibethinus HOM05D005867 ORTHO05D007273 7.1e-93 344.7 186 86.6
Cpa.g.sc84.80 Carica papaya HOM05D005867 ORTHO05D007273 9.2e-93 344.4 186 87.1
Gohir.D05G071300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 1.2e-92 344.0 186 87.1
Sabra01G0013100 Salix brachista HOM05D005867 ORTHO05D007273 1.2e-92 344.0 186 84.9
TAR636G0304 Trochodendron aralioides HOM05D005867 ORTHO05D007273 1.2e-92 344.0 186 87.1
MSTRG.21396 Avicennia marina HOM05D005867 ORTHO05D007273 1.6e-92 343.6 186 87.1
Thecc.09G227900 Theobroma cacao HOM05D005867 ORTHO05D007273 1.6e-92 343.6 186 85.5
EL10Ac4g10299 Beta vulgaris HOM05D005867 ORTHO05D007273 2.1e-92 343.2 188 85.6
THA.LOC104804975 Tarenaya hassleriana HOM05D005867 ORTHO05D007273 3.5e-92 342.4 185 86.5
Cc01_g01980 Coffea canephora HOM05D005867 ORTHO05D007273 4.6e-92 342.0 186 86.0
TAR633G2552 Trochodendron aralioides HOM05D005867 ORTHO05D007273 6.0e-92 341.7 185 85.9
ECA238G1591 Erigeron canadensis HOM05D005867 ORTHO05D007273 7.8e-92 341.3 181 87.8
GSVIVG01025306001 Vitis vinifera HOM05D005867 ORTHO05D007273 7.8e-92 341.3 186 84.9
Ah.04g161870 Amaranthus hybridus HOM05D005867 ORTHO05D007273 1.0e-91 340.9 187 84.5
DCAR_002056 Daucus carota HOM05D005867 ORTHO05D007273 1.0e-91 340.9 186 86.0
Cfa009733 Carpinus fangiana HOM05D005867 ORTHO05D007273 1.3e-91 340.5 186 86.0
HanXRQChr02g0036871 Helianthus annuus HOM05D005867 ORTHO05D007273 1.7e-91 340.1 188 85.6
Peaxi162Scf00029g00326 Petunia axillaris HOM05D005867 ORTHO05D007273 1.7e-91 340.1 194 83.5
CSS0048722 Camellia sinensis var. sinensis HOM05D005867 ORTHO05D007273 2.3e-91 339.7 182 87.9
AUR62000096 Chenopodium quinoa HOM05D005867 ORTHO05D007273 3.0e-91 339.3 186 84.4
AUR62019269 Chenopodium quinoa HOM05D005867 ORTHO05D007273 3.0e-91 339.3 186 84.4
CANSAT54G1708 Cannabis sativa HOM05D005867 ORTHO05D007273 3.9e-91 339.0 186 85.5
CiPaw.13G163600 Carya illinoinensis HOM05D005867 ORTHO05D007273 3.9e-91 339.0 186 86.6
Lsat_1_v5_gn_2_100781 Lactuca sativa HOM05D005867 ORTHO05D007273 6.6e-91 338.2 191 84.3
Potri.001G018500 Populus trichocarpa HOM05D005867 ORTHO05D007273 6.6e-91 338.2 186 83.9
PGSC0003DMG400023838 Solanum tuberosum HOM05D005867 ORTHO05D007273 6.6e-91 338.2 184 87.0
Ah.06g193630 Amaranthus hybridus HOM05D005867 ORTHO05D007273 1.1e-90 337.4 186 83.9
Atru.chr3.2589 Acer truncatum HOM05D005867 ORTHO05D007273 1.9e-90 336.7 186 83.9
HanXRQChr14g0453051 Helianthus annuus HOM05D005867 ORTHO05D007273 1.9e-90 336.7 188 85.6
MD03G1024000 Malus domestica HOM05D005867 ORTHO05D007273 1.9e-90 336.7 186 84.9
Nitab4.5_0001925g0100 Nicotiana tabacum HOM05D005867 ORTHO05D007273 2.5e-90 336.3 181 86.7
PGR119G1510 Punica granatum HOM05D005867 ORTHO05D007273 3.3e-90 335.9 186 84.9
Eucgr.J00791 Eucalyptus grandis HOM05D005867 ORTHO05D007273 4.3e-90 335.5 186 83.9
Manes.06G166900 Manihot esculenta HOM05D005867 ORTHO05D007273 4.3e-90 335.5 186 84.4
RcHm_v2.0_Chr5g0077191 Rosa chinensis HOM05D005867 ORTHO05D007273 4.3e-90 335.5 184 84.8
Oeu035742.1 Olea europaea HOM05D005867 ORTHO05D007273 5.6e-90 335.1 185 85.4
SGA_v2.0_scaffold8G04610 Striga asiatica HOM05D005867 ORTHO05D007273 5.6e-90 335.1 186 84.4
MSTRG.17581 Avicennia marina HOM05D005867 ORTHO05D007273 7.3e-90 334.7 186 84.9
Migut.N02304 Erythranthe guttata HOM05D005867 ORTHO05D007273 7.3e-90 334.7 186 83.9
Sopen12g034670 Solanum pennellii HOM05D005867 ORTHO05D007273 7.3e-90 334.7 184 85.9
Prupe.6G023200 Prunus persica HOM05D005867 ORTHO05D007273 9.6e-90 334.3 184 84.2
Solyc12g100050.2 Solanum lycopersicum HOM05D005867 ORTHO05D007273 9.6e-90 334.3 184 85.9
Migut.D00576 Erythranthe guttata HOM05D005867 ORTHO05D007273 1.2e-89 334.0 182 85.2
Nn2g15416 Nelumbo nucifera HOM05D005867 ORTHO05D007273 1.2e-89 334.0 186 84.9
CAN.G575.64 Capsicum annuum HOM05D005867 ORTHO05D007273 1.6e-89 333.6 184 84.8
Nitab4.5_0002766g0030 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.6e-89 333.6 190 82.1
Nitab4.5_0008647g0010 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.6e-89 333.6 181 85.6
PGSC0003DMG400013588 Solanum tuberosum HOM05D005867 ORTHO05D007273 1.6e-89 333.6 184 84.2
VMungo1080G0295 Vigna mungo HOM05D005867 ORTHO05D007273 1.6e-89 333.6 186 83.9
Sc06g0004490 Simmondsia chinensis HOM05D005867 ORTHO05D007273 2.1e-89 333.2 186 84.9
SalBow4G1382 Salvia bowleyana HOM05D005867 ORTHO05D007273 3.6e-89 332.4 184 84.2
Aa31LG3G14590 Aethionema arabicum HOM05D005867 ORTHO05D007273 4.7e-89 332.0 186 82.3
SHI29727 Sapria himalayana HOM05D005867 ORTHO05D007273 6.2e-89 331.6 186 81.2
MD11G1028900 Malus domestica HOM05D005867 ORTHO05D007273 8.1e-89 331.3 186 83.3
SalBow4G0034 Salvia bowleyana HOM05D005867 ORTHO05D007273 1.1e-88 330.9 184 83.7
Glyma.15G033100 Glycine max HOM05D005867 ORTHO05D007273 1.4e-88 330.5 186 84.4
Nitab4.5_0008868g0020 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.4e-88 330.5 190 82.1
QL01p005337 Quercus lobata HOM05D005867 ORTHO05D007273 2.4e-88 329.7 185 82.2
TWI60G1455 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 2.4e-88 329.7 186 83.9
Phvul.L010243 Phaseolus vulgaris HOM05D005867 ORTHO05D007273 5.3e-88 328.6 186 82.8
Thhalv10014788m.g Eutrema salsugineum HOM05D005867 ORTHO05D007273 9.0e-88 327.8 183 82.0
Carub.0006s1124 Capsella rubella HOM05D005867 ORTHO05D007273 1.2e-87 327.4 183 82.0
Solyc11g061760.3 Solanum lycopersicum HOM05D005867 ORTHO05D007273 1.2e-87 327.4 182 83.0
Sopen11g023660 Solanum pennellii HOM05D005867 ORTHO05D007273 1.2e-87 327.4 182 83.0
AL6G23670 Arabidopsis lyrata HOM05D005867 ORTHO05D007273 1.5e-87 327.0 183 82.0
AT5G13070 Arabidopsis thaliana HOM05D005867 ORTHO05D007273 1.5e-87 327.0 183 82.0
Sp6g30910 Schrenkiella parvula HOM05D005867 ORTHO05D007273 1.5e-87 327.0 183 81.4
BcaC04g19155 Brassica carinata HOM05D002203 ORTHO05D007273 2.0e-87 326.6 184 81.0
CARHR200400 Cardamine hirsuta HOM05D005867 ORTHO05D007273 2.0e-87 326.6 183 82.0
Haze_23087 Corylus avellana HOM05D005867 ORTHO05D007273 2.0e-87 326.6 186 83.9
FAN25G0812 Fragaria x ananassa HOM05D005867 ORTHO05D007273 2.6e-87 326.2 184 83.2
FAN11G1123 Fragaria x ananassa HOM05D005867 ORTHO05D007273 4.4e-87 325.5 185 81.6
Oeu052048.1 Olea europaea HOM05D005867 ORTHO05D007273 7.6e-87 324.7 185 82.7
A02p01670 Brassica napus HOM05D005867 ORTHO05D007273 1.3e-86 323.9 183 80.3
BolC2t06533H Brassica oleracea HOM05D005867 ORTHO05D007273 1.3e-86 323.9 183 80.3
BraA02t05146Z Brassica rapa HOM05D005867 ORTHO05D007273 1.3e-86 323.9 183 80.3
FvH4_3g43090 Fragaria vesca HOM05D005867 ORTHO05D007273 1.3e-86 323.9 184 82.1
BcaNung01858 Brassica carinata HOM05D005867 ORTHO05D007273 2.9e-86 322.8 183 79.8
C02p05880 Brassica napus HOM05D005867 ORTHO05D007273 6.4e-86 321.6 183 79.2
BraA10t44575Z Brassica rapa HOM05D005867 ORTHO05D007273 1.1e-85 320.9 183 80.3
FAN21G2433 Fragaria x ananassa HOM05D005867 ORTHO05D007273 1.9e-85 320.1 184 81.0
A10p25130 Brassica napus HOM05D005867 ORTHO05D007273 2.4e-85 319.7 183 79.8
BcaNung01174 Brassica carinata HOM05D005867 ORTHO05D007273 3.2e-85 319.3 183 79.2
FAN16G1279 Fragaria x ananassa HOM05D005867 ORTHO05D007273 7.1e-85 318.2 184 81.5
unitig_21.g20645 Utricularia gibba HOM05D005867 ORTHO05D007273 9.3e-85 317.8 186 76.3
TWI34G0922 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 2.1e-84 316.6 172 86.0
C09p64030 Brassica napus HOM05D005867 ORTHO05D007273 1.3e-83 313.9 184 77.7
BolC9t59241H Brassica oleracea HOM05D005867 ORTHO05D007273 1.7e-83 313.5 183 78.1
Lalb_Chr14g0372181 Lupinus albus HOM05D005867 ORTHO05D007273 5.1e-83 312.0 186 80.1
Aqoxy1G00241 Aquilegia oxysepala HOM05D005867 ORTHO05D007273 2.5e-82 309.7 184 77.7
Duzib150G0087 Durio zibethinus HOM05D005867 ORTHO05D007273 5.6e-82 308.5 187 79.7
PSO384G4422 Papaver somniferum HOM05D005867 ORTHO05D007273 3.6e-81 305.8 187 77.5
arahy.Tifrunner.gnm1.ann1.V9D8IR Arachis hypogaea HOM05D005867 ORTHO05D007273 4.8e-81 305.4 186 78.0
arahy.Tifrunner.gnm1.ann1.2D2P15 Arachis hypogaea HOM05D005867 ORTHO05D007273 1.1e-80 304.3 186 77.4
PSO339G4569 Papaver somniferum HOM05D005867 ORTHO05D007273 3.1e-80 302.8 187 77.0
TPR.G6870 Trifolium pratense HOM05D005867 ORTHO05D007273 2.6e-79 299.7 186 75.3
Cfa009734 Carpinus fangiana HOM05D005867 ORTHO05D007273 9.9e-79 297.7 185 74.6
Lj3g0003495 Lotus japonicus HOM05D005867 ORTHO05D007273 1.7e-78 297.0 186 75.8
Ca_01285_v3 Cicer arietinum L. HOM05D005867 ORTHO05D007273 6.4e-78 295.0 186 74.7
Medtr1g058050 Medicago truncatula HOM05D005867 ORTHO05D007273 6.4e-78 295.0 187 73.8
Psat5g287440 Pisum sativum HOM05D005867 ORTHO05D007273 8.4e-78 294.7 186 74.2
Medtr2g017985 Medicago truncatula HOM05D005867 ORTHO05D007273 2.4e-77 293.1 186 73.1
Medtr8g096810 Medicago truncatula HOM05D005867 ORTHO05D007273 5.4e-77 292.0 186 73.1
Medtr2g098170 Medicago truncatula HOM05D005867 ORTHO05D007273 9.3e-77 291.2 186 73.1
MBI17_g30524_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 4.6e-76 288.9 173 76.3
QL01p005297 Quercus lobata HOM05D005867 ORTHO05D007273 1.3e-73 280.8 184 70.1
CiPaw.13G163500 Carya illinoinensis HOM05D005867 ORTHO05D007273 1.6e-73 280.4 186 71.0
ATR0605G298 Amborella trichopoda HOM05D005867 ORTHO05D007273 5.5e-69 265.4 186 66.1
Mapoly0061s0125 Marchantia polymorpha HOM05D005867 ORTHO05D007273 5.3e-64 248.8 183 56.3
SMO147G0033 Selaginella moellendorffii HOM05D005867 ORTHO05D007273 7.9e-60 235.0 181 58.0
Pp3c14_26010 Physcomitrium patens HOM05D005867 ORTHO05D007273 5.3e-56 222.2 177 54.8
MBI01_g27622_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 6.9e-56 221.9 172 64.0
Pp3c1_37310 Physcomitrium patens HOM05D005867 ORTHO05D007273 7.7e-55 218.4 183 53.6
Os02g0717900 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 2.2e-54 216.9 187 52.4
CBR_g20418 Chara braunii HOM05D005867 ORTHO05D007273 2.7e-52 209.9 180 53.9
HPP92_022794 Vanilla planifolia HOM05D005867 ORTHO05D007273 2.1e-44 183.7 168 51.2
Os09g0486000 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 1.3e-41 174.5 180 48.9
Lj2P647T17 Lonicera japonica HOM05D005867 ORTHO05D007273 3.1e-40 169.9 89 92.1
Zm00001eb316590 Zea mays HOM05D005867 ORTHO05D007273 5.3e-32 142.5 194 40.2
Zm00001eb189280 Zea mays HOM05D005867 ORTHO05D007273 7.5e-26 122.1 88 63.6
Mapoly0008s0230 Marchantia polymorpha HOM05D005867 ORTHO05D254737 2.2e-25 120.6 157 38.2
Actinidia28459 Actinidia chinensis HOM05D005867 ORTHO05D055216 7.2e-21 105.5 62 77.4
Cfa022043 Carpinus fangiana HOM05D002321 ORTHO05D006940 1.1e-08 65.1 126 31.7
Dinv12467 Davidia involucrata HOM05D019416 ORTHO05D183971 1.2e-07 61.6 57 59.6
Dinv42335 Davidia involucrata HOM05D000521 ORTHO05D000384 8.6e-06 55.5 42 64.3


User provided reference genes

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