Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 0.0e+00 1366.3 722 100.0
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 7.8e-308 1060.1 650 87.5
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 3.4e-287 991.5 651 80.3
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 8.1e-281 970.3 656 77.9
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 6.4e-278 960.7 650 77.8
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 8.4e-278 960.3 652 79.3
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 2.0e-263 912.5 649 73.3
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 4.2e-261 904.8 652 75.8
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 1.5e-255 886.3 616 74.7
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 1.6e-252 876.3 642 71.3
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 2.1e-252 875.9 651 71.7
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 2.3e-251 872.5 639 70.7
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 2.3e-251 872.5 654 69.7
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 3.0e-251 872.1 650 70.2
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 1.1e-250 870.2 655 69.0
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 1.8e-248 862.8 634 70.2
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 5.3e-248 861.3 645 71.8
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 6.9e-248 860.9 660 69.7
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 1.7e-246 856.3 648 70.8
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 2.2e-246 855.9 669 69.2
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 1.1e-245 853.6 651 69.3
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 1.4e-245 853.2 663 70.7
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 4.2e-245 851.7 649 69.3
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 2.1e-244 849.4 649 69.2
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 1.4e-243 846.7 653 69.4
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 6.7e-243 844.3 661 69.0
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 6.7e-243 844.3 664 70.2
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 1.5e-242 843.2 692 66.0
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 2.0e-242 842.8 648 69.0
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 7.4e-242 840.9 657 68.2
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 1.7e-241 839.7 654 68.3
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 1.4e-240 836.6 631 69.6
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 2.4e-240 835.9 657 69.6
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 4.1e-240 835.1 654 68.0
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 7.0e-240 834.3 640 69.5
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 2.6e-239 832.4 631 68.8
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 3.4e-239 832.0 682 65.4
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 4.5e-239 831.6 656 67.4
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 5.9e-239 831.2 658 68.2
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 1.3e-238 830.1 650 67.8
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.8e-238 828.6 635 69.6
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 5.0e-238 828.2 631 69.4
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 7.2e-237 824.3 645 67.6
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.2e-236 823.5 661 67.8
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 2.1e-236 822.8 650 67.1
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 2.1e-236 822.8 631 68.8
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 4.7e-236 821.6 630 68.4
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 6.1e-236 821.2 650 66.8
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 8.0e-236 820.8 650 66.9
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 1.4e-235 820.1 653 66.5
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 2.3e-235 819.3 653 66.5
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 1.7e-233 813.1 646 66.9
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 2.8e-233 812.4 657 66.7
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 4.8e-233 811.6 652 66.6
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 1.8e-232 809.7 650 66.9
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 2.4e-232 809.3 645 67.6
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.4e-232 809.3 660 67.6
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 3.5e-231 805.4 693 63.3
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 1.0e-230 803.9 662 66.2
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 6.5e-230 801.2 631 67.0
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 4.2e-229 798.5 650 65.5
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 7.2e-229 797.7 651 65.6
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 7.2e-229 797.7 649 64.7
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 2.1e-228 796.2 657 66.4
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 8.8e-227 790.8 651 63.4
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 1.2e-226 790.4 653 64.0
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 1.3e-225 786.9 658 63.2
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 4.8e-225 785.0 649 63.8
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 2.4e-224 782.7 648 64.2
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 4.1e-224 781.9 648 64.0
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 5.3e-224 781.6 631 67.0
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 2.0e-223 779.6 661 62.3
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 2.7e-223 779.2 644 64.6
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 7.7e-223 777.7 653 64.3
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 1.0e-222 777.3 644 64.6
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 8.5e-222 774.2 647 63.5
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 3.2e-221 772.3 644 63.8
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 5.5e-221 771.5 644 63.5
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 9.4e-221 770.8 653 64.0
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 2.7e-220 769.2 644 63.5
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 8.0e-220 767.7 647 62.9
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 1.4e-219 766.9 577 68.5
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 3.0e-219 765.8 645 63.1
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 5.2e-219 765.0 646 63.0
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 5.2e-219 765.0 646 63.0
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 6.8e-219 764.6 530 75.3
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 1.3e-217 760.4 647 62.6
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.7e-217 758.8 664 64.2
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 2.4e-216 756.1 644 62.6
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 3.1e-216 755.7 575 71.3
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 5.9e-215 751.5 575 70.4
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 1.0e-214 750.7 634 64.4
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 1.3e-214 750.4 653 60.8
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 5.0e-214 748.4 632 63.0
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 2.5e-213 746.1 630 63.8
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 1.2e-212 743.8 531 72.3
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 6.3e-209 731.5 650 58.6
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 1.1e-205 720.7 651 60.5
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 3.6e-204 715.7 651 60.4
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 4.1e-200 702.2 566 68.4
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 1.9e-197 693.3 633 62.9
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 8.0e-196 688.0 653 61.1
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 2.9e-193 679.5 501 70.9
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 6.8e-187 658.3 648 56.2
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 3.4e-186 656.0 532 63.3
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 2.2e-185 653.3 520 65.4
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 4.9e-177 625.5 651 52.4
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 4.6e-175 619.0 653 51.6
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 1.7e-169 600.5 672 50.9
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 4.3e-165 585.9 660 49.7
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 1.5e-162 577.4 402 74.6
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 6.7e-158 562.0 398 77.9
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 6.0e-151 538.9 660 46.2
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 2.9e-145 520.0 651 47.5
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 3.0e-142 510.0 427 63.2
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 6.7e-142 508.8 653 45.3
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 5.7e-141 505.8 653 45.5
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 1.2e-138 498.0 650 42.5
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 1.5e-138 497.7 660 45.5
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 7.2e-136 488.8 396 64.9
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 6.1e-95 352.8 236 77.5
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 1.8e-91 341.3 602 39.2
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 1.9e-88 331.3 240 71.7
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 2.3e-86 324.3 429 46.2
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 1.5e-77 295.0 284 57.0
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 7.3e-72 276.2 217 70.5
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 5.8e-69 266.5 443 40.2
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 1.7e-68 265.0 404 44.3
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 3.9e-65 253.8 602 34.6
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 7.8e-58 229.6 194 67.5
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 4.4e-53 213.8 252 49.6
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.4e-51 208.8 236 55.5
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 3.2e-51 207.6 327 43.4
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 1.7e-49 201.8 209 55.0
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 9.6e-48 196.1 257 47.1
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.7e-42 177.9 133 69.9
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 8.7e-41 172.9 174 54.0
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 2.8e-39 167.9 246 43.5
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.9e-36 157.9 121 74.4
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 5.7e-32 143.7 187 46.0
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 6.3e-31 140.2 623 25.2
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 3.4e-29 134.4 96 70.8
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 3.8e-28 131.0 95 66.3
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 3.2e-27 127.9 96 67.7
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.8e-23 114.0 134 51.5
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.1e-22 112.8 132 52.3
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.4e-22 112.5 132 50.8
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 3.4e-21 107.8 148 47.3
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 8.5e-20 103.2 78 66.7
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 1.9e-19 102.1 86 60.5
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 1.2e-18 99.4 75 69.3
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.1e-16 92.8 67 70.1
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.1e-16 92.8 69 68.1
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 2.6e-13 81.6 102 46.1
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 6.5e-12 77.0 67 62.7
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 7.2e-11 73.6 65 58.5
Dinv18208 Davidia involucrata HOM05D000103 ORTHO05D000049 1.2e-10 72.8 53 77.4
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 2.1e-10 72.0 74 52.7
EL10Ac3g06409 Beta vulgaris HOM05D004114 ORTHO05D004667 1.8e-09 68.9 54 55.6
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 2.6e-08 65.1 107 45.8
BcaB04g17225 Brassica carinata HOM05D004114 ORTHO05D004667 3.3e-08 64.7 52 59.6
arahy.Tifrunner.gnm1.ann1.LY7CXU Arachis hypogaea HOM05D004114 ORTHO05D004667 7.4e-08 63.5 57 49.1
Cfa026112 Carpinus fangiana HOM05D004114 ORTHO05D125150 2.2e-07 62.0 119 31.9
C05p12260 Brassica napus HOM05D004114 ORTHO05D024134 1.8e-06 58.9 66 51.5
BolC2t10474H Brassica oleracea HOM05D004114 ORTHO05D024134 1.8e-06 58.9 64 51.6
BolC2t10479H Brassica oleracea HOM05D004114 ORTHO05D024134 1.8e-06 58.9 64 51.6


User provided reference genes

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