Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 3.5e-186 654.8 330 100.0
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 1.0e-105 387.5 294 70.1
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 1.6e-103 380.2 294 68.0
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 9.0e-102 374.4 297 66.7
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.2e-100 369.8 294 64.6
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 2.9e-100 369.4 294 64.6
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 3.8e-100 369.0 294 64.3
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 1.1e-99 367.5 294 64.6
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 1.4e-99 367.1 294 63.9
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 3.2e-99 365.9 294 65.6
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 4.2e-99 365.5 298 64.4
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 5.5e-99 365.2 294 63.9
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 5.5e-99 365.2 294 64.3
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 7.1e-99 364.8 249 76.3
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 2.7e-98 362.8 294 63.9
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 3.9e-97 359.0 305 64.6
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 1.1e-96 357.5 273 68.9
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 1.1e-96 357.5 310 61.0
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 1.5e-96 357.1 299 61.2
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 4.3e-96 355.5 294 63.3
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 1.3e-95 354.0 308 61.7
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 1.6e-95 353.6 291 63.6
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 1.2e-93 347.4 307 61.9
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 3.4e-93 345.9 300 63.0
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 1.7e-92 343.6 309 61.8
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 2.2e-92 343.2 301 59.5
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 5.5e-91 338.6 273 63.7
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 9.3e-91 337.8 295 60.7
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 2.7e-90 336.3 294 59.9
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 3.5e-90 335.9 270 65.9
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 4.6e-90 335.5 308 60.1
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 7.9e-90 334.7 295 61.4
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 1.0e-89 334.3 294 60.2
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 3.9e-89 332.4 294 59.9
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 6.7e-89 331.6 294 60.2
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 1.1e-88 330.9 309 59.5
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 1.5e-88 330.5 296 60.8
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 1.9e-88 330.1 313 57.5
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 3.3e-88 329.3 295 59.7
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 5.7e-88 328.6 332 57.5
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 7.4e-88 328.2 316 58.2
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 9.7e-88 327.8 310 56.5
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 3.1e-86 322.8 294 59.9
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 6.9e-86 321.6 314 56.7
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 1.5e-85 320.5 312 58.0
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 2.0e-85 320.1 301 60.5
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 4.5e-85 318.9 313 56.2
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 1.3e-84 317.4 309 57.3
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 2.9e-84 316.2 303 57.1
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 2.9e-84 316.2 294 57.5
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.9e-84 316.2 324 54.9
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 2.9e-84 316.2 234 69.2
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 3.8e-84 315.8 319 56.7
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 1.1e-83 314.3 292 56.8
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 3.2e-83 312.8 310 57.1
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 1.2e-82 310.8 313 55.6
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 1.6e-82 310.5 291 57.4
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 1.6e-82 310.5 299 55.9
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 6.1e-82 308.5 310 57.4
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 1.0e-81 307.8 218 70.6
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 1.4e-81 307.4 303 54.5
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 3.0e-81 306.2 289 57.4
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 3.3e-80 302.8 277 57.4
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 4.3e-80 302.4 309 55.7
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 1.3e-79 300.8 275 57.5
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 2.2e-79 300.1 310 54.5
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.5e-77 293.9 331 51.1
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.5e-77 293.9 326 51.5
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 1.5e-77 293.9 300 52.7
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 2.6e-77 293.1 308 52.3
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 1.7e-76 290.4 281 58.4
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 2.5e-75 286.6 299 52.8
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 4.2e-75 285.8 299 51.5
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 5.5e-75 285.4 312 50.6
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 5.5e-75 285.4 311 55.3
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 7.2e-75 285.0 315 50.2
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 1.0e-73 281.2 298 52.7
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 3.0e-73 279.6 315 50.2
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 3.0e-73 279.6 315 50.2
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 6.7e-73 278.5 315 50.2
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 8.8e-73 278.1 225 62.7
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 3.7e-71 272.7 316 50.6
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 9.1e-70 268.1 319 47.6
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 1.2e-69 267.7 304 52.6
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 7.7e-69 265.0 315 48.3
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 2.9e-68 263.1 314 49.4
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 2.9e-68 263.1 317 47.9
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 6.5e-68 261.9 312 48.7
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 1.9e-67 260.4 315 47.9
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 3.6e-66 256.1 234 58.5
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 4.7e-66 255.8 307 46.9
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 6.1e-66 255.4 309 46.0
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 6.1e-66 255.4 320 46.9
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 6.7e-65 251.9 311 48.2
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 5.7e-64 248.8 250 54.4
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 8.2e-63 245.0 272 51.5
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 4.1e-62 242.7 281 49.8
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 4.1e-62 242.7 273 52.7
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 7.7e-61 238.4 274 48.5
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 3.8e-60 236.1 335 44.8
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 5.0e-60 235.7 290 49.3
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 3.2e-59 233.0 290 49.0
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 9.4e-59 231.5 290 48.3
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 1.2e-58 231.1 326 45.7
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 3.0e-57 226.5 318 43.4
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.5e-56 224.2 233 54.5
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.5e-56 224.2 233 54.5
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 3.4e-56 223.0 210 59.5
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 2.8e-55 219.9 249 48.2
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 9.4e-51 204.9 163 62.0
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 1.6e-50 204.1 259 49.8
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 2.1e-50 203.8 238 45.8
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 1.2e-48 198.0 243 48.1
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 4.1e-46 189.5 270 43.3
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 5.9e-45 185.7 264 39.0
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 2.9e-44 183.3 159 62.3
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 2.5e-43 180.3 215 43.7
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 3.3e-43 179.9 248 44.4
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 5.5e-43 179.1 212 43.9
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 9.5e-43 178.3 190 52.1
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 6.8e-41 172.2 122 68.0
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 3.4e-40 169.9 309 35.6
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 1.3e-36 157.9 138 59.4
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 2.9e-36 156.8 148 58.1
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 5.0e-36 156.0 150 54.7
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 5.0e-36 156.0 175 49.1
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 1.4e-33 147.9 130 58.5
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 8.9e-33 145.2 222 41.0
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 9.8e-32 141.7 128 55.5
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 3.2e-30 136.7 143 51.7
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 1.3e-28 131.3 200 40.0
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 3.0e-28 130.2 180 43.3
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 3.9e-28 129.8 93 67.7
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 5.0e-28 129.4 144 45.8
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.1e-27 128.3 223 41.3
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 7.3e-27 125.6 148 50.0
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 3.7e-23 113.2 151 43.0
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 1.1e-22 111.7 155 41.9
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 7.8e-21 105.5 268 29.5
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 5.1e-20 102.8 201 35.8
Aqoxy6G02632 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 3.2e-14 83.6 67 64.2
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 1.5e-11 74.7 179 27.9
Peaxi162Scf00376g00009 Petunia axillaris HOM05D005212 ORTHO05D006353 5.4e-06 56.2 31 74.2


User provided reference genes

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