Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv36237 Davidia involucrata HOM05D001245 ORTHO05D004900 1.4e-81 306.2 156 100.0
GSVIVG01025236001 Vitis vinifera HOM05D001245 ORTHO05D004900 3.2e-49 198.7 138 73.9
Lj2C626G1 Lonicera japonica HOM05D001245 ORTHO05D004900 1.9e-46 189.5 150 68.7
Gorai.006G127100 Gossypium raimondii HOM05D001245 ORTHO05D004900 2.9e-42 175.6 134 63.4
Gohir.A09G113000 Gossypium hirsutum HOM05D001245 ORTHO05D004900 6.5e-42 174.5 134 62.7
DCAR_002082 Daucus carota HOM05D001245 ORTHO05D004900 3.0e-39 165.6 138 65.9
Dinv22163 Davidia involucrata HOM05D001245 ORTHO05D004900 3.7e-37 158.7 105 81.9
Duzib168G0839 Durio zibethinus HOM05D001245 ORTHO05D004900 3.1e-36 155.6 115 65.2
Actinidia16343 Actinidia chinensis HOM05D001245 ORTHO05D004900 1.0e-34 150.6 99 80.8
Actinidia06921 Actinidia chinensis HOM05D001245 ORTHO05D004900 8.5e-34 147.5 95 81.1
CSS0024429 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004900 9.4e-33 144.1 95 81.1
vmacro04136 Vaccinium macrocarpon HOM05D001245 ORTHO05D004900 1.0e-31 140.6 97 76.3
Cc01_g04860 Coffea canephora HOM05D001245 ORTHO05D004900 6.7e-31 137.9 97 78.4
TAR633G0303 Trochodendron aralioides HOM05D001245 ORTHO05D004900 6.7e-31 137.9 92 81.5
Gohir.D09G109500 Gossypium hirsutum HOM05D001245 ORTHO05D004900 1.1e-30 137.1 134 53.0
DCAR_024415 Daucus carota HOM05D001245 ORTHO05D004900 1.4e-28 130.2 89 77.5
Lsat_1_v5_gn_1_77681 Lactuca sativa HOM05D001245 ORTHO05D004900 1.4e-28 130.2 95 71.6
Sc06g0004620 Simmondsia chinensis HOM05D001245 ORTHO05D004900 1.4e-28 130.2 113 68.1
Peaxi162Scf00032g00821 Petunia axillaris HOM05D001245 ORTHO05D004900 1.8e-28 129.8 103 68.0
CAN.G821.1 Capsicum annuum HOM05D001245 ORTHO05D004900 4.1e-28 128.6 110 66.4
Prupe.4G254100 Prunus persica HOM05D001245 ORTHO05D004900 6.9e-28 127.9 97 73.2
Atru.chr3.2671_Atru.chr3.2672 Acer truncatum HOM05D001245 ORTHO05D004900 9.1e-28 127.5 105 69.5
Migut.D00621 Erythranthe guttata HOM05D001245 ORTHO05D004900 9.1e-28 127.5 89 74.2
Sabra09G0037600 Salix brachista HOM05D001245 ORTHO05D004900 2.0e-27 126.3 92 75.0
ECA248G2887 Erigeron canadensis HOM05D001245 ORTHO05D004900 3.4e-27 125.6 92 75.0
TWI32G0811 Tripterygium wilfordii HOM05D001245 ORTHO05D004900 3.4e-27 125.6 88 73.9
Cpa.g.sc84.35 Carica papaya HOM05D001245 ORTHO05D004900 4.5e-27 125.2 92 76.1
FvH4_3g28510 Fragaria vesca HOM05D001245 ORTHO05D004900 5.9e-27 124.8 99 71.7
FAN11G1174 Fragaria x ananassa HOM05D001245 ORTHO05D004900 5.9e-27 124.8 99 71.7
HanXRQChr11g0343641 Helianthus annuus HOM05D001245 ORTHO05D004900 5.9e-27 124.8 118 59.3
Manes.06G162500 Manihot esculenta HOM05D001245 ORTHO05D004900 5.9e-27 124.8 92 73.9
PGSC0003DMG400010485 Solanum tuberosum HOM05D001245 ORTHO05D004900 5.9e-27 124.8 103 66.0
Solyc01g008560.3 Solanum lycopersicum HOM05D001245 ORTHO05D004900 1.0e-26 124.0 110 64.5
Sopen01g004100 Solanum pennellii HOM05D001245 ORTHO05D004900 1.0e-26 124.0 110 64.5
FAN21G1833 Fragaria x ananassa HOM05D001245 ORTHO05D004900 1.7e-26 123.2 99 70.7
FAN25G0433 Fragaria x ananassa HOM05D001245 ORTHO05D004900 1.7e-26 123.2 99 70.7
MD03G1172500 Malus domestica HOM05D001245 ORTHO05D004900 2.2e-26 122.9 86 75.6
TAR623G0953 Trochodendron aralioides HOM05D001245 ORTHO05D004900 2.9e-26 122.5 104 71.2
MSTRG.21365 Avicennia marina HOM05D001245 ORTHO05D004900 3.8e-26 122.1 92 71.7
Ciclev10014881m.g Citrus clementina HOM05D001245 ORTHO05D004900 3.8e-26 122.1 87 66.7
FAN16G0752 Fragaria x ananassa HOM05D001245 ORTHO05D004900 5.0e-26 121.7 99 69.7
RcHm_v2.0_Chr5g0052801 Rosa chinensis HOM05D001245 ORTHO05D004900 5.0e-26 121.7 100 70.0
CsaV3_1G042920 Cucumis sativus L. HOM05D001245 ORTHO05D004900 6.5e-26 121.3 97 68.0
Sc16g0011310 Simmondsia chinensis HOM05D001245 ORTHO05D004900 6.5e-26 121.3 100 72.0
HanXRQChr01g0023921 Helianthus annuus HOM05D001245 ORTHO05D004900 8.5e-26 120.9 92 68.5
TWI60G0980 Tripterygium wilfordii HOM05D001245 ORTHO05D004900 8.5e-26 120.9 92 71.7
MSTRG.12463 Avicennia marina HOM05D001245 ORTHO05D004900 1.1e-25 120.6 89 69.7
PGR119G2403 Punica granatum HOM05D001245 ORTHO05D004900 1.1e-25 120.6 100 69.0
Thecc.09G237500 Theobroma cacao HOM05D001245 ORTHO05D004900 1.1e-25 120.6 92 70.7
Gohir.A05G069800 Gossypium hirsutum HOM05D001245 ORTHO05D004900 1.4e-25 120.2 86 72.1
Gohir.D05G072700 Gossypium hirsutum HOM05D001245 ORTHO05D004900 1.4e-25 120.2 92 69.6
Manes.14G003900 Manihot esculenta HOM05D001245 ORTHO05D004900 1.4e-25 120.2 97 69.1
QL01p004208 Quercus lobata HOM05D001245 ORTHO05D004900 1.4e-25 120.2 110 70.0
COL.COLO4_05366 Corchorus olitorius HOM05D001245 ORTHO05D004900 2.5e-25 119.4 105 64.8
MELO3C015180.2 Cucumis melo HOM05D001245 ORTHO05D004900 3.2e-25 119.0 97 67.0
Sed0004060 Sechium edule HOM05D001245 ORTHO05D004900 4.2e-25 118.6 97 64.9
TPR.G13758 Trifolium pratense HOM05D001245 ORTHO05D004900 4.2e-25 118.6 99 73.7
Glyma.12G020100 Glycine max HOM05D001245 ORTHO05D004900 5.5e-25 118.2 95 74.7
Potri.009G051500 Populus trichocarpa HOM05D001245 ORTHO05D004900 5.5e-25 118.2 100 67.0
Hund22008 Selenicereus undatus HOM05D001245 ORTHO05D004900 5.5e-25 118.2 106 68.9
unitig_0.g293 Utricularia gibba HOM05D001245 ORTHO05D004900 5.5e-25 118.2 89 66.3
Potri.001G256100 Populus trichocarpa HOM05D001245 ORTHO05D004900 7.2e-25 117.9 100 66.0
Ca_18972_v3 Cicer arietinum L. HOM05D001245 ORTHO05D004900 1.2e-24 117.1 97 72.2
Phvul.011G022700 Phaseolus vulgaris HOM05D001245 ORTHO05D004900 1.2e-24 117.1 105 67.6
ClCG03G013120 Citrullus lanatus HOM05D001245 ORTHO05D004900 1.6e-24 116.7 97 64.9
Duzib170G0912 Durio zibethinus HOM05D001245 ORTHO05D004900 1.6e-24 116.7 86 70.9
Glyma.11G093600 Glycine max HOM05D001245 ORTHO05D004900 2.7e-24 115.9 95 73.7
arahy.Tifrunner.gnm1.ann1.J55WMV Arachis hypogaea HOM05D001245 ORTHO05D004900 3.6e-24 115.5 91 74.7
Gorai.009G073700 Gossypium raimondii HOM05D001245 ORTHO05D004900 3.6e-24 115.5 92 67.4
Nitab4.5_0009763g0010 Nicotiana tabacum HOM05D001245 ORTHO05D004900 3.6e-24 115.5 90 71.1
SGA_v2.0_scaffold1G00741 Striga asiatica HOM05D001245 ORTHO05D004900 3.6e-24 115.5 91 68.1
Haze_23162 Corylus avellana HOM05D001245 ORTHO05D004900 4.7e-24 115.2 98 69.4
SGA_v2.0_scaffold29G12323 Striga asiatica HOM05D001245 ORTHO05D004900 4.7e-24 115.2 91 68.1
VMungo1127G1052 Vigna mungo HOM05D001245 ORTHO05D004900 4.7e-24 115.2 91 71.4
arahy.Tifrunner.gnm1.ann1.9YG71W Arachis hypogaea HOM05D001245 ORTHO05D004900 6.1e-24 114.8 91 73.6
Thhalv10020469m.g Eutrema salsugineum HOM05D001245 ORTHO05D004900 6.1e-24 114.8 103 65.0
Aa31LG8G7790 Aethionema arabicum HOM05D001245 ORTHO05D004900 1.0e-23 114.0 95 68.4
CANSAT54G0430 Cannabis sativa HOM05D001245 ORTHO05D004900 1.0e-23 114.0 96 69.8
Medtr4g076990 Medicago truncatula HOM05D001245 ORTHO05D004900 1.0e-23 114.0 96 72.9
Psat7g172200 Pisum sativum HOM05D001245 ORTHO05D004900 1.0e-23 114.0 94 71.3
EL10Ac4g10216 Beta vulgaris HOM05D001245 ORTHO05D004900 1.4e-23 113.6 91 74.7
EL10Ac4g10221 Beta vulgaris HOM05D001245 ORTHO05D004900 1.4e-23 113.6 91 74.7
PSO339G0578 Papaver somniferum HOM05D001245 ORTHO05D004900 1.4e-23 113.6 88 68.2
Thhalv10009421m.g Eutrema salsugineum HOM05D001245 ORTHO05D004900 1.8e-23 113.2 103 65.0
Lj3g0006919 Lotus japonicus HOM05D001245 ORTHO05D004900 1.8e-23 113.2 90 71.1
BcaC05g28218 Brassica carinata HOM05D001245 ORTHO05D004900 2.3e-23 112.8 93 69.9
C05p43020 Brassica napus HOM05D001245 ORTHO05D004900 2.3e-23 112.8 93 69.9
BolC5t33033H Brassica oleracea HOM05D001245 ORTHO05D004900 2.3e-23 112.8 93 69.9
CiPaw.14G117400 Carya illinoinensis HOM05D001245 ORTHO05D004900 2.3e-23 112.8 100 70.0
PSO384G2906 Papaver somniferum HOM05D001245 ORTHO05D004900 2.3e-23 112.8 88 68.2
Nitab4.5_0001747g0010 Nicotiana tabacum HOM05D001245 ORTHO05D004900 3.0e-23 112.5 82 74.4
Aqoxy2G00231 Aquilegia oxysepala HOM05D001245 ORTHO05D004900 6.7e-23 111.3 99 63.6
Cfa009791 Carpinus fangiana HOM05D001245 ORTHO05D004900 8.8e-23 110.9 98 67.3
Lalb_Chr19g0139801 Lupinus albus HOM05D001245 ORTHO05D004900 8.8e-23 110.9 90 70.0
Sabra16G0156300 Salix brachista HOM05D001245 ORTHO05D004900 1.5e-22 110.2 111 59.5
Hund07492 Selenicereus undatus HOM05D001245 ORTHO05D004900 1.5e-22 110.2 99 65.7
BcaB04g19134 Brassica carinata HOM05D001245 ORTHO05D004900 2.0e-22 109.8 99 65.7
MD11G1190400 Malus domestica HOM05D001245 ORTHO05D004900 2.0e-22 109.8 96 68.8
MBI17_g18830_MAGBIO Magnolia biondii HOM05D001245 ORTHO05D004900 2.6e-22 109.4 98 61.2
Ah.06g193940 Amaranthus hybridus HOM05D001245 ORTHO05D004900 3.3e-22 109.0 92 67.4
AL3G35020 Arabidopsis lyrata HOM05D001245 ORTHO05D004900 3.3e-22 109.0 101 64.4
A05p27650 Brassica napus HOM05D001245 ORTHO05D004900 3.3e-22 109.0 99 64.6
BraA05t21658Z Brassica rapa HOM05D001245 ORTHO05D004900 3.3e-22 109.0 99 64.6
Sp3g19030 Schrenkiella parvula HOM05D001245 ORTHO05D004900 4.4e-22 108.6 101 65.3
AT3G21070 Arabidopsis thaliana HOM05D001245 ORTHO05D004900 9.7e-22 107.5 115 56.5
THA.LOC104817912 Tarenaya hassleriana HOM05D001245 ORTHO05D004900 9.7e-22 107.5 97 62.9
Eucgr.J00748 Eucalyptus grandis HOM05D001245 ORTHO05D004900 1.7e-21 106.7 92 64.1
CDE02G0159 Ceratophyllum demersum HOM05D001245 ORTHO05D004900 2.2e-21 106.3 94 66.0
A01p33780 Brassica napus HOM05D001245 ORTHO05D004900 2.8e-21 105.9 112 60.7
C01p43200 Brassica napus HOM05D001245 ORTHO05D004900 3.7e-21 105.5 112 60.7
BcaB06g26174 Brassica carinata HOM05D001245 ORTHO05D004900 4.8e-21 105.1 88 68.2
BolC1t04266H Brassica oleracea HOM05D001245 ORTHO05D004900 4.8e-21 105.1 112 60.7
BraA01t03489Z Brassica rapa HOM05D001245 ORTHO05D004900 4.8e-21 105.1 112 60.7
Migut.N02339 Erythranthe guttata HOM05D001245 ORTHO05D004900 8.2e-21 104.4 97 60.8
BcaC09g49046 Brassica carinata HOM05D001245 ORTHO05D004900 1.1e-20 104.0 112 58.9
BcaB04g20614 Brassica carinata HOM05D001245 ORTHO05D004900 5.3e-20 101.7 111 59.5
SHI29795 Sapria himalayana HOM05D001245 ORTHO05D004900 7.0e-20 101.3 87 64.4
A03p42010 Brassica napus HOM05D001245 ORTHO05D004900 1.2e-19 100.5 97 63.9
BraA03t13355Z Brassica rapa HOM05D001245 ORTHO05D004900 2.0e-19 99.8 115 59.1
Carub.0003s2097 Capsella rubella HOM05D001245 ORTHO05D004900 2.0e-19 99.8 115 57.4
Nn2g15212 Nelumbo nucifera HOM05D001245 ORTHO05D004900 2.0e-19 99.8 90 61.1
AUR62000145 Chenopodium quinoa HOM05D001245 ORTHO05D004900 2.6e-19 99.4 90 62.2
CDE06G1045 Ceratophyllum demersum HOM05D001245 ORTHO05D004900 3.5e-19 99.0 89 62.9
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 1.3e-18 97.1 93 63.4
BolC3t17428H Brassica oleracea HOM05D001245 ORTHO05D004900 2.2e-18 96.3 104 58.7
C03p51430 Brassica napus HOM05D001245 ORTHO05D004900 6.5e-18 94.7 93 62.4
CARHR096910 Cardamine hirsuta HOM05D001245 ORTHO05D004900 1.1e-17 94.0 108 55.6
Zm00001eb140570 Zea mays HOM05D001245 ORTHO05D004900 1.9e-17 93.2 79 63.3
Zm00001eb362660 Zea mays HOM05D001245 ORTHO05D004900 2.5e-17 92.8 86 62.8
AUR62019326 Chenopodium quinoa HOM05D001245 ORTHO05D004900 5.5e-17 91.7 77 63.6
Os01g0957000 Oryza sativa ssp. japonica HOM05D001245 ORTHO05D004900 3.9e-15 85.5 98 55.1
Lsat_1_v5_gn_8_29581 Lactuca sativa HOM05D015688 ORTHO05D025746 1.1e-14 84.0 90 57.8
ATR0730G209 Amborella trichopoda HOM05D001245 ORTHO05D004900 2.6e-14 82.8 92 50.0
CiPaw.13G156400 Carya illinoinensis HOM05D001245 ORTHO05D004900 5.7e-14 81.6 70 70.0
CiPaw.13G157600 Carya illinoinensis HOM05D001245 ORTHO05D004900 7.4e-14 81.3 71 69.0
SEGI_37379 Sequoiadendron giganteum HOM05D001245 ORTHO05D004900 7.4e-14 81.3 99 49.5
HanXRQChr14g0432931 Helianthus annuus HOM05D001245 ORTHO05D004900 1.7e-13 80.1 89 53.9
CiPaw.13G157300 Carya illinoinensis HOM05D001245 ORTHO05D004900 2.2e-13 79.7 71 69.0
Os05g0388400 Oryza sativa ssp. japonica HOM05D001245 ORTHO05D004900 2.2e-13 79.7 65 64.6
Lalb_Chr03g0024471 Lupinus albus HOM05D001245 ORTHO05D004900 7.0e-12 74.7 80 56.2
Pp3c25_12850 Physcomitrium patens HOM05D001245 ORTHO05D004900 1.6e-11 73.6 104 43.3
Pp3c6_3660 Physcomitrium patens HOM05D001245 ORTHO05D004900 2.0e-11 73.2 103 46.6
Mapoly0052s0071 Marchantia polymorpha HOM05D001245 ORTHO05D004900 5.9e-11 71.6 70 54.3
Sabra09G0037800 Salix brachista HOM05D001245 ORTHO05D004900 6.5e-10 68.2 48 60.4
Lsat_1_v5_gn_2_30041 Lactuca sativa HOM05D001245 ORTHO05D004900 3.2e-09 65.9 101 43.6
Pp3c10_23020 Physcomitrium patens HOM05D001245 ORTHO05D004900 9.4e-09 64.3 94 43.6
MBI04_g34097_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 3.3e-06 55.8 51 37.3


User provided reference genes

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