Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv36213 Davidia involucrata HOM05D006549 ORTHO05D008080 8.2e-186 653.7 351 100.0
Dinv22152 Davidia involucrata HOM05D006549 ORTHO05D008080 4.2e-142 508.4 380 73.2
Actinidia06932 Actinidia chinensis HOM05D006549 ORTHO05D008080 4.4e-131 471.9 392 66.3
Actinidia16353 Actinidia chinensis HOM05D006549 ORTHO05D008080 4.9e-130 468.4 383 67.6
CSS0047891 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 4.1e-121 438.7 371 64.4
CiPaw.13G153800 Carya illinoinensis HOM05D006549 ORTHO05D008080 7.1e-121 438.0 384 62.2
GSVIVG01031548001 Vitis vinifera HOM05D006549 ORTHO05D008080 6.6e-119 431.4 399 60.7
Duzib170G0947 Durio zibethinus HOM05D006549 ORTHO05D008080 1.2e-117 427.2 388 61.9
Cc01_g06100 Coffea canephora HOM05D006549 ORTHO05D008080 6.2e-117 424.9 373 61.1
Manes.14G005500 Manihot esculenta HOM05D006549 ORTHO05D008080 6.2e-117 424.9 400 59.2
Nn7g36445 Nelumbo nucifera HOM05D006549 ORTHO05D008080 1.1e-116 424.1 389 63.5
FvH4_3g28330 Fragaria vesca HOM05D006549 ORTHO05D008080 2.3e-116 422.9 398 59.8
FAN11G3700 Fragaria x ananassa HOM05D006549 ORTHO05D008080 3.1e-116 422.5 398 59.8
Gohir.A09G111700 Gossypium hirsutum HOM05D006549 ORTHO05D008080 6.8e-116 421.4 387 61.2
vmacro04120 Vaccinium macrocarpon HOM05D006549 ORTHO05D008080 8.9e-116 421.0 354 65.0
Gorai.006G126000 Gossypium raimondii HOM05D006549 ORTHO05D008080 1.5e-115 420.2 387 61.2
Gohir.D09G108300 Gossypium hirsutum HOM05D006549 ORTHO05D008080 2.0e-115 419.9 387 61.0
MSTRG.17620 Avicennia marina HOM05D006549 ORTHO05D008080 2.6e-115 419.5 390 60.3
Thecc.09G240800 Theobroma cacao HOM05D006549 ORTHO05D008080 4.4e-115 418.7 387 60.7
FAN21G3651 Fragaria x ananassa HOM05D006549 ORTHO05D008080 1.4e-113 413.7 403 59.3
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 1.9e-113 413.3 375 61.9
Potri.001G254600 Populus trichocarpa HOM05D006549 ORTHO05D008080 2.4e-113 412.9 383 61.4
Ciclev10015584m.g Citrus clementina HOM05D006549 ORTHO05D008080 1.6e-112 410.2 379 61.7
Oeu025891.1 Olea europaea HOM05D006549 ORTHO05D008080 3.5e-112 409.1 399 56.6
Nitab4.5_0006878g0020 Nicotiana tabacum HOM05D006549 ORTHO05D008080 4.6e-112 408.7 390 57.7
Potri.009G049700 Populus trichocarpa HOM05D006549 ORTHO05D008080 7.8e-112 407.9 382 60.7
PGR102G0709 Punica granatum HOM05D006549 ORTHO05D008080 7.8e-112 407.9 393 57.8
CANSAT54G0570 Cannabis sativa HOM05D006549 ORTHO05D008080 1.7e-111 406.8 385 61.0
MD03G1170300 Malus domestica HOM05D006549 ORTHO05D008080 5.1e-111 405.2 410 57.6
RcHm_v2.0_Chr5g0051211 Rosa chinensis HOM05D006549 ORTHO05D008080 1.9e-110 403.3 399 61.7
MD11G1187800 Malus domestica HOM05D006549 ORTHO05D008080 2.5e-110 402.9 398 60.3
TWI39G1226 Tripterygium wilfordii HOM05D006549 ORTHO05D008080 4.3e-110 402.1 386 58.5
CAN.G633.4 Capsicum annuum HOM05D006549 ORTHO05D008080 6.2e-109 398.3 389 55.5
Sc09g0000890 Simmondsia chinensis HOM05D006549 ORTHO05D008080 2.4e-108 396.4 388 59.5
Aqoxy1G00310 Aquilegia oxysepala HOM05D006549 ORTHO05D008080 1.5e-107 393.7 371 61.5
COL.COLO4_36476 Corchorus olitorius HOM05D006549 ORTHO05D008080 9.9e-107 391.0 387 59.2
Atru.chr3.2633 Acer truncatum HOM05D006549 ORTHO05D008080 1.7e-106 390.2 365 59.2
Migut.N02355 Erythranthe guttata HOM05D006549 ORTHO05D008080 2.2e-106 389.8 377 57.3
Nitab4.5_0002726g0080 Nicotiana tabacum HOM05D006549 ORTHO05D008080 6.4e-106 388.3 390 55.1
Haze_23190 Corylus avellana HOM05D006549 ORTHO05D008080 8.4e-106 387.9 450 51.8
Prupe.4G256800 Prunus persica HOM05D006549 ORTHO05D008080 8.4e-106 387.9 468 51.7
Glyma.11G015900 Glycine max HOM05D006549 ORTHO05D008080 1.9e-105 386.7 373 56.8
Lsat_1_v5_gn_2_29261 Lactuca sativa HOM05D006549 ORTHO05D008080 3.2e-105 386.0 366 58.7
DCAR_000660 Daucus carota HOM05D006549 ORTHO05D008080 4.2e-105 385.6 423 53.7
Glyma.01G226800 Glycine max HOM05D006549 ORTHO05D008080 7.1e-105 384.8 377 57.0
ECA238G1745 Erigeron canadensis HOM05D006549 ORTHO05D008080 9.3e-105 384.4 350 60.9
Peaxi162Scf00004g03918 Petunia axillaris HOM05D006549 ORTHO05D008080 1.6e-104 383.6 348 57.8
THA.LOC104811185 Tarenaya hassleriana HOM05D006549 ORTHO05D008080 2.1e-104 383.3 391 56.3
Eucgr.B03712 Eucalyptus grandis HOM05D006549 ORTHO05D008080 4.6e-104 382.1 376 57.4
arahy.Tifrunner.gnm1.ann1.2W4GIE Arachis hypogaea HOM05D006549 ORTHO05D008080 7.8e-104 381.3 366 57.9
Sabra09G0036200 Salix brachista HOM05D006549 ORTHO05D008080 2.3e-103 379.8 438 51.8
PGSC0003DMG400031244 Solanum tuberosum HOM05D006549 ORTHO05D008080 2.3e-103 379.8 386 53.9
Solyc11g065180.2 Solanum lycopersicum HOM05D006549 ORTHO05D008080 3.9e-103 379.0 388 54.4
Sopen11g024900 Solanum pennellii HOM05D006549 ORTHO05D008080 1.5e-102 377.1 388 53.6
HanXRQChr14g0433001 Helianthus annuus HOM05D006549 ORTHO05D008080 2.5e-102 376.3 332 59.9
Sabra16G0155200 Salix brachista HOM05D006549 ORTHO05D008080 3.3e-102 375.9 447 51.5
VMungo1215G3210 Vigna mungo HOM05D006549 ORTHO05D008080 4.3e-102 375.6 393 53.7
ClCG03G013060 Citrullus lanatus HOM05D006549 ORTHO05D008080 5.6e-102 375.2 393 56.2
CsaV3_1G043000 Cucumis sativus L. HOM05D006549 ORTHO05D008080 3.6e-101 372.5 397 56.2
Medtr5g009010 Medicago truncatula HOM05D006549 ORTHO05D008080 3.6e-101 372.5 369 54.2
unitig_27.g25003 Utricularia gibba HOM05D006549 ORTHO05D008080 6.2e-101 371.7 366 56.0
Phvul.002G033900 Phaseolus vulgaris HOM05D006549 ORTHO05D008080 1.4e-100 370.5 385 54.0
arahy.Tifrunner.gnm1.ann1.9560XR Arachis hypogaea HOM05D006549 ORTHO05D008080 1.5e-99 367.1 365 56.2
CARHR200690 Cardamine hirsuta HOM05D006549 ORTHO05D008080 1.5e-99 367.1 365 56.2
QL01p018141 Quercus lobata HOM05D006549 ORTHO05D008080 2.0e-99 366.7 401 54.6
TPR.G38023 Trifolium pratense HOM05D006549 ORTHO05D008080 2.0e-99 366.7 373 54.2
AUR62000165 Chenopodium quinoa HOM05D006549 ORTHO05D008080 3.4e-99 365.9 377 55.7
BraA03t09898Z Brassica rapa HOM05D006549 ORTHO05D008080 1.3e-98 364.0 365 57.0
EL10Ac4g10185 Beta vulgaris HOM05D006549 ORTHO05D008080 2.2e-98 363.2 385 54.8
BolC3t13156H Brassica oleracea HOM05D006549 ORTHO05D008080 2.2e-98 363.2 380 53.4
Lju41A40T23 Lonicera japonica HOM05D006549 ORTHO05D008080 2.2e-98 363.2 320 61.6
ATR0721G160 Amborella trichopoda HOM05D006549 ORTHO05D008080 3.8e-98 362.5 356 53.7
AUR62039846 Chenopodium quinoa HOM05D006549 ORTHO05D008080 3.8e-98 362.5 380 55.0
Sed0027042 Sechium edule HOM05D006549 ORTHO05D008080 4.9e-98 362.1 395 54.4
BolC9t59282H Brassica oleracea HOM05D006549 ORTHO05D008080 8.4e-98 361.3 364 54.9
Lalb_Chr09g0320561 Lupinus albus HOM05D006549 ORTHO05D008080 1.1e-97 360.9 390 50.5
MBI13_g04769_MAGBIO Magnolia biondii HOM05D006549 ORTHO05D008080 1.4e-97 360.5 415 54.7
Aa31LG3G14820 Aethionema arabicum HOM05D006549 ORTHO05D008080 2.4e-97 359.8 377 57.0
SGA_v2.0_scaffold42G16082 Striga asiatica HOM05D006549 ORTHO05D008080 2.4e-97 359.8 375 57.1
C09p64480 Brassica napus HOM05D006549 ORTHO05D008080 3.2e-97 359.4 381 53.5
BraA10t44605Z Brassica rapa HOM05D006549 ORTHO05D008080 2.1e-96 356.7 367 56.4
Psat2g186960 Pisum sativum HOM05D000745 ORTHO05D000641 3.5e-96 355.9 364 51.9
AL6G23210 Arabidopsis lyrata HOM05D006549 ORTHO05D008080 4.6e-96 355.5 369 53.1
PSO384G3463 Papaver somniferum HOM05D006549 ORTHO05D008080 7.8e-96 354.8 377 57.8
PSO339G6663 Papaver somniferum HOM05D006549 ORTHO05D008080 2.3e-95 353.2 385 58.2
Hund07453 Selenicereus undatus HOM05D006549 ORTHO05D008080 3.0e-95 352.8 374 58.3
A10p25410 Brassica napus HOM05D006549 ORTHO05D008080 8.7e-95 351.3 375 51.5
Carub.0006s1091 Capsella rubella HOM05D006549 ORTHO05D008080 1.5e-94 350.5 372 53.5
AT5G12410 Arabidopsis thaliana HOM05D006549 ORTHO05D008080 4.3e-94 349.0 372 53.8
Sp6g31230 Schrenkiella parvula HOM05D006549 ORTHO05D008080 2.1e-93 346.7 386 51.6
A03p05610 Brassica napus HOM05D006549 ORTHO05D008080 2.8e-93 346.3 344 55.8
CDE08G0181 Ceratophyllum demersum HOM05D006549 ORTHO05D008080 2.4e-92 343.2 344 54.7
Os11g0568600 Oryza sativa ssp. japonica HOM05D006549 ORTHO05D008080 5.3e-92 342.0 355 52.1
Ca_24492_v3 Cicer arietinum L. HOM05D000745 ORTHO05D000641 8.4e-90 334.7 355 52.1
Thhalv10013724m.g Eutrema salsugineum HOM05D006549 ORTHO05D008080 8.4e-90 334.7 398 52.3
C03p06560 Brassica napus HOM05D006549 ORTHO05D008080 1.1e-89 334.3 338 59.8
Zm00001eb200070 Zea mays HOM05D006549 ORTHO05D008080 2.1e-88 330.1 396 51.5
QL01p018092 Quercus lobata HOM05D006549 ORTHO05D008080 7.9e-88 328.2 209 77.0
Oeu061298.1 Olea europaea HOM05D006549 ORTHO05D008080 6.7e-87 325.1 268 64.2
LjContig00222g0000121 Lotus japonicus HOM05D006549 ORTHO05D008080 6.9e-84 315.1 470 42.6
BcaB01g05403 Brassica carinata HOM05D006549 ORTHO05D008080 6.5e-82 308.5 416 48.6
SEGI_14205 Sequoiadendron giganteum HOM05D006549 ORTHO05D008080 2.1e-77 293.5 359 48.5
Ah.06g193800 Amaranthus hybridus HOM05D006549 ORTHO05D008080 4.8e-77 292.4 361 47.6
BcaB08g37001 Brassica carinata HOM05D006549 ORTHO05D008080 3.2e-73 279.6 343 52.8
FAN16G0297 Fragaria x ananassa HOM05D006549 ORTHO05D008080 5.1e-71 272.3 166 80.7
TAR633G0410 Trochodendron aralioides HOM05D006549 ORTHO05D008080 1.9e-65 253.8 145 84.8
Hma1.2p1_1043F.1_g251200 Hydrangea macrophylla HOM05D006549 ORTHO05D008080 1.7e-61 240.7 135 85.2
AagrBONN_evm.TU.Sc2ySwM_228.1610 Anthoceros agrestis HOM05D006549 ORTHO05D008080 9.4e-57 224.9 333 38.4
Duzib168G0228 Durio zibethinus HOM05D006549 ORTHO05D008080 2.3e-55 220.3 243 52.7
SMO013G0006 Selaginella moellendorffii HOM05D006549 ORTHO05D008080 1.1e-54 218.0 332 38.3
SHI46597 Sapria himalayana HOM05D006549 ORTHO05D008080 9.1e-52 208.4 237 48.1
Mapoly0091s0083 Marchantia polymorpha HOM05D006549 ORTHO05D008080 2.9e-50 203.4 379 39.8
Pp3c3_2270 Physcomitrium patens HOM05D006549 ORTHO05D008080 5.7e-46 189.1 332 40.7
Cc01_g06170 Coffea canephora HOM05D006549 ORTHO05D008080 1.6e-43 181.0 112 78.6
CBR_g300 Chara braunii HOM05D006549 ORTHO05D008080 4.0e-31 139.8 228 34.6
HPP92_011577 Vanilla planifolia HOM05D006549 ORTHO05D008080 5.0e-26 122.9 197 41.1
PRCOL_00001563 Prasinoderma coloniale HOM05D006549 ORTHO05D008080 3.3e-25 120.2 179 38.5
MELO3C029487.2 Cucumis melo HOM05D006549 ORTHO05D008080 2.0e-22 110.9 64 81.2
Cpa.g.sc84.3 Carica papaya HOM05D006549 ORTHO05D008080 2.2e-21 107.5 58 87.9
MCO09G159 Micromonas commoda HOM05D006549 ORTHO05D008080 2.2e-21 107.5 193 33.2
MELO3C015170.2 Cucumis melo HOM05D006549 ORTHO05D008080 7.8e-19 99.0 80 63.8
BolC3t13160H Brassica oleracea HOM05D006549 ORTHO05D008080 5.0e-18 96.3 65 69.2
Cre14.g629550 Chlamydomonas reinhardtii HOM05D006549 ORTHO05D008080 1.9e-17 94.4 171 33.9
CSS0036252 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 7.3e-17 92.4 64 70.3
Cpa.g.c41750 Carica papaya HOM05D006549 ORTHO05D008080 1.2e-14 85.1 56 71.4


User provided reference genes

Program Settings