Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1949.5 965 100.0
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1692.2 967 85.9
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1449.5 958 75.8
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1406.7 945 75.0
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1380.9 937 74.9
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1367.8 974 70.9
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1364.0 942 72.1
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1364.0 975 70.4
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1347.0 975 70.2
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1340.5 987 69.9
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1331.6 984 69.1
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1328.5 941 71.4
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1306.6 940 70.0
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1304.7 939 70.2
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1285.4 972 66.8
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1284.2 996 66.3
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1282.3 928 70.9
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1281.9 935 69.3
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1261.9 980 65.8
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1253.0 972 66.3
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1249.6 978 65.6
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1249.2 972 65.5
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1248.8 942 67.5
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1248.4 941 66.6
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1245.0 972 66.6
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1244.2 926 68.3
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1243.8 988 66.1
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1243.8 938 68.2
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1243.4 972 66.6
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1242.3 941 66.3
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1242.3 941 68.2
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1238.8 942 66.6
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 0.0e+00 1237.6 937 67.7
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1236.1 931 67.7
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 0.0e+00 1236.1 1071 61.9
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1235.7 973 65.4
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1232.6 931 67.0
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1232.2 982 64.7
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 0.0e+00 1229.2 943 67.4
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1229.2 932 67.4
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1228.8 989 65.0
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1228.8 973 65.2
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1225.7 1005 63.2
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1225.3 940 67.1
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1221.8 933 67.3
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1220.3 942 66.5
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 0.0e+00 1219.5 978 64.6
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 0.0e+00 1216.8 1009 63.9
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 0.0e+00 1216.1 975 63.9
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1205.7 1007 62.4
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 0.0e+00 1204.5 943 65.1
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 0.0e+00 1204.5 962 65.1
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1204.1 989 62.9
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 0.0e+00 1204.1 949 64.8
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1203.0 1007 62.3
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1203.0 1007 62.3
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 0.0e+00 1201.4 1056 60.5
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1200.7 953 65.7
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1198.0 1020 61.8
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1192.9 931 67.0
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1192.6 946 65.4
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1188.7 925 65.2
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 0.0e+00 1187.6 950 64.7
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 0.0e+00 1184.1 934 64.5
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1181.8 989 62.0
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 0.0e+00 1176.0 927 63.8
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 0.0e+00 1158.7 951 62.4
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1157.9 1047 59.8
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 0.0e+00 1157.5 950 63.8
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 0.0e+00 1156.0 941 64.2
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 0.0e+00 1155.6 949 62.4
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 0.0e+00 1154.0 956 61.9
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1152.9 944 62.7
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 0.0e+00 1152.1 961 62.0
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 0.0e+00 1151.3 952 62.7
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 0.0e+00 1148.7 968 62.2
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1148.7 904 66.4
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 0.0e+00 1147.9 970 61.6
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1147.9 960 61.4
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 0.0e+00 1142.9 957 61.8
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1142.9 945 62.6
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1142.5 955 62.9
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1137.9 945 62.4
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1137.9 945 62.4
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1137.5 953 61.5
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1136.7 824 69.8
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1136.7 952 61.8
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1134.8 943 61.6
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1134.8 943 61.6
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1132.9 944 62.1
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 0.0e+00 1132.5 974 60.1
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 0.0e+00 1129.4 871 66.5
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1128.2 954 61.4
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1123.6 936 60.8
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1119.4 1095 56.2
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 0.0e+00 1119.0 937 60.5
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1105.5 925 63.4
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1098.2 941 61.4
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 0.0e+00 1094.0 935 61.0
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 0.0e+00 1093.6 856 65.1
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1090.1 960 59.9
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1085.9 940 60.5
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 0.0e+00 1078.9 868 64.1
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 1.2e-308 1063.1 972 59.3
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 2.3e-307 1058.9 970 58.8
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 1.2e-303 1046.6 951 58.0
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 1.7e-302 1042.7 826 64.9
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 7.2e-301 1037.3 1000 55.2
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 1.5e-298 1029.6 983 56.2
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 4.4e-298 1028.1 1210 50.7
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.2e-295 1020.0 1063 53.4
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 3.3e-269 932.2 928 54.6
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 7.3e-269 931.0 782 61.9
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 1.2e-268 930.2 954 54.5
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 3.4e-258 895.6 723 65.4
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 1.4e-256 890.2 767 59.8
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 2.2e-249 866.3 985 47.7
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 2.8e-244 849.4 878 50.6
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 2.4e-243 846.3 721 61.7
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 6.9e-243 844.7 857 52.5
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 7.1e-240 834.7 1069 43.6
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 1.3e-222 777.3 758 57.5
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 2.3e-206 723.4 648 59.1
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 1.9e-200 703.7 633 59.6
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 2.6e-194 683.3 677 56.7
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 7.7e-194 681.8 411 80.5
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.8e-174 617.5 714 51.4
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 5.4e-171 605.9 364 81.6
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 3.5e-170 603.2 424 73.6
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 5.0e-169 599.4 405 75.3
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 7.3e-168 595.5 621 54.8
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 4.1e-155 553.1 518 59.8
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 1.3e-132 478.4 289 79.2
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 9.6e-128 462.2 572 48.4
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 3.6e-127 460.3 298 73.2
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 7.1e-123 446.0 299 71.9
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 2.1e-119 434.5 484 50.2
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 2.5e-115 421.0 317 65.0
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 6.3e-103 379.8 326 57.7
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 6.3e-95 353.2 240 73.8
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.7e-61 241.5 279 51.6
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 5.6e-59 233.8 139 80.6
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 3.7e-55 221.1 157 70.1
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 3.5e-53 214.5 212 51.9
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 4.1e-46 191.0 134 68.7
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 2.0e-45 188.7 150 62.7
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 8.3e-39 166.8 151 57.0
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 9.2e-30 136.7 115 60.9
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 2.7e-29 135.2 110 64.5
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.3e-28 132.9 76 82.9
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.2e-26 126.3 85 68.2
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 1.3e-18 99.8 66 71.2
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 1.5e-16 92.8 160 36.9
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 1.2e-13 83.2 61 62.3
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 1.2e-13 83.2 283 29.7
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 1.8e-12 79.3 47 76.6
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 1.5e-11 76.3 82 51.2
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 9.6e-11 73.6 66 47.0
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 4.8e-10 71.2 68 51.5
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 8.1e-10 70.5 50 68.0
CDE08G1083 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 2.4e-09 68.9 71 50.7
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 5.8e-08 64.3 53 56.6
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 5.8e-08 64.3 53 56.6
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 9.9e-08 63.5 62 51.6
BcaC05g27051 Brassica carinata HOM05D004101 ORTHO05D027158 2.2e-07 62.4 144 31.9
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 6.4e-07 60.8 53 54.7
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 2.4e-06 58.9 33 72.7
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 7.1e-06 57.4 52 55.8


User provided reference genes

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