Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv36157 Davidia involucrata HOM05D006179 ORTHO05D008370 1.4e-125 453.0 232 100.0
QL01p016926 Quercus lobata HOM05D006179 ORTHO05D008370 6.6e-83 311.2 222 73.9
Cfa009884 Carpinus fangiana HOM05D006179 ORTHO05D008370 1.6e-81 306.6 223 73.5
GSVIVG01037292001 Vitis vinifera HOM05D006179 ORTHO05D008370 2.8e-81 305.8 222 71.6
CiPaw.14G111900 Carya illinoinensis HOM05D006179 ORTHO05D008370 1.4e-80 303.5 223 73.1
Rhsim01G0195300 Rhododendron simsii HOM05D006179 ORTHO05D008370 4.0e-80 302.0 221 72.4
Prupe.4G263800 Prunus persica HOM05D006179 ORTHO05D008370 1.7e-78 296.6 223 73.5
CSS0020940 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 7.0e-77 291.2 231 71.4
Atru.chr3.2952 Acer truncatum HOM05D006179 ORTHO05D008370 9.2e-77 290.8 224 69.6
TAR623G0610 Trochodendron aralioides HOM05D006179 ORTHO05D008370 1.6e-76 290.0 223 69.5
Haze_23248 Corylus avellana HOM05D006179 ORTHO05D008370 4.6e-76 288.5 277 59.6
Atru.chr3.2957 Acer truncatum HOM05D006179 ORTHO05D008370 6.0e-76 288.1 224 69.2
Potri.009G069300 Populus trichocarpa HOM05D006179 ORTHO05D008370 7.8e-76 287.7 224 71.0
vmacro14276 Vaccinium macrocarpon HOM05D006179 ORTHO05D008370 7.8e-76 287.7 231 69.3
Thecc.09G246900 Theobroma cacao HOM05D006179 ORTHO05D008370 1.0e-75 287.3 223 65.5
COL.COLO4_24491 Corchorus olitorius HOM05D006179 ORTHO05D008370 4.3e-74 282.0 224 64.3
Manes.02G138400 Manihot esculenta HOM05D006179 ORTHO05D008370 1.6e-73 280.0 222 70.3
Sabra09G0052200 Salix brachista HOM05D006179 ORTHO05D008370 2.8e-73 279.3 223 68.6
PGR119G2402 Punica granatum HOM05D006179 ORTHO05D008370 5.2e-72 275.0 231 68.4
Hma1.2p1_0470F.1_g159226 Hydrangea macrophylla HOM05D006179 ORTHO05D008370 5.8e-71 271.6 239 67.8
CANSAT54G1770 Cannabis sativa HOM05D006179 ORTHO05D008370 9.9e-71 270.8 224 65.6
Duzib170G0239 Durio zibethinus HOM05D006179 ORTHO05D008370 6.4e-70 268.1 223 64.1
Lj2C622G16 Lonicera japonica HOM05D006179 ORTHO05D008370 8.3e-70 267.7 223 66.8
RcHm_v2.0_Chr5g0050451 Rosa chinensis HOM05D006179 ORTHO05D008370 3.2e-69 265.8 223 66.8
Lsat_1_v5_gn_5_65341 Lactuca sativa HOM05D006179 ORTHO05D008370 1.6e-68 263.5 226 64.2
MD11G1184200 Malus domestica HOM05D006179 ORTHO05D008370 4.6e-68 261.9 226 66.8
Sed0005347 Sechium edule HOM05D006179 ORTHO05D008370 7.8e-68 261.2 224 65.6
LjContig00564g0004002 Lotus japonicus HOM05D006179 ORTHO05D008370 3.9e-67 258.8 226 62.4
TWI79G0794 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 1.1e-66 257.3 207 66.7
MELO3C014557.2 Cucumis melo HOM05D006179 ORTHO05D008370 2.5e-66 256.1 224 62.1
ClCG02G022800 Citrullus lanatus HOM05D006179 ORTHO05D008370 5.6e-66 255.0 235 61.7
CsaV3_6G038930 Cucumis sativus L. HOM05D006179 ORTHO05D008370 9.5e-66 254.2 224 63.4
FAN21G1036 Fragaria x ananassa HOM05D006179 ORTHO05D008370 2.8e-65 252.7 206 70.4
FvH4_3g27810 Fragaria vesca HOM05D006179 ORTHO05D008370 6.2e-65 251.5 222 65.3
FAN11G2659 Fragaria x ananassa HOM05D000059 ORTHO05D008370 6.2e-65 251.5 222 65.3
arahy.Tifrunner.gnm1.ann1.0RM1GA Arachis hypogaea HOM05D006179 ORTHO05D008370 8.1e-65 251.1 179 70.9
TWI31G1173 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 1.1e-64 250.8 211 65.9
arahy.Tifrunner.gnm1.ann1.66DN5N Arachis hypogaea HOM05D006179 ORTHO05D008370 1.8e-64 250.0 179 70.4
Gohir.A07G121100 Gossypium hirsutum HOM05D006179 ORTHO05D008370 4.0e-64 248.8 223 60.1
SGA_v2.0_scaffold8G04541 Striga asiatica HOM05D006179 ORTHO05D008370 5.2e-64 248.4 145 84.8
DCAR_024400 Daucus carota HOM05D006179 ORTHO05D008370 8.9e-64 247.7 152 82.2
Gohir.D07G125300 Gossypium hirsutum HOM05D006179 ORTHO05D008370 8.9e-64 247.7 223 60.5
FAN25G1664 Fragaria x ananassa HOM05D006179 ORTHO05D008370 1.2e-63 247.3 224 67.0
Oeu061700.1 Olea europaea HOM05D006179 ORTHO05D008370 1.2e-63 247.3 225 62.7
Psat2g020720 Pisum sativum HOM05D006179 ORTHO05D008370 1.2e-63 247.3 210 65.2
Nn2g14782 Nelumbo nucifera HOM05D006179 ORTHO05D008370 3.4e-63 245.7 225 60.9
Glyma.02G279000 Glycine max HOM05D006179 ORTHO05D008370 5.8e-63 245.0 209 63.6
Nitab4.5_0001290g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 1.7e-62 243.4 171 71.9
PGSC0003DMG401004716 Solanum tuberosum HOM05D006179 ORTHO05D008370 1.7e-62 243.4 146 81.5
Migut.D00669 Erythranthe guttata HOM05D006179 ORTHO05D008370 2.9e-62 242.7 146 81.5
Solyc12g099800.2 Solanum lycopersicum HOM05D006179 ORTHO05D008370 2.9e-62 242.7 230 60.9
Sopen12g034430 Solanum pennellii HOM05D006179 ORTHO05D008370 2.9e-62 242.7 230 60.9
Gorai.001G135100 Gossypium raimondii HOM05D006179 ORTHO05D008370 6.4e-62 241.5 161 73.9
Medtr5g089330 Medicago truncatula HOM05D006179 ORTHO05D008370 6.4e-62 241.5 216 62.0
Nitab4.5_0002310g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 8.4e-62 241.1 233 61.4
Phvul.008G201800 Phaseolus vulgaris HOM05D006179 ORTHO05D008370 1.9e-61 240.0 216 62.5
Ca_06199_v3 Cicer arietinum L. HOM05D006179 ORTHO05D008370 3.2e-61 239.2 147 79.6
Lalb_Chr04g0249261 Lupinus albus HOM05D006179 ORTHO05D008370 5.4e-61 238.4 226 60.6
HanXRQChr13g0390131 Helianthus annuus HOM05D006179 ORTHO05D008370 7.1e-61 238.0 215 59.5
TPR.G16411 Trifolium pratense HOM05D006179 ORTHO05D008370 9.2e-61 237.7 222 62.6
SalBow6G4024 Salvia bowleyana HOM05D006179 ORTHO05D008370 1.2e-60 237.3 226 60.6
Cc00_g17410 Coffea canephora HOM05D006179 ORTHO05D008370 2.1e-60 236.5 154 75.3
Glyma.14G035700 Glycine max HOM05D006179 ORTHO05D008370 2.7e-60 236.1 217 61.8
PSO384G2846 Papaver somniferum HOM05D006179 ORTHO05D008370 3.5e-60 235.7 224 58.9
Cpa.g.sc157.57 Carica papaya HOM05D006179 ORTHO05D008370 7.8e-60 234.6 229 59.0
AUR62006552 Chenopodium quinoa HOM05D006179 ORTHO05D008370 7.8e-60 234.6 142 77.5
PSO339G0647 Papaver somniferum HOM05D006179 ORTHO05D008370 7.8e-60 234.6 204 62.3
AUR62000204 Chenopodium quinoa HOM05D006179 ORTHO05D008370 1.0e-59 234.2 144 77.8
VMungo0647G1137 Vigna mungo HOM05D006179 ORTHO05D008370 1.0e-59 234.2 214 60.7
Hund21973 Selenicereus undatus HOM05D006179 ORTHO05D008370 6.6e-59 231.5 141 77.3
TPR.G16393 Trifolium pratense HOM05D006179 ORTHO05D008370 1.1e-58 230.7 227 59.0
CDE02G1620 Ceratophyllum demersum HOM05D006179 ORTHO05D008370 1.9e-58 229.9 224 59.8
AUR62040469 Chenopodium quinoa HOM05D006179 ORTHO05D008370 2.5e-58 229.6 152 72.4
EL10Ac4g10106 Beta vulgaris HOM05D006179 ORTHO05D008370 9.6e-58 227.6 220 59.1
Aqoxy1G00395 Aquilegia oxysepala HOM05D006179 ORTHO05D008370 1.2e-57 227.3 222 59.0
Hund21974 Selenicereus undatus HOM05D006179 ORTHO05D008240 1.2e-57 227.3 193 62.7
Sc16g0011000 Simmondsia chinensis HOM05D006179 ORTHO05D008370 1.6e-57 226.9 143 76.9
Ah.04g159740 Amaranthus hybridus HOM05D006179 ORTHO05D008370 3.4e-55 219.2 138 76.8
unitig_62.g23875 Utricularia gibba HOM05D006179 ORTHO05D008370 1.7e-54 216.9 141 75.9
ATR0621G006 Amborella trichopoda HOM05D006179 ORTHO05D008370 1.4e-53 213.8 140 72.1
CAN.G1305.17 Capsicum annuum HOM05D006179 ORTHO05D008370 7.1e-53 211.5 232 55.2
CARHR193590 Cardamine hirsuta HOM05D006179 ORTHO05D008370 1.2e-52 210.7 221 57.5
Os07g0687500 Oryza sativa ssp. japonica HOM05D006179 ORTHO05D008370 1.2e-52 210.7 213 55.4
Peaxi162Scf00272g00828 Petunia axillaris HOM05D006179 ORTHO05D008370 1.6e-52 210.3 194 58.8
BcaB01g04864 Brassica carinata HOM05D006179 ORTHO05D008370 4.6e-52 208.8 214 58.4
A03p09460 Brassica napus HOM05D006179 ORTHO05D008370 1.3e-51 207.2 214 58.4
BraA03t10264Z Brassica rapa HOM05D006179 ORTHO05D008370 1.3e-51 207.2 214 58.4
Zm00001eb331180 Zea mays HOM05D006179 ORTHO05D008370 1.3e-51 207.2 201 57.2
Sp6g25040 Schrenkiella parvula HOM05D006179 ORTHO05D008370 1.7e-51 206.8 216 59.3
Nn7g36750 Nelumbo nucifera HOM05D006179 ORTHO05D008370 3.0e-51 206.1 141 73.0
C03p11040 Brassica napus HOM05D006179 ORTHO05D008370 6.6e-51 204.9 216 59.3
THA.LOC104811194 Tarenaya hassleriana HOM05D006179 ORTHO05D008370 6.6e-51 204.9 238 53.8
AUR62037598 Chenopodium quinoa HOM05D006179 ORTHO05D007344 1.1e-50 204.1 140 72.1
Thhalv10014227m.g Eutrema salsugineum HOM05D006179 ORTHO05D008370 7.3e-50 201.4 216 57.4
AL6G30860 Arabidopsis lyrata HOM05D006179 ORTHO05D008370 9.6e-50 201.1 214 57.5
BolC3t13573H Brassica oleracea HOM05D006179 ORTHO05D008370 1.3e-49 200.7 216 58.8
AT5G19370 Arabidopsis thaliana HOM05D006179 ORTHO05D008370 6.2e-49 198.4 220 52.3
BcaC03g13669 Brassica carinata HOM05D006179 ORTHO05D008370 6.2e-49 198.4 220 55.5
A02p05510 Brassica napus HOM05D006179 ORTHO05D008370 6.2e-49 198.4 221 55.2
BNapus_Darmor_BZH_scaffold_38p02550 Brassica napus HOM05D006179 ORTHO05D008370 6.2e-49 198.4 220 55.5
Aa31LG1G8830 Aethionema arabicum HOM05D006179 ORTHO05D008370 8.1e-49 198.0 227 53.3
SMO145G0007 Selaginella moellendorffii HOM05D006179 ORTHO05D008370 2.0e-47 193.4 153 63.4
Carub.0006s1771 Capsella rubella HOM05D006179 ORTHO05D008370 4.5e-47 192.2 222 53.2
BraA02t05502Z Brassica rapa HOM05D006179 ORTHO05D008370 4.9e-46 188.7 245 49.4
Pp3c3_13280 Physcomitrium patens HOM05D006179 ORTHO05D008370 1.1e-42 177.6 147 59.2
Mapoly0003s0043 Marchantia polymorpha HOM05D006179 ORTHO05D008370 5.6e-42 175.3 168 53.0
HPP92_028459 Vanilla planifolia HOM05D006179 ORTHO05D008370 9.6e-42 174.5 103 78.6
AagrBONN_evm.TU.Sc2ySwM_117.3174 Anthoceros agrestis HOM05D006179 ORTHO05D008370 3.7e-41 172.6 190 52.1
SEGI_16296 Sequoiadendron giganteum HOM05D006179 ORTHO05D008370 1.2e-39 167.5 105 73.3
AUR62042212 Chenopodium quinoa HOM05D006179 ORTHO05D008370 7.6e-39 164.9 116 69.0
CBR_g54969 Chara braunii HOM05D006179 ORTHO05D008370 1.6e-36 157.1 166 51.2
BcaB01g05143 Brassica carinata HOM05D006179 ORTHO05D008370 1.8e-35 153.7 99 74.7
SalBow6G2129 Salvia bowleyana HOM05D006179 ORTHO05D353266 1.5e-31 140.6 176 51.7
Eucgr.J00687 Eucalyptus grandis HOM05D006179 ORTHO05D008370 3.5e-28 129.4 71 84.5
ECA233G4787 Erigeron canadensis HOM05D006179 ORTHO05D008370 3.3e-26 122.9 74 78.4
Ciclev10017644m.g Citrus clementina HOM05D006179 ORTHO05D008370 1.3e-25 120.9 227 40.1
CSS0040024 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 6.3e-25 118.6 68 85.3
Cre07.g350400 Chlamydomonas reinhardtii HOM05D006179 ORTHO05D008370 7.2e-21 105.1 132 38.6
Peaxi162Scf00174g00223 Petunia axillaris HOM05D006179 ORTHO05D008370 1.6e-20 104.0 114 50.9
MCO13G336 Micromonas commoda HOM05D006179 ORTHO05D008370 3.1e-16 89.7 129 38.8
MCO16G521 Micromonas commoda HOM05D005637 ORTHO05D006983 2.2e-09 67.0 99 42.4
CSS0040434 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 7.0e-08 62.0 39 76.9
Haze_26617 Corylus avellana HOM05D006179 ORTHO05D164269 3.4e-07 59.7 95 36.8
C03p72380 Brassica napus HOM05D005637 ORTHO05D006983 2.9e-06 56.6 57 43.9
BolC3t19533H Brassica oleracea HOM05D005637 ORTHO05D006983 2.9e-06 56.6 57 43.9
Atru.chr9.197 Acer truncatum HOM05D005637 ORTHO05D006983 6.5e-06 55.5 58 41.4
Ciclev10022740m.g Citrus clementina HOM05D005637 ORTHO05D006983 6.5e-06 55.5 105 30.5
DCAR_026064 Daucus carota HOM05D005637 ORTHO05D006983 8.5e-06 55.1 58 41.4
Migut.I00202 Erythranthe guttata HOM05D005637 ORTHO05D006983 8.5e-06 55.1 58 41.4
Hma1.2p1_0060F.1_g033550 Hydrangea macrophylla HOM05D005637 ORTHO05D006983 8.5e-06 55.1 58 41.4
Rhsim08G0152700 Rhododendron simsii HOM05D005637 ORTHO05D006983 8.5e-06 55.1 58 41.4
SGA_v2.0_scaffold313G48341 Striga asiatica HOM05D005637 ORTHO05D006983 8.5e-06 55.1 58 41.4
unitig_748.g7812 Utricularia gibba HOM05D005637 ORTHO05D006983 8.5e-06 55.1 58 41.4


User provided reference genes

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