Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv36154 Davidia involucrata HOM05D005152 ORTHO05D006162 4.6e-294 1013.8 520 100.0
Actinidia24470 Actinidia chinensis HOM05D005152 ORTHO05D006162 2.1e-161 573.2 492 63.0
vmacro12803 Vaccinium macrocarpon HOM05D005152 ORTHO05D006162 7.7e-148 528.1 495 61.2
GSVIVG01029300001 Vitis vinifera HOM05D005152 ORTHO05D006162 5.7e-143 511.9 500 59.4
Ciclev10014592m.g Citrus clementina HOM05D005152 ORTHO05D006162 1.1e-133 481.1 496 55.6
QL01p016753 Quercus lobata HOM05D005152 ORTHO05D006162 1.2e-129 467.6 494 54.9
Haze_23256 Corylus avellana HOM05D005152 ORTHO05D006162 3.0e-128 463.0 494 54.9
Potri.009G067800 Populus trichocarpa HOM05D005152 ORTHO05D006162 2.0e-127 460.3 513 53.0
Potri.001G273600 Populus trichocarpa HOM05D005152 ORTHO05D006162 3.1e-125 453.0 507 52.7
Lj2C487T6 Lonicera japonica HOM05D005152 ORTHO05D006162 4.1e-125 452.6 499 52.9
Oeu046802.1 Olea europaea HOM05D005152 ORTHO05D006162 4.5e-124 449.1 487 53.0
CiPaw.14G111400 Carya illinoinensis HOM05D005152 ORTHO05D006162 1.5e-122 444.1 493 52.7
Prupe.4G267500 Prunus persica HOM05D005152 ORTHO05D006162 3.4e-119 433.0 490 51.8
MSTRG.20931 Avicennia marina HOM05D005152 ORTHO05D006162 1.1e-117 427.9 493 50.7
Peaxi162Scf00014g00212 Petunia axillaris HOM05D005152 ORTHO05D006162 3.1e-117 426.4 518 50.0
FAN04G0382 Fragaria x ananassa HOM05D005152 ORTHO05D006162 1.0e-115 421.4 497 50.9
FvH4_5g29960 Fragaria vesca HOM05D005152 ORTHO05D006162 1.1e-114 417.9 502 50.4
Duzib205G1611 Durio zibethinus HOM05D005152 ORTHO05D006162 2.5e-114 416.8 513 49.7
FAN13G1175 Fragaria x ananassa HOM05D005152 ORTHO05D006162 2.5e-114 416.8 517 49.7
Sabra09G0050800 Salix brachista HOM05D005152 ORTHO05D006162 2.5e-114 416.8 501 51.1
TAR636G3031 Trochodendron aralioides HOM05D005152 ORTHO05D006162 6.1e-113 412.1 473 52.2
Thecc.03G310200 Theobroma cacao HOM05D005152 ORTHO05D006162 1.8e-112 410.6 493 50.1
Nn7g36798 Nelumbo nucifera HOM05D005152 ORTHO05D006162 2.3e-112 410.2 503 49.9
CAN.G1514.1 Capsicum annuum HOM05D005152 ORTHO05D006162 3.4e-111 406.4 502 49.0
TWI75G0576 Tripterygium wilfordii HOM05D005152 ORTHO05D006162 4.4e-111 406.0 511 47.7
MD15G1434100 Malus domestica HOM05D005152 ORTHO05D006162 7.5e-111 405.2 492 49.6
Hund07432 Selenicereus undatus HOM05D005152 ORTHO05D006162 7.5e-111 405.2 501 48.1
Nitab4.5_0000236g0070 Nicotiana tabacum HOM05D005152 ORTHO05D006162 2.4e-109 400.2 506 50.2
COL.COLO4_16941 Corchorus olitorius HOM05D005152 ORTHO05D006162 1.2e-108 397.9 492 49.2
Cfa009894 Carpinus fangiana HOM05D005152 ORTHO05D006162 3.5e-108 396.4 519 48.0
PGSC0003DMG400017379 Solanum tuberosum HOM05D005152 ORTHO05D006162 3.5e-108 396.4 498 48.2
FAN08G2618 Fragaria x ananassa HOM05D005152 ORTHO05D006162 3.0e-107 393.3 505 49.1
Sopen07g023910 Solanum pennellii HOM05D005152 ORTHO05D006162 3.0e-107 393.3 506 48.6
Nitab4.5_0000975g0020 Nicotiana tabacum HOM05D005152 ORTHO05D006162 6.6e-107 392.1 507 49.1
Solyc07g045370.3 Solanum lycopersicum HOM05D005152 ORTHO05D006162 6.6e-107 392.1 506 48.8
Gorai.003G185300 Gossypium raimondii HOM05D005152 ORTHO05D006162 5.6e-106 389.0 492 48.6
Gohir.D03G176100 Gossypium hirsutum HOM05D005152 ORTHO05D006162 3.6e-105 386.3 492 48.8
FAN18G0878 Fragaria x ananassa HOM05D005152 ORTHO05D006162 4.7e-105 386.0 506 48.2
Phvul.008G202300 Phaseolus vulgaris HOM05D005152 ORTHO05D006162 6.2e-105 385.6 511 46.2
RcHm_v2.0_Chr7g0223811 Rosa chinensis HOM05D005152 ORTHO05D006162 6.8e-104 382.1 493 47.7
SalBow4G0649 Salvia bowleyana HOM05D005152 ORTHO05D006162 1.2e-103 381.3 496 46.4
Eucgr.J00691 Eucalyptus grandis HOM05D005152 ORTHO05D006162 2.6e-103 380.2 495 47.3
Gohir.A03G000034 Gossypium hirsutum HOM05D005152 ORTHO05D006162 2.6e-103 380.2 493 47.9
Manes.02G136600 Manihot esculenta HOM05D005152 ORTHO05D006162 5.8e-103 379.0 511 48.1
Atru.chr11.1591 Acer truncatum HOM05D005152 ORTHO05D006162 2.9e-102 376.7 414 52.9
Glyma.14G036100 Glycine max HOM05D005152 ORTHO05D006162 7.0e-101 372.1 515 46.8
arahy.Tifrunner.gnm1.ann1.3CD1QA Arachis hypogaea HOM05D005152 ORTHO05D006162 9.2e-101 371.7 495 46.7
Lalb_Chr10g0106191 Lupinus albus HOM05D005152 ORTHO05D006162 2.7e-100 370.2 495 47.3
DCAR_002098 Daucus carota HOM05D005152 ORTHO05D006162 7.8e-100 368.6 496 48.4
arahy.Tifrunner.gnm1.ann1.NHHR58 Arachis hypogaea HOM05D005152 ORTHO05D006162 6.6e-99 365.5 505 45.3
Lsat_1_v5_gn_2_33000 Lactuca sativa HOM05D005152 ORTHO05D006162 1.5e-98 364.4 493 46.5
ECA238G0396 Erigeron canadensis HOM05D005152 ORTHO05D006162 1.9e-98 364.0 485 45.6
EL10Ac4g10101 Beta vulgaris HOM05D005152 ORTHO05D006162 2.5e-98 363.6 502 44.2
Ca_06203_v3 Cicer arietinum L. HOM05D005152 ORTHO05D006162 8.1e-97 358.6 493 44.6
Ca_06206_v3 Cicer arietinum L. HOM05D005152 ORTHO05D006162 8.1e-97 358.6 493 44.6
AUR62000209 Chenopodium quinoa HOM05D005152 ORTHO05D006162 1.1e-96 358.2 497 43.9
VMungo0647G0059 Vigna mungo HOM05D005152 ORTHO05D006162 1.1e-96 358.2 499 43.9
HanXRQChr14g0432261 Helianthus annuus HOM05D005152 ORTHO05D006162 2.3e-96 357.1 492 45.7
Migut.A00480 Erythranthe guttata HOM05D005152 ORTHO05D006162 4.4e-95 352.8 494 43.5
MBI19_g42986_MAGBIO Magnolia biondii HOM05D005152 ORTHO05D006162 4.4e-95 352.8 512 45.9
Ah.06g194700 Amaranthus hybridus HOM05D005152 ORTHO05D006178 5.8e-95 352.4 480 46.0
CANSAT11G0534 Cannabis sativa HOM05D005152 ORTHO05D006162 2.2e-94 350.5 486 44.7
LjContig00564g0003451 Lotus japonicus HOM05D005152 ORTHO05D006162 3.2e-93 346.7 501 45.5
Sc09g0005710 Simmondsia chinensis HOM05D005152 ORTHO05D006162 1.2e-92 344.7 543 42.2
AUR62006555 Chenopodium quinoa HOM05D005152 ORTHO05D006162 2.1e-92 344.0 498 43.4
ClCG02G022750 Citrullus lanatus HOM05D005152 ORTHO05D006162 7.8e-92 342.0 494 45.3
Oeu022376.1 Olea europaea HOM05D005152 ORTHO05D006162 1.7e-91 340.9 490 45.9
CsaV3_6G038870 Cucumis sativus L. HOM05D005152 ORTHO05D006162 2.3e-91 340.5 495 45.7
Sed0006572 Sechium edule HOM05D005152 ORTHO05D006162 2.3e-91 340.5 495 46.5
MELO3C014552.2 Cucumis melo HOM05D005152 ORTHO05D006162 1.9e-90 337.4 495 44.8
Glyma.02G278500 Glycine max HOM05D005152 ORTHO05D006162 3.3e-90 336.7 515 43.1
Medtr5g089190 Medicago truncatula HOM05D005152 ORTHO05D006162 1.5e-87 327.8 497 42.3
Psat2g020920 Pisum sativum HOM05D005152 ORTHO05D006162 2.2e-86 323.9 508 42.3
Aqoxy1G00386 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 2.7e-84 317.0 514 41.1
Aqoxy7G02965 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 1.3e-83 314.7 514 40.5
TPR.G16391 Trifolium pratense HOM05D005152 ORTHO05D006162 3.6e-81 306.6 506 40.1
Thhalv10012989m.g Eutrema salsugineum HOM05D005152 ORTHO05D006162 1.4e-80 304.7 527 39.8
Sp6g31420 Schrenkiella parvula HOM05D005152 ORTHO05D006162 5.8e-79 299.3 525 38.9
Rhsim13G0207600 Rhododendron simsii HOM05D005152 ORTHO05D006162 7.6e-79 298.9 206 76.7
THA.LOC104799141 Tarenaya hassleriana HOM05D005152 ORTHO05D006162 7.6e-79 298.9 515 40.8
PSO339G4523 Papaver somniferum HOM05D005152 ORTHO05D006162 7.1e-77 292.4 497 40.8
CARHR200900 Cardamine hirsuta HOM05D005152 ORTHO05D006162 3.0e-75 287.0 528 38.4
AL6G23010 Arabidopsis lyrata HOM05D005152 ORTHO05D006162 3.9e-75 286.6 525 38.7
PSO384G2750 Papaver somniferum HOM05D005152 ORTHO05D006162 3.9e-75 286.6 497 40.2
THA.LOC104816332 Tarenaya hassleriana HOM05D005152 ORTHO05D006162 6.6e-75 285.8 523 40.3
Carub.0006s1072 Capsella rubella HOM05D005152 ORTHO05D006162 1.5e-74 284.6 521 38.6
AT5G12220 Arabidopsis thaliana HOM05D005152 ORTHO05D006162 4.8e-73 279.6 525 38.3
Cpa.g.c26789.2 Carica papaya HOM05D005152 ORTHO05D006162 8.1e-73 278.9 421 42.5
C03p06370 Brassica napus HOM05D005152 ORTHO05D006162 3.1e-72 276.9 527 38.0
A03p05460 Brassica napus HOM05D005152 ORTHO05D006162 9.0e-72 275.4 527 38.1
BraA03t09884Z Brassica rapa HOM05D005152 ORTHO05D006162 2.0e-71 274.2 524 38.0
Prupe.3G132200 Prunus persica HOM05D005152 ORTHO05D006162 7.1e-69 265.8 318 49.7
BolC3t13143H Brassica oleracea HOM05D005152 ORTHO05D006162 1.2e-68 265.0 527 37.6
BcaB01g05418 Brassica carinata HOM05D005152 ORTHO05D006162 6.0e-68 262.7 528 37.1
Aa31LG3G15010 Aethionema arabicum HOM05D005152 ORTHO05D006162 3.0e-67 260.4 527 36.8
CDE04G1157 Ceratophyllum demersum HOM05D005152 ORTHO05D006162 8.1e-65 252.3 505 37.0
Rhsim13G0207500 Rhododendron simsii HOM05D005152 ORTHO05D006162 4.0e-64 250.0 370 44.1
unitig_748.g8148 Utricularia gibba HOM05D005152 ORTHO05D006162 6.9e-64 249.2 500 35.6
Atru.chr10.529 Acer truncatum HOM05D005152 ORTHO05D006162 4.3e-58 229.9 385 39.2
PGR119G0699 Punica granatum HOM05D005152 ORTHO05D006162 1.4e-56 224.9 501 34.5
ATR1096G100 Amborella trichopoda HOM05D005152 ORTHO05D006162 4.9e-54 216.5 516 33.7
Cc02_g30140 Coffea canephora HOM05D005152 ORTHO05D006162 7.4e-50 202.6 206 57.8
Hma1.2p1_0460F.1_g157490 Hydrangea macrophylla HOM05D005152 ORTHO05D006162 1.8e-48 198.0 164 65.9
A02p39210 Brassica napus HOM05D005152 ORTHO05D006162 3.8e-46 190.3 349 39.3
MD08G1241100 Malus domestica HOM05D005152 ORTHO05D006162 1.9e-45 188.0 228 49.1
CDE07G1900 Ceratophyllum demersum HOM05D005152 ORTHO05D006162 2.5e-45 187.6 342 38.9
Sc09g0005650 Simmondsia chinensis HOM05D005152 ORTHO05D006162 7.2e-45 186.0 239 45.6
Sabra16G0168500 Salix brachista HOM05D005152 ORTHO05D006162 1.6e-44 184.9 377 37.7
Os12g0189900 Oryza sativa ssp. japonica HOM05D005152 ORTHO05D006162 1.5e-42 178.3 511 32.3
Atru.chr11.1397 Acer truncatum HOM05D005152 ORTHO05D006162 2.5e-42 177.6 168 54.2
MD08G1241200 Malus domestica HOM05D005152 ORTHO05D006162 5.7e-42 176.4 224 46.4
Zm00001eb150380 Zea mays HOM05D005152 ORTHO05D006162 1.8e-40 171.4 503 31.6
HPP92_019896 Vanilla planifolia HOM05D005152 ORTHO05D006162 1.2e-39 168.7 488 32.6
Oeu053695.1 Olea europaea HOM05D005152 ORTHO05D006162 1.6e-36 158.3 177 49.2
Sc09g0005680 Simmondsia chinensis HOM05D005152 ORTHO05D006162 1.4e-32 145.2 316 33.9
Atru.chr11.1398 Acer truncatum HOM05D005152 ORTHO05D006162 1.7e-25 121.7 165 48.5
SEGI_04037 Sequoiadendron giganteum HOM05D005152 ORTHO05D006162 2.0e-23 114.8 486 27.8
Sc09g0005670 Simmondsia chinensis HOM05D005152 ORTHO05D006162 3.8e-22 110.5 184 37.5
PGSC0003DMG400035925 Solanum tuberosum HOM05D005152 ORTHO05D006162 2.6e-18 97.8 117 47.9
Atru.chr11.1399 Acer truncatum HOM05D005152 ORTHO05D006162 9.1e-16 89.4 77 55.8
Aqoxy4G01955 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 4.2e-13 80.5 145 40.0
Sc09g0001090 Simmondsia chinensis HOM05D005152 ORTHO05D006162 6.1e-12 76.6 93 44.1
SMO361G0105 Selaginella moellendorffii HOM05D005152 ORTHO05D006162 9.8e-10 69.3 498 22.7
Sc09g0005660 Simmondsia chinensis HOM05D005152 ORTHO05D006162 3.1e-08 64.3 39 71.8
Cpa.g.c26789.1 Carica papaya HOM05D005152 ORTHO05D006162 5.4e-08 63.5 59 52.5
Sc09g0005730 Simmondsia chinensis HOM05D005152 ORTHO05D006162 4.5e-07 60.5 99 41.4
Sc09g0005750 Simmondsia chinensis HOM05D005152 ORTHO05D006162 1.3e-06 58.9 77 45.5


User provided reference genes

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