Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 7.5e-121 437.2 218 100.0
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 2.3e-114 415.6 227 92.1
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 3.0e-114 415.2 229 92.1
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 6.8e-114 414.1 229 92.1
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 1.2e-113 413.3 229 91.3
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 1.2e-113 413.3 229 91.7
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 1.5e-113 412.9 229 91.7
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 1.5e-113 412.9 229 92.1
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 1.5e-113 412.9 229 91.3
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 2.0e-113 412.5 227 90.7
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 2.0e-113 412.5 227 90.7
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 2.6e-113 412.1 229 90.8
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 2.6e-113 412.1 229 91.3
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 2.6e-113 412.1 229 91.3
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 3.4e-113 411.8 229 91.3
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 3.4e-113 411.8 229 91.3
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 4.4e-113 411.4 229 91.3
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 4.4e-113 411.4 229 90.8
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 4.4e-113 411.4 229 91.3
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 7.5e-113 410.6 229 91.7
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 7.5e-113 410.6 229 90.8
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 9.8e-113 410.2 229 90.8
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 1.3e-112 409.8 229 91.3
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 1.3e-112 409.8 229 90.4
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 1.7e-112 409.5 229 90.4
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 1.7e-112 409.5 229 89.1
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 2.2e-112 409.1 226 91.2
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 2.2e-112 409.1 226 91.2
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 2.2e-112 409.1 229 90.0
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 2.2e-112 409.1 229 90.0
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 2.8e-112 408.7 229 90.4
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 4.9e-112 407.9 229 90.0
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 4.9e-112 407.9 229 90.0
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 4.9e-112 407.9 229 90.8
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 6.3e-112 407.5 229 89.5
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 6.3e-112 407.5 229 89.5
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 6.3e-112 407.5 229 90.0
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 8.3e-112 407.1 227 90.7
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 8.3e-112 407.1 226 90.7
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 8.3e-112 407.1 229 89.5
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 8.3e-112 407.1 229 90.0
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 8.3e-112 407.1 229 90.0
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 1.8e-111 406.0 227 89.0
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 2.4e-111 405.6 229 89.1
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 2.4e-111 405.6 229 90.0
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 7.0e-111 404.1 229 89.5
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 7.0e-111 404.1 227 89.9
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 7.0e-111 404.1 229 88.6
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 7.0e-111 404.1 229 90.4
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 1.6e-110 402.9 227 88.5
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 2.7e-110 402.1 229 89.1
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 2.7e-110 402.1 227 89.0
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 2.7e-110 402.1 228 89.5
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 4.5e-110 401.4 227 88.5
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 4.5e-110 401.4 227 88.5
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 7.7e-110 400.6 227 88.1
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 1.0e-109 400.2 229 87.3
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 1.0e-109 400.2 229 89.1
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 2.3e-109 399.1 229 88.6
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 3.8e-109 398.3 229 87.3
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 6.6e-109 397.5 227 86.3
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 8.6e-109 397.1 229 86.9
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 5.6e-108 394.4 229 86.5
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 7.3e-108 394.0 229 86.9
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 7.3e-108 394.0 229 86.0
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 9.5e-108 393.7 229 86.9
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 9.5e-108 393.7 220 89.5
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.2e-107 393.3 220 90.5
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 1.2e-107 393.3 228 86.8
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 6.1e-107 391.0 228 86.8
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 2.3e-106 389.0 227 85.9
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 4.0e-106 388.3 227 85.5
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 6.8e-106 387.5 227 85.9
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 6.8e-106 387.5 227 85.9
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 6.8e-106 387.5 227 85.9
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 6.8e-106 387.5 227 85.9
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 6.8e-106 387.5 227 85.9
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 1.5e-105 386.3 227 84.1
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 1.5e-105 386.3 227 85.5
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 3.4e-105 385.2 218 88.1
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 7.5e-105 384.0 236 82.6
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 1.7e-104 382.9 227 84.1
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 4.9e-104 381.3 229 85.2
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 8.3e-104 380.6 227 84.1
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 2.4e-103 379.0 227 83.3
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 5.4e-103 377.9 227 82.4
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 7.0e-103 377.5 227 82.4
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 7.0e-103 377.5 229 81.2
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 9.2e-103 377.1 227 82.4
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 2.0e-102 375.9 229 80.8
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 2.7e-102 375.6 227 81.9
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 2.7e-102 375.6 226 82.7
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 7.8e-102 374.0 226 82.7
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 1.0e-101 373.6 228 81.6
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 1.0e-101 373.6 227 81.9
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 1.7e-101 372.9 254 76.8
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 3.0e-101 372.1 227 81.5
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 2.1e-99 365.9 227 80.2
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 5.8e-97 357.8 204 89.2
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 7.5e-97 357.5 227 76.2
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 9.8e-97 357.1 202 90.1
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 8.3e-96 354.0 201 88.6
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 4.1e-95 351.7 229 76.9
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 9.2e-95 350.5 203 88.2
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 2.3e-93 345.9 227 71.8
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 3.3e-92 342.0 229 72.5
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 3.3e-92 342.0 229 72.5
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 1.4e-90 336.7 210 79.0
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 8.9e-90 334.0 200 85.0
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 2.0e-89 332.8 190 91.1
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 7.5e-89 330.9 250 71.6
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 7.5e-89 330.9 233 76.0
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 1.3e-88 330.1 190 88.9
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 1.7e-88 329.7 191 89.0
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 2.4e-87 325.9 219 78.1
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 2.4e-87 325.9 187 89.3
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 5.4e-87 324.7 191 86.4
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 5.4e-87 324.7 222 75.7
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 2.1e-86 322.8 227 72.7
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 4.6e-86 321.6 226 68.6
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 3.0e-85 318.9 185 89.7
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 6.6e-85 317.8 165 94.5
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 8.1e-83 310.8 185 84.9
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 1.5e-81 306.6 215 73.5
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.1e-74 283.9 167 83.8
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 3.1e-74 282.3 355 48.7
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 9.9e-73 277.3 164 87.8
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 3.3e-68 262.3 159 76.7
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 3.3e-60 235.7 120 93.3
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 2.0e-57 226.5 131 80.2
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 1.4e-47 193.7 154 64.3
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 2.5e-36 156.4 140 58.6
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 5.5e-23 112.1 77 67.5
CARHR037280 Cardamine hirsuta HOM05D005468 ORTHO05D006789 3.0e-21 106.3 58 91.4
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 3.1e-18 96.3 152 41.4
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 4.2e-15 85.9 45 84.4
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 2.7e-14 83.2 66 63.6
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 5.2e-13 79.0 52 67.3
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 2.0e-12 77.0 79 51.9
Actinidia01618 Actinidia chinensis HOM05D000509 ORTHO05D000466 2.6e-12 76.6 113 46.9
ClCG05G019450 Citrullus lanatus HOM05D005468 ORTHO05D006789 5.5e-07 58.9 26 100.0


User provided reference genes

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