Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 0.0e+00 1864.4 917 100.0
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 0.0e+00 1696.4 918 92.7
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 0.0e+00 1151.0 883 66.7
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 9.9e-308 1060.1 831 64.1
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 5.3e-293 1011.1 747 68.0
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 1.2e-281 973.4 785 63.4
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 6.0e-281 971.1 796 65.6
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 1.9e-274 949.5 866 59.1
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 9.1e-269 930.6 929 54.0
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 2.2e-267 926.0 900 55.4
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.0e-264 917.1 898 55.8
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 1.1e-263 913.7 869 56.2
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 6.3e-262 907.9 913 53.7
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 1.5e-260 903.3 892 54.7
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 4.5e-260 901.7 892 53.5
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 2.5e-258 896.0 891 53.6
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 6.1e-257 891.3 891 53.9
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 2.3e-256 889.4 893 53.9
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 2.3e-256 889.4 892 54.0
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 5.2e-256 888.3 888 53.0
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 3.5e-252 875.5 887 52.5
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 7.7e-252 874.4 888 52.5
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 3.8e-251 872.1 888 52.4
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 3.6e-249 865.5 886 52.4
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 6.1e-249 864.8 888 52.3
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 1.3e-238 830.5 863 50.9
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.1e-237 827.4 911 52.0
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 1.6e-236 823.5 891 49.3
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 5.9e-236 821.6 929 49.2
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 1.0e-235 820.8 869 51.6
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 2.3e-235 819.7 891 50.4
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 1.8e-232 810.1 824 51.1
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 3.3e-226 789.3 880 49.7
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 8.3e-222 774.6 890 48.3
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 2.7e-220 769.6 899 48.3
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 1.1e-218 764.2 928 47.5
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 9.5e-218 761.1 932 46.9
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 2.0e-215 753.4 890 47.5
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 2.6e-215 753.1 891 47.0
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 9.8e-215 751.1 683 55.6
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 2.2e-214 750.0 901 47.7
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 1.1e-213 747.7 904 46.9
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 2.4e-213 746.5 855 47.4
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 4.1e-213 745.7 871 46.6
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 1.6e-212 743.8 902 46.7
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 2.7e-212 743.0 892 47.8
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 2.7e-212 743.0 889 47.6
ECA238G4368 Erigeron canadensis HOM05D004345 ORTHO05D005192 2.5e-210 736.5 822 47.9
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 8.9e-208 728.0 821 48.8
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 4.4e-207 725.7 823 48.5
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 4.4e-207 725.7 890 47.5
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 9.9e-207 724.5 889 46.2
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 2.9e-206 723.0 825 47.8
Medtr3g069120 Medicago truncatula HOM05D004345 ORTHO05D005192 1.4e-205 720.7 894 46.4
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 9.2e-205 718.0 854 49.4
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 3.5e-204 716.1 880 46.8
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 1.7e-203 713.8 895 45.7
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 1.7e-198 697.2 934 44.4
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 3.5e-196 689.5 895 42.8
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 4.6e-196 689.1 753 50.9
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 4.3e-194 682.6 903 44.0
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 4.9e-190 669.1 838 45.0
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 1.1e-189 667.9 899 44.8
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 1.9e-189 667.2 920 42.7
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 5.4e-189 665.6 893 46.0
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 1.2e-188 664.5 933 44.4
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 1.6e-188 664.1 895 45.5
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 3.9e-187 659.4 897 45.3
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 2.5e-186 656.8 933 44.1
SHI21683 Sapria himalayana HOM05D004345 ORTHO05D005192 9.6e-186 654.8 893 42.4
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 1.3e-185 654.4 908 43.4
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 2.9e-182 643.3 925 41.0
THA.LOC104803578 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 3.2e-181 639.8 843 44.1
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 1.0e-179 634.8 887 43.1
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 2.1e-177 627.1 744 47.0
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 3.1e-176 623.2 887 41.4
RcHm_v2.0_Chr7g0216331 Rosa chinensis HOM05D004345 ORTHO05D005192 1.2e-175 621.3 886 43.2
Aa31LG8G3600 Aethionema arabicum HOM05D004345 ORTHO05D005192 1.9e-170 604.0 776 45.0
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 2.0e-167 594.0 778 44.0
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 2.0e-167 594.0 765 44.1
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 6.5e-166 589.0 779 43.4
AT3G18310 Arabidopsis thaliana HOM05D004345 ORTHO05D005192 5.7e-162 575.9 774 41.7
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 1.4e-157 561.2 777 42.6
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 2.7e-156 557.0 766 42.6
CARHR093680 Cardamine hirsuta HOM05D004345 ORTHO05D005192 2.7e-156 557.0 774 41.9
BolC5t33472H Brassica oleracea HOM05D004345 ORTHO05D005192 3.9e-155 553.1 773 42.4
C05p47630 Brassica napus HOM05D004345 ORTHO05D005192 2.2e-153 547.4 773 42.4
BraA05t21971Z Brassica rapa HOM05D004345 ORTHO05D005192 2.2e-153 547.4 774 42.1
A05p31330 Brassica napus HOM05D004345 ORTHO05D005192 1.2e-151 541.6 774 41.9
Thhalv10003730m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 4.1e-144 516.5 684 42.0
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 4.5e-143 513.1 675 44.4
unitig_744.g24116 Utricularia gibba HOM05D004345 ORTHO05D005192 5.3e-136 489.6 849 36.6
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 8.5e-134 482.3 810 39.8
PSO210G0907 Papaver somniferum HOM05D004345 ORTHO05D005192 1.2e-130 471.9 855 37.0
TAR383G0351 Trochodendron aralioides HOM05D004345 ORTHO05D005192 7.5e-130 469.2 404 59.9
QL07p001298 Quercus lobata HOM05D004345 ORTHO05D005192 1.3e-129 468.4 875 38.5
Oeu031657.1 Olea europaea HOM05D004345 ORTHO05D005192 3.1e-128 463.8 547 47.5
Cpa.g.sc3060.1 Carica papaya HOM05D004345 ORTHO05D005192 2.8e-116 424.1 886 34.8
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 1.2e-114 418.7 887 35.3
ATR0691G134 Amborella trichopoda HOM05D004345 ORTHO05D005192 2.3e-107 394.4 954 32.8
C05p47510 Brassica napus HOM05D004345 ORTHO05D005192 4.0e-107 393.7 696 37.5
Aqoxy7G01729 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 2.2e-105 387.9 486 43.8
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 3.7e-105 387.1 540 43.5
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 3.0e-94 350.9 539 39.3
COL.COLO4_14552 Corchorus olitorius HOM05D004345 ORTHO05D005192 3.0e-94 350.9 383 51.4
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 1.9e-88 331.6 881 31.7
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 4.7e-84 317.0 901 29.2
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 5.2e-83 313.5 672 33.9
PSO384G0273 Papaver somniferum HOM05D004345 ORTHO05D005192 2.7e-79 301.2 499 37.7
ATR0446G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.6e-79 300.4 782 30.9
Os09g0104700 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 6.6e-78 296.6 798 29.9
PSO210G0382 Papaver somniferum HOM05D004345 ORTHO05D005192 4.4e-74 283.9 436 39.0
BcaB01g01503 Brassica carinata HOM05D004345 ORTHO05D005192 2.1e-71 275.0 350 43.4
PSO384G0711 Papaver somniferum HOM05D004345 ORTHO05D005192 2.6e-66 258.1 374 41.7
MBI07_g44810_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.6e-60 238.8 454 37.9
ATR0022G053 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.7e-60 237.7 449 35.6
ATR1192G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 8.1e-60 236.5 453 35.8
BcaC05g28685 Brassica carinata HOM05D004345 ORTHO05D005192 6.0e-55 220.3 286 44.8
QL07p000983 Quercus lobata HOM05D004345 ORTHO05D005192 5.1e-54 217.2 180 60.0
Gohir.D11G289900 Gossypium hirsutum HOM05D004345 ORTHO05D005192 3.3e-53 214.5 399 33.3
RcHm_v2.0_Chr6g0264721 Rosa chinensis HOM05D004345 ORTHO05D005192 5.6e-53 213.8 201 51.7
Gorai.007G313800 Gossypium raimondii HOM05D004345 ORTHO05D005192 7.4e-53 213.4 399 33.1
SEGI_03816 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 7.1e-48 196.8 662 28.1
THA.LOC104807021 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 3.1e-43 181.4 273 42.1
BolC5t33532H Brassica oleracea HOM05D004345 ORTHO05D005192 5.9e-42 177.2 247 42.1
MBI07_g37626_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.0e-38 166.4 462 33.8
PSO407G0063 Papaver somniferum HOM05D004345 ORTHO05D005192 5.3e-35 154.1 305 34.4
BcaB06g25876 Brassica carinata HOM05D004345 ORTHO05D005192 6.9e-35 153.7 220 39.5
ATR0661G336 Amborella trichopoda HOM05D004345 ORTHO05D005192 2.0e-34 152.1 505 29.7
SMO297G0008 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 1.3e-33 149.4 795 24.5
SMO203G0127 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 3.8e-33 147.9 583 24.9
A05p31320 Brassica napus HOM05D004345 ORTHO05D005192 8.5e-33 146.7 306 29.7
BraA05t21970Z Brassica rapa HOM05D004345 ORTHO05D005192 8.5e-33 146.7 306 29.7
Psat5g200920 Pisum sativum HOM05D000856 ORTHO05D005192 1.7e-28 132.5 111 55.9
ATR0964G004 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.8e-28 131.0 392 29.8
ATR0792G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.1e-27 127.9 375 29.9
Pp3c14_24820 Physcomitrium patens HOM05D004345 ORTHO05D005192 4.5e-26 124.4 526 25.7
ATR0560G006 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.0e-25 123.2 217 36.9
AagrBONN_evm.TU.Sc2ySwM_344.4665 Anthoceros agrestis HOM05D004345 ORTHO05D005192 2.2e-25 122.1 401 28.9
Sc22g0003820 Simmondsia chinensis HOM05D004345 ORTHO05D005192 3.0e-22 111.7 154 43.5
Mapoly0100s0030 Marchantia polymorpha HOM05D004345 ORTHO05D005192 2.6e-18 98.6 627 22.6
ATR0661G406 Amborella trichopoda HOM05D004345 ORTHO05D005192 4.2e-16 91.3 248 30.2
CDE04G1779 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 4.1e-11 74.7 251 31.1
Oeu011014.1 Olea europaea HOM05D004345 ORTHO05D005192 1.3e-09 69.7 107 39.3
Oeu028553.1 Olea europaea HOM05D004345 ORTHO05D005192 1.9e-08 65.9 107 37.4
SEGI_28583 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 1.2e-07 63.2 282 23.8
ATR0560G003 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.0e-06 60.1 197 28.4
C05p47540 Brassica napus HOM05D004345 ORTHO05D005192 1.0e-06 60.1 57 45.6


User provided reference genes

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