Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35980 Davidia involucrata HOM05D004348 ORTHO05D006191 0.0e+00 1867.0 944 100.0
TAR625G1112 Trochodendron aralioides HOM05D004348 ORTHO05D006191 0.0e+00 1431.4 933 78.7
Hma1.2p1_0337F.1_g129300 Hydrangea macrophylla HOM05D004348 ORTHO05D006191 0.0e+00 1409.4 925 78.3
Cfa018516 Carpinus fangiana HOM05D004348 ORTHO05D006191 0.0e+00 1393.3 925 76.1
Lj4A53T53 Lonicera japonica HOM05D004348 ORTHO05D006191 0.0e+00 1387.1 929 77.2
CSS0012651 Camellia sinensis var. sinensis HOM05D004348 ORTHO05D006191 0.0e+00 1371.3 923 76.8
GSVIVG01009553001 Vitis vinifera HOM05D004348 ORTHO05D006191 0.0e+00 1362.1 924 76.1
Atru.chr1.1668 Acer truncatum HOM05D004348 ORTHO05D006191 0.0e+00 1359.7 925 75.1
Atru.chr13.637 Acer truncatum HOM05D004348 ORTHO05D006191 0.0e+00 1348.2 925 74.9
QL02p005708 Quercus lobata HOM05D004348 ORTHO05D006191 0.0e+00 1345.5 926 75.5
Rhsim06G0047100 Rhododendron simsii HOM05D004348 ORTHO05D006191 0.0e+00 1343.6 925 75.1
Prupe.1G440200 Prunus persica HOM05D004348 ORTHO05D006191 0.0e+00 1337.0 926 73.8
vmacro21553 Vaccinium macrocarpon HOM05D004348 ORTHO05D006191 0.0e+00 1336.2 925 74.8
RcHm_v2.0_Chr6g0307221 Rosa chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1332.8 926 73.5
MD15G1086600 Malus domestica HOM05D004348 ORTHO05D006191 0.0e+00 1321.6 925 72.6
Ciclev10000175m.g Citrus clementina HOM05D004348 ORTHO05D006191 0.0e+00 1312.7 927 72.3
Dinv39334 Davidia involucrata HOM05D004348 ORTHO05D006191 0.0e+00 1312.4 783 86.8
Potri.014G034100 Populus trichocarpa HOM05D004348 ORTHO05D006191 0.0e+00 1302.3 925 72.3
MD08G1105600 Malus domestica HOM05D004348 ORTHO05D006191 0.0e+00 1299.6 925 72.3
Nn5g30212 Nelumbo nucifera HOM05D004348 ORTHO05D006191 0.0e+00 1294.6 923 72.6
FvH4_2g34840 Fragaria vesca HOM05D004348 ORTHO05D006191 0.0e+00 1294.3 925 72.0
COL.COLO4_26463 Corchorus olitorius HOM05D004348 ORTHO05D006191 0.0e+00 1293.9 925 73.3
Sabra14G0024200 Salix brachista HOM05D004348 ORTHO05D006191 0.0e+00 1293.5 925 71.8
PGSC0003DMG400007988 Solanum tuberosum HOM05D004348 ORTHO05D006191 0.0e+00 1293.5 926 71.6
Cc10_g04460 Coffea canephora HOM05D004348 ORTHO05D006191 0.0e+00 1291.2 925 72.3
Thecc.08G012500 Theobroma cacao HOM05D004348 ORTHO05D006191 0.0e+00 1286.2 927 72.7
Sopen04g032870 Solanum pennellii HOM05D004348 ORTHO05D006191 0.0e+00 1285.0 926 71.5
Solyc04g079280.4 Solanum lycopersicum HOM05D004348 ORTHO05D006191 0.0e+00 1284.6 926 71.3
Oeu057258.1 Olea europaea HOM05D004348 ORTHO05D006191 0.0e+00 1284.2 935 72.2
Migut.N02696 Erythranthe guttata HOM05D004348 ORTHO05D006191 0.0e+00 1283.5 929 72.2
Oeu003300.1 Olea europaea HOM05D004348 ORTHO05D006191 0.0e+00 1283.5 941 71.0
DCAR_020931 Daucus carota HOM05D004348 ORTHO05D006191 0.0e+00 1279.2 924 71.1
CsaV3_4G034150 Cucumis sativus L. HOM05D004348 ORTHO05D006191 0.0e+00 1275.4 923 71.4
CiPaw.16G046500 Carya illinoinensis HOM05D004348 ORTHO05D006191 0.0e+00 1274.6 925 71.6
Aqoxy5G01277 Aquilegia oxysepala HOM05D004348 ORTHO05D006191 0.0e+00 1273.5 929 71.5
Duzib093G0393 Durio zibethinus HOM05D004348 ORTHO05D006191 0.0e+00 1271.1 925 72.5
Manes.05G171200 Manihot esculenta HOM05D004348 ORTHO05D006191 0.0e+00 1266.9 925 70.8
Gorai.002G131100 Gossypium raimondii HOM05D004348 ORTHO05D006191 0.0e+00 1264.6 926 71.6
Sed0015301 Sechium edule HOM05D004348 ORTHO05D006191 0.0e+00 1263.4 923 71.1
Gohir.A01G118500 Gossypium hirsutum HOM05D004348 ORTHO05D006191 0.0e+00 1261.9 925 71.4
Nitab4.5_0000068g0550 Nicotiana tabacum HOM05D004348 ORTHO05D006191 0.0e+00 1259.2 926 70.7
FAN27G3414 Fragaria x ananassa HOM05D004348 ORTHO05D006191 0.0e+00 1257.3 925 70.9
Gohir.D01G106800 Gossypium hirsutum HOM05D004348 ORTHO05D006191 0.0e+00 1255.7 925 71.0
CAN.G371.44 Capsicum annuum HOM05D004348 ORTHO05D006191 0.0e+00 1254.2 927 70.1
FAN15G1136 Fragaria x ananassa HOM05D004348 ORTHO05D006191 0.0e+00 1253.4 924 70.6
Sed0012719 Sechium edule HOM05D004348 ORTHO05D006191 0.0e+00 1253.4 921 70.8
Cpa.g.c24415.13 Carica papaya HOM05D004348 ORTHO05D006191 0.0e+00 1250.3 925 72.2
Actinidia15256 Actinidia chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1246.5 920 71.1
Peaxi162Scf00528g00825 Petunia axillaris HOM05D004348 ORTHO05D006191 0.0e+00 1245.3 926 70.2
Lj5g0025546 Lotus japonicus HOM05D004348 ORTHO05D006191 0.0e+00 1241.1 935 69.7
EL10Ac1g01783 Beta vulgaris HOM05D004348 ORTHO05D006191 0.0e+00 1239.2 925 69.2
MELO3C016737.2 Cucumis melo HOM05D004348 ORTHO05D006191 0.0e+00 1237.6 923 70.1
PSO675G6987 Papaver somniferum HOM05D004348 ORTHO05D006191 0.0e+00 1231.5 924 68.7
THA.LOC104806947 Tarenaya hassleriana HOM05D004348 ORTHO05D006191 0.0e+00 1231.5 924 69.0
Phvul.001G020000 Phaseolus vulgaris HOM05D004348 ORTHO05D006191 0.0e+00 1230.3 927 68.5
AL7G16960 Arabidopsis lyrata HOM05D004348 ORTHO05D006191 0.0e+00 1228.0 924 69.2
PGR031G2748 Punica granatum HOM05D004348 ORTHO05D006191 0.0e+00 1227.6 925 68.9
Sc02g0006980 Simmondsia chinensis HOM05D004348 ORTHO05D006191 0.0e+00 1227.2 929 67.8
A01p04110 Brassica napus HOM05D004348 ORTHO05D006191 0.0e+00 1225.3 924 68.6
SGA_v2.0_scaffold226G43137 Striga asiatica HOM05D004348 ORTHO05D006191 0.0e+00 1225.3 933 68.9
arahy.Tifrunner.gnm1.ann1.2EEB7P Arachis hypogaea HOM05D004348 ORTHO05D006191 0.0e+00 1223.4 929 68.1
arahy.Tifrunner.gnm1.ann1.3D95JG Arachis hypogaea HOM05D004348 ORTHO05D006191 0.0e+00 1223.4 929 68.1
C01p04470 Brassica napus HOM05D004348 ORTHO05D006191 0.0e+00 1223.0 924 68.7
BraA01t00399Z Brassica rapa HOM05D004348 ORTHO05D006191 0.0e+00 1222.6 924 68.4
BolC1t00433H Brassica oleracea HOM05D004348 ORTHO05D006191 0.0e+00 1222.2 924 68.6
Lalb_Chr24g0399211 Lupinus albus HOM05D004348 ORTHO05D006191 0.0e+00 1221.8 926 67.9
AUR62039313 Chenopodium quinoa HOM05D004348 ORTHO05D006191 0.0e+00 1221.5 928 68.3
AT4G34310 Arabidopsis thaliana HOM05D004348 ORTHO05D006191 0.0e+00 1212.6 924 68.5
CANSAT78G0057 Cannabis sativa HOM05D004348 ORTHO05D006191 0.0e+00 1212.2 925 68.8
Carub.0007s0605 Capsella rubella HOM05D004348 ORTHO05D006191 0.0e+00 1210.7 924 68.0
Sp7g32110 Schrenkiella parvula HOM05D004348 ORTHO05D006191 0.0e+00 1209.9 924 68.3
Eucgr.F02367 Eucalyptus grandis HOM05D004348 ORTHO05D006191 0.0e+00 1205.3 925 67.4
VMungo0647G0261 Vigna mungo HOM05D004348 ORTHO05D006191 0.0e+00 1202.6 927 67.5
CARHR242470 Cardamine hirsuta HOM05D004348 ORTHO05D006191 0.0e+00 1200.3 924 68.0
ECA247G1923 Erigeron canadensis HOM05D004348 ORTHO05D006191 0.0e+00 1198.0 921 68.0
Psat6g012000 Pisum sativum HOM05D004348 ORTHO05D006191 0.0e+00 1196.4 943 67.3
Hund26625 Selenicereus undatus HOM05D004348 ORTHO05D006191 0.0e+00 1190.6 947 66.6
AUR62022445 Chenopodium quinoa HOM05D004348 ORTHO05D006191 0.0e+00 1186.0 930 66.5
Medtr1g019960 Medicago truncatula HOM05D004348 ORTHO05D006191 0.0e+00 1184.9 940 67.0
Glyma.14G081100 Glycine max HOM05D004348 ORTHO05D006191 0.0e+00 1182.9 894 68.7
Thhalv10024246m.g Eutrema salsugineum HOM05D004348 ORTHO05D006191 0.0e+00 1173.3 924 67.0
ClCG05G019730 Citrullus lanatus HOM05D004348 ORTHO05D006191 0.0e+00 1168.7 837 72.0
HanXRQChr02g0038751 Helianthus annuus HOM05D004348 ORTHO05D006191 0.0e+00 1142.9 924 65.7
ATR1159G040 Amborella trichopoda HOM05D004348 ORTHO05D006191 0.0e+00 1132.9 948 64.2
Aa31LG2G16180 Aethionema arabicum HOM05D004348 ORTHO05D006191 0.0e+00 1130.2 894 66.6
Glyma.17G244300 Glycine max HOM05D004348 ORTHO05D006191 0.0e+00 1120.1 861 67.5
CDE10G0798 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 0.0e+00 1116.7 946 61.5
ECA232G4920 Erigeron canadensis HOM05D004348 ORTHO05D006191 0.0e+00 1109.7 921 64.4
HanXRQChr16g0507461 Helianthus annuus HOM05D004348 ORTHO05D006191 0.0e+00 1086.2 920 63.3
TPR.G13698 Trifolium pratense HOM05D004348 ORTHO05D006191 1.5e-306 1056.2 870 65.2
Ca_13305_v3 Cicer arietinum L. HOM05D004348 ORTHO05D006191 3.3e-306 1055.0 934 62.0
Lsat_1_v5_gn_4_124060 Lactuca sativa HOM05D004348 ORTHO05D006191 1.4e-304 1049.7 942 61.3
CDE10G0919 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 1.9e-301 1039.3 933 60.2
Nitab4.5_0005301g0040 Nicotiana tabacum HOM05D004348 ORTHO05D006191 1.9e-293 1012.7 777 69.1
MBI06_g27707_MAGBIO Magnolia biondii HOM05D004348 ORTHO05D006191 1.4e-277 959.9 770 66.6
Zm00001eb006390 Zea mays HOM05D004348 ORTHO05D006191 9.3e-277 957.2 930 56.3
HPP92_019297 Vanilla planifolia HOM05D004348 ORTHO05D006191 9.6e-266 920.6 839 59.0
SHI08301 Sapria himalayana HOM05D004348 ORTHO05D006191 2.8e-241 839.3 767 59.5
Mapoly0033s0109 Marchantia polymorpha HOM05D004348 ORTHO05D006191 1.3e-214 750.7 966 45.1
unitig_26.g10059 Utricularia gibba HOM05D004348 ORTHO05D006191 2.7e-207 726.5 659 60.7
SMO144G0009 Selaginella moellendorffii HOM05D004348 ORTHO05D006191 3.6e-196 689.5 926 43.4
AagrBONN_evm.TU.Sc2ySwM_344.1636 Anthoceros agrestis HOM05D004348 ORTHO05D006191 2.3e-195 686.8 932 45.4
Haze_17559 Corylus avellana HOM05D004348 ORTHO05D006191 3.4e-194 682.9 586 61.9
Os03g0185500 Oryza sativa ssp. japonica HOM05D004348 ORTHO05D006191 7.8e-175 618.6 510 63.3
Potri.002G128201 Populus trichocarpa HOM05D004348 ORTHO05D006191 3.0e-174 616.7 462 67.7
SEGI_03031 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 2.5e-173 613.6 735 49.4
Pp3c17_5660 Physcomitrium patens HOM05D004348 ORTHO05D006191 4.3e-173 612.8 943 41.7
SEGI_07910 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 3.6e-172 609.8 557 59.2
Lsat_1_v5_gn_8_33681 Lactuca sativa HOM05D004348 ORTHO05D006191 6.7e-126 456.1 492 53.0
Lsat_1_v5_gn_1_21400 Lactuca sativa HOM05D004348 ORTHO05D006191 1.4e-110 405.2 343 65.0
Lsat_1_v5_gn_1_42721 Lactuca sativa HOM05D004348 ORTHO05D006191 1.4e-110 405.2 343 65.0
Lsat_1_v5_gn_9_17721 Lactuca sativa HOM05D004348 ORTHO05D006191 5.2e-110 403.3 333 66.7
MSTRG.22273 Avicennia marina HOM05D004348 ORTHO05D006191 1.7e-100 371.7 322 60.9
CBR_g45541 Chara braunii HOM05D004348 ORTHO05D006191 1.2e-95 355.5 972 30.1
Lsat_1_v5_gn_3_76560 Lactuca sativa HOM05D004348 ORTHO05D006191 3.9e-81 307.4 235 71.5
Lsat_1_v5_gn_4_501 Lactuca sativa HOM05D004348 ORTHO05D006191 3.9e-81 307.4 235 71.5
MSTRG.22274 Avicennia marina HOM05D004348 ORTHO05D006191 2.5e-80 304.7 172 82.6
unitig_26.g10060 Utricularia gibba HOM05D004348 ORTHO05D006191 5.6e-80 303.5 171 83.6
Lsat_1_v5_gn_2_12981 Lactuca sativa HOM05D004348 ORTHO05D006191 3.4e-77 294.3 258 65.1
SHI08298 Sapria himalayana HOM05D004348 ORTHO05D006191 4.0e-70 270.8 152 84.2
CiPaw.16G046800 Carya illinoinensis HOM05D004348 ORTHO05D006191 2.6e-69 268.1 146 87.7
MD08G1105800 Malus domestica HOM05D004348 ORTHO05D006191 1.7e-60 238.8 124 88.7
HPP92_028299 Vanilla planifolia HOM05D004348 ORTHO05D006191 1.9e-56 225.3 123 84.6
Haze_18739 Corylus avellana HOM05D004348 ORTHO05D006191 1.0e-49 203.0 175 61.1
Lsat_1_v5_gn_1_20621 Lactuca sativa HOM05D004348 ORTHO05D006191 2.0e-45 188.7 96 88.5
Cre16.g686501 Chlamydomonas reinhardtii HOM05D004348 ORTHO05D006191 2.8e-39 168.3 241 42.3
PRCOL_00001182 Prasinoderma coloniale HOM05D004348 ORTHO05D006191 2.1e-34 152.1 265 37.7
HPP92_019296 Vanilla planifolia HOM05D004348 ORTHO05D006191 6.3e-31 140.6 77 85.7
TPR.G40548 Trifolium pratense HOM05D004348 ORTHO05D006191 1.6e-26 125.9 68 85.3
Lsat_1_v5_gn_5_11760 Lactuca sativa HOM05D004348 ORTHO05D006191 1.1e-24 119.8 75 77.3
Lsat_1_v5_gn_9_67901 Lactuca sativa HOM05D004348 ORTHO05D006191 2.5e-24 118.6 100 70.0
Mapoly0064s0093 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.0e-17 96.7 235 30.2
Mapoly0031s0035 Marchantia polymorpha HOM05D004348 ORTHO05D000239 3.7e-15 88.2 241 27.4
SGA_v2.0_scaffold6G03459 Striga asiatica HOM05D004348 ORTHO05D006191 8.2e-15 87.0 46 82.6
Mapoly0064s0096 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.4e-14 85.5 149 32.9
Mapoly2546s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.1e-14 84.7 245 27.8
Mapoly0200s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 7.0e-14 84.0 239 27.6
Mapoly0200s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.0e-13 82.4 223 28.7
Mapoly0067s0036 Marchantia polymorpha HOM05D011080 ORTHO05D000239 6.5e-12 77.4 254 28.0
Sp7g06010 Schrenkiella parvula HOM05D004348 ORTHO05D006191 1.1e-11 76.6 57 66.7
Mapoly0637s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.5e-11 75.5 264 27.3
SEGI_30856 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 2.5e-11 75.5 59 61.0
Mapoly0107s0021 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.2e-11 74.7 153 30.7
Mapoly0147s0041 Marchantia polymorpha HOM05D000242 ORTHO05D000700 5.5e-11 74.3 262 28.6
Mapoly0007s0015 Marchantia polymorpha HOM05D000005 ORTHO05D000239 7.2e-11 73.9 159 32.1
Mapoly0016s0164 Marchantia polymorpha HOM05D004348 ORTHO05D000239 7.2e-11 73.9 152 31.6
Mapoly0893s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 7.2e-11 73.9 155 31.0
Mapoly1060s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 7.2e-11 73.9 155 31.0
Mapoly0049s0015 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.2e-10 73.2 154 29.9
Mapoly0147s0044 Marchantia polymorpha HOM05D000242 ORTHO05D000700 1.6e-10 72.8 265 28.7
Mapoly0041s0095 Marchantia polymorpha HOM05D011080 ORTHO05D000239 3.6e-10 71.6 178 27.5
Psat0s4914g0040 Pisum sativum HOM05D001376 ORTHO05D003384 4.7e-10 71.2 45 80.0
Cfa023648 Carpinus fangiana HOM05D012225 ORTHO05D125365 6.1e-10 70.9 212 23.6
Mapoly0067s0038 Marchantia polymorpha HOM05D000005 ORTHO05D000239 1.8e-09 69.3 154 33.1
Lsat_1_v5_gn_9_17240 Lactuca sativa HOM05D004348 ORTHO05D006191 3.0e-09 68.6 64 57.8
Mapoly0108s0045 Marchantia polymorpha HOM05D020945 ORTHO05D000713 3.9e-09 68.2 233 29.2
Mapoly0062s0120 Marchantia polymorpha HOM05D004348 ORTHO05D000239 8.8e-09 67.0 160 30.6
SGA_v2.0_scaffold162G37946 Striga asiatica HOM05D004348 ORTHO05D006191 8.8e-09 67.0 38 76.3
Pp3c24_4860 Physcomitrium patens HOM05D004348 ORTHO05D000239 2.6e-08 65.5 170 30.0
Mapoly0147s0004 Marchantia polymorpha HOM05D000242 ORTHO05D000700 3.3e-08 65.1 228 29.8
Mapoly2448s0001 Marchantia polymorpha HOM05D020945 ORTHO05D251686 5.7e-08 64.3 227 29.1
Cfa026732 Carpinus fangiana HOM05D012225 ORTHO05D124966 7.4e-08 63.9 216 25.5
Mapoly0397s0001 Marchantia polymorpha HOM05D020945 ORTHO05D253181 7.4e-08 63.9 279 25.8
Lsat_1_v5_gn_9_98160 Lactuca sativa HOM05D004348 ORTHO05D005602 1.7e-07 62.8 43 67.4
Cfa022866 Carpinus fangiana HOM05D012225 ORTHO05D125906 2.2e-07 62.4 219 24.7
Mapoly0020s0126 Marchantia polymorpha HOM05D000242 ORTHO05D000700 2.2e-07 62.4 277 26.7
Mapoly0120s0019 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.2e-07 62.4 250 26.4
Mapoly0017s0011 Marchantia polymorpha HOM05D004348 ORTHO05D006191 3.7e-07 61.6 83 42.2
Cfa025012 Carpinus fangiana HOM05D012225 ORTHO05D124848 8.2e-07 60.5 116 30.2
Mapoly0080s0029 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.4e-06 59.7 238 24.4
Mapoly0052s0114 Marchantia polymorpha HOM05D029023 ORTHO05D030122 1.8e-06 59.3 167 26.3
Mapoly0053s0005 Marchantia polymorpha HOM05D011080 ORTHO05D000239 3.1e-06 58.5 215 27.0
Mapoly0346s0002 Marchantia polymorpha HOM05D020945 ORTHO05D254421 3.1e-06 58.5 218 28.0
Mapoly0147s0001 Marchantia polymorpha HOM05D020945 ORTHO05D253211 9.1e-06 57.0 220 27.7


User provided reference genes

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