Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 4.9e-129 464.5 247 100.0
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 1.1e-101 373.6 247 78.1
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 8.8e-94 347.4 247 79.8
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.0e-93 346.3 247 74.9
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 2.2e-89 332.8 249 71.1
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 1.8e-86 323.2 250 72.0
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 5.2e-86 321.6 247 67.6
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 8.8e-86 320.9 248 68.1
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 3.4e-85 318.9 247 66.8
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.7e-84 316.6 246 67.5
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.8e-84 315.8 186 83.9
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 3.7e-84 315.5 247 66.0
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 1.1e-83 313.9 247 67.2
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.8e-83 313.2 247 65.6
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 2.4e-83 312.8 247 66.4
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 2.4e-83 312.8 254 64.2
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 3.1e-83 312.4 258 63.2
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 5.4e-83 311.6 249 66.3
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 2.0e-82 309.7 249 67.1
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 3.5e-82 308.9 247 64.4
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 4.5e-82 308.5 179 83.8
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 1.0e-81 307.4 250 63.2
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.7e-81 306.6 180 85.0
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.7e-81 306.6 247 63.6
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 2.3e-81 306.2 248 66.1
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 2.3e-81 306.2 180 85.0
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 5.0e-81 305.1 180 84.4
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 5.0e-81 305.1 247 62.8
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 8.6e-81 304.3 248 64.5
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 1.5e-80 303.5 247 62.3
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 3.3e-80 302.4 247 61.5
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 4.2e-80 302.0 252 65.9
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 5.5e-80 301.6 250 64.0
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 5.5e-80 301.6 250 64.0
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 2.1e-79 299.7 248 63.3
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 2.8e-79 299.3 247 68.0
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 3.6e-79 298.9 248 64.5
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 3.6e-79 298.9 248 64.1
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 4.7e-79 298.5 248 64.5
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 4.7e-79 298.5 248 64.1
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 6.1e-79 298.1 178 83.7
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.4e-78 297.0 248 64.5
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.8e-78 296.6 253 62.8
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 4.0e-78 295.4 247 62.8
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 8.9e-78 294.3 208 71.6
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 7.5e-77 291.2 247 59.9
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 9.8e-77 290.8 248 62.1
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 2.2e-76 289.7 247 60.7
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 2.9e-76 289.3 248 62.1
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.4e-75 287.0 235 64.3
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 2.4e-75 286.2 248 60.5
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 4.1e-75 285.4 250 61.2
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 4.1e-75 285.4 248 62.5
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 4.1e-75 285.4 248 58.9
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 5.4e-75 285.0 249 61.0
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 7.0e-75 284.6 199 71.4
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 9.2e-75 284.3 247 61.1
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 1.2e-74 283.9 255 56.1
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 1.6e-74 283.5 238 65.5
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 2.0e-74 283.1 265 58.1
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 2.7e-74 282.7 247 63.2
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 2.7e-74 282.7 248 60.1
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 2.7e-74 282.7 206 70.4
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 3.5e-74 282.3 252 61.9
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 3.5e-74 282.3 244 59.0
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 3.5e-74 282.3 247 60.7
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 4.6e-74 282.0 251 59.0
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 5.9e-74 281.6 194 70.1
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 7.8e-74 281.2 246 62.6
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 1.0e-73 280.8 198 69.7
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 1.7e-73 280.0 247 58.7
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 1.7e-73 280.0 247 58.7
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.7e-73 280.0 247 60.3
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 2.3e-73 279.6 247 62.3
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 2.3e-73 279.6 247 59.5
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 2.3e-73 279.6 247 62.3
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 5.0e-73 278.5 246 61.0
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 5.0e-73 278.5 196 70.4
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 6.6e-73 278.1 247 59.9
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 8.6e-73 277.7 251 59.8
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 1.1e-72 277.3 250 60.4
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 1.1e-72 277.3 244 58.2
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 1.9e-72 276.6 196 69.9
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 1.9e-72 276.6 196 69.9
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 2.5e-72 276.2 195 67.7
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 2.5e-72 276.2 167 79.6
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 4.3e-72 275.4 188 71.8
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 5.6e-72 275.0 196 69.4
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 5.6e-72 275.0 246 56.5
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 7.3e-72 274.6 263 56.3
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 9.5e-72 274.2 192 71.4
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 9.5e-72 274.2 248 60.9
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 1.2e-71 273.9 244 60.2
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 1.6e-71 273.5 246 61.8
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 1.6e-71 273.5 246 61.8
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.8e-71 272.7 163 83.4
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 4.7e-71 271.9 192 70.8
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 4.7e-71 271.9 192 70.8
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 8.0e-71 271.2 179 73.2
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 8.0e-71 271.2 247 58.7
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.0e-70 270.8 178 72.5
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 1.0e-70 270.8 247 61.9
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 1.4e-70 270.4 178 74.2
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 1.4e-70 270.4 192 70.8
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 2.3e-70 269.6 249 58.2
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 5.2e-70 268.5 213 66.2
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 5.2e-70 268.5 235 61.3
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 6.8e-70 268.1 249 57.8
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 8.9e-70 267.7 234 63.2
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 1.2e-69 267.3 247 58.3
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 2.0e-69 266.5 181 73.5
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 2.0e-69 266.5 184 72.8
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 3.4e-69 265.8 255 54.9
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 5.8e-69 265.0 255 55.3
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 4.9e-68 261.9 201 63.2
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 1.1e-67 260.8 176 72.7
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 2.7e-66 256.1 163 77.3
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 4.6e-66 255.4 245 56.3
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 6.0e-66 255.0 206 61.7
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 7.8e-66 254.6 229 57.6
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 7.8e-66 254.6 241 56.8
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 1.3e-65 253.8 244 55.3
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.0e-65 252.7 147 86.4
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 5.0e-65 251.9 150 82.7
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 8.6e-65 251.1 203 61.1
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 1.5e-64 250.4 178 67.4
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 2.5e-64 249.6 250 55.2
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 1.5e-61 240.4 230 60.0
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.3e-60 237.3 164 76.8
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 1.3e-60 237.3 225 57.3
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 4.9e-60 235.3 207 60.4
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 1.4e-59 233.8 219 56.2
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 4.1e-59 232.3 228 57.5
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 1.2e-58 230.7 166 68.1
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 2.1e-58 229.9 234 54.3
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 2.8e-55 219.5 185 59.5
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 4.0e-54 215.7 184 57.6
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.2e-54 215.3 132 79.5
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 5.2e-54 215.3 181 59.7
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 6.8e-54 214.9 172 59.9
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 1.3e-49 200.7 165 65.5
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.3e-48 195.7 147 72.8
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 6.0e-42 175.3 112 73.2
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 9.6e-40 167.9 209 44.5
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 8.4e-36 154.8 110 64.5
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 7.9e-34 148.3 172 44.2
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 3.3e-32 142.9 114 67.5
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 7.3e-32 141.7 208 39.4
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 7.3e-32 141.7 150 52.0
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 2.4e-30 136.7 201 39.3
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 8.4e-28 128.3 161 42.9
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.3e-25 120.2 76 76.3
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 3.4e-21 106.3 86 61.6
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 6.0e-18 95.5 100 47.0
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 2.3e-17 93.6 150 36.7
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 5.7e-08 62.4 53 50.9
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 5.7e-08 62.4 53 50.9
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 2.2e-07 60.5 63 47.6


User provided reference genes

Program Settings