Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35969 Davidia involucrata HOM05D004504 ORTHO05D005324 1.1e-109 400.2 236 100.0
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 2.0e-55 219.9 313 49.8
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 1.0e-54 217.6 299 46.8
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 6.5e-54 214.9 262 52.7
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 6.5e-54 214.9 262 52.7
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 1.2e-52 210.7 315 45.4
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 5.2e-51 205.3 270 50.0
TWI36G0477 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 6.8e-51 204.9 266 49.6
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 1.2e-50 204.1 316 45.3
Dinv39324 Davidia involucrata HOM05D004504 ORTHO05D005324 2.6e-50 203.0 221 67.9
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 2.6e-50 203.0 265 49.4
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 2.8e-49 199.5 253 50.2
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 2.8e-49 199.5 283 49.8
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 3.7e-49 199.1 291 48.8
MELO3C016744.2 Cucumis melo HOM05D004504 ORTHO05D005324 8.3e-49 198.0 254 49.6
Potri.002G127100 Populus trichocarpa HOM05D004504 ORTHO05D005324 8.3e-49 198.0 316 45.6
Duzib116G0149 Durio zibethinus HOM05D004504 ORTHO05D005324 1.4e-48 197.2 311 44.4
TAR625G1455 Trochodendron aralioides HOM05D004504 ORTHO05D005324 1.4e-48 197.2 258 52.3
Prupe.1G437500 Prunus persica HOM05D004504 ORTHO05D005324 1.8e-48 196.8 293 46.8
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 1.2e-47 194.1 255 48.6
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 1.2e-47 194.1 285 46.7
Manes.05G172300 Manihot esculenta HOM05D004504 ORTHO05D005324 1.6e-47 193.7 266 49.2
Hma1.2p1_0982F.1_g243930 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 3.5e-47 192.6 292 48.3
MSTRG.22265 Avicennia marina HOM05D004504 ORTHO05D005324 2.2e-46 189.9 281 43.8
MSTRG.24329 Avicennia marina HOM05D004504 ORTHO05D005324 2.9e-46 189.5 273 45.1
Sabra14G0022100 Salix brachista HOM05D004504 ORTHO05D005324 5.0e-46 188.7 285 46.7
FAN20G0303 Fragaria x ananassa HOM05D004504 ORTHO05D005324 1.1e-45 187.6 289 45.7
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 2.5e-45 186.4 252 48.4
CiPaw.16G045400 Carya illinoinensis HOM05D004504 ORTHO05D005324 5.5e-45 185.3 265 47.5
Manes.18G035600 Manihot esculenta HOM05D004504 ORTHO05D005324 5.5e-45 185.3 276 51.4
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 7.2e-45 184.9 285 48.1
FAN27G0025 Fragaria x ananassa HOM05D004504 ORTHO05D005324 9.4e-45 184.5 290 45.9
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 1.2e-44 184.1 289 45.3
Sabra02G0099600 Salix brachista HOM05D004504 ORTHO05D005324 6.1e-44 181.8 254 48.4
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 1.0e-43 181.0 290 45.2
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 1.8e-43 180.3 255 48.6
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 1.8e-43 180.3 270 45.9
Gohir.D05G204900 Gossypium hirsutum HOM05D004504 ORTHO05D005324 3.0e-43 179.5 310 42.3
Gohir.A05G201800 Gossypium hirsutum HOM05D004504 ORTHO05D005324 4.0e-43 179.1 310 42.3
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 4.0e-43 179.1 271 45.8
Glyma.04G038100 Glycine max HOM05D004504 ORTHO05D005324 1.2e-42 177.6 271 48.7
VMungo0647G0958 Vigna mungo HOM05D004504 ORTHO05D005324 1.2e-42 177.6 275 44.7
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 1.5e-42 177.2 270 44.8
Gorai.009G211200 Gossypium raimondii HOM05D004504 ORTHO05D005324 1.5e-42 177.2 310 42.3
TAR381G0791 Trochodendron aralioides HOM05D004504 ORTHO05D005324 1.5e-42 177.2 261 51.3
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 4.4e-42 175.6 292 44.2
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 1.3e-41 174.1 294 42.5
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 1.4e-40 170.6 292 41.1
Lj1g0007502 Lotus japonicus HOM05D004504 ORTHO05D005324 2.4e-40 169.9 259 45.9
Phvul.001G021300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 2.4e-40 169.9 265 44.9
MBI02_g02958_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 7.7e-39 164.9 255 49.8
MBI02_g17324_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 7.7e-39 164.9 255 49.8
Lalb_Chr22g0355171 Lupinus albus HOM05D004504 ORTHO05D005324 1.0e-38 164.5 287 42.5
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 1.0e-38 164.5 253 45.8
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 2.9e-38 162.9 252 44.0
Actinidia23268 Actinidia chinensis HOM05D001164 ORTHO05D001031 8.6e-38 161.4 301 45.8
MD08G1102600 Malus domestica HOM05D004504 ORTHO05D005324 8.6e-38 161.4 256 43.4
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.1e-37 161.0 252 43.7
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.9e-37 160.2 253 43.5
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 9.5e-37 157.9 253 43.5
Peaxi162Scf00064g00008 Petunia axillaris HOM05D004504 ORTHO05D005324 2.1e-36 156.8 262 43.9
Aqoxy5G01252 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 2.8e-36 156.4 264 45.5
arahy.Tifrunner.gnm1.ann1.2LG1YU Arachis hypogaea HOM05D004504 ORTHO05D005324 6.1e-36 155.2 310 41.3
MD15G1084100 Malus domestica HOM05D004504 ORTHO05D005324 8.0e-36 154.8 255 42.7
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 1.4e-35 154.1 284 42.6
Glyma.14G082300 Glycine max HOM05D004504 ORTHO05D005324 1.4e-35 154.1 271 43.2
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 3.0e-35 152.9 340 42.4
Nitab4.5_0001580g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 3.0e-35 152.9 275 43.3
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 4.0e-35 152.5 267 41.9
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 3.4e-34 149.4 264 42.4
DCAR_012769 Daucus carota HOM05D004504 ORTHO05D005324 4.4e-34 149.1 280 40.7
MBI06_g24649_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 9.8e-34 147.9 269 41.6
Glyma.17G243000 Glycine max HOM05D004504 ORTHO05D005324 1.3e-33 147.5 272 42.6
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 1.3e-33 147.5 304 37.2
Duzib041G0178 Durio zibethinus HOM05D004504 ORTHO05D005324 3.7e-33 146.0 271 39.9
SalBow7G1688 Salvia bowleyana HOM05D004504 ORTHO05D005324 4.9e-33 145.6 264 48.5
Lsat_1_v5_gn_4_125561 Lactuca sativa HOM05D004504 ORTHO05D005324 6.4e-33 145.2 340 39.1
Nn1g04891 Nelumbo nucifera HOM05D004504 ORTHO05D005324 8.3e-33 144.8 174 58.6
Peaxi162Scf00252g00123 Petunia axillaris HOM05D004504 ORTHO05D005324 2.4e-32 143.3 257 42.8
MSTRG.1340 Avicennia marina HOM05D004504 ORTHO05D005324 7.0e-32 141.7 262 45.4
Medtr3g101560 Medicago truncatula HOM05D004504 ORTHO05D005324 1.6e-31 140.6 261 42.9
Lsat_1_v5_gn_6_114061 Lactuca sativa HOM05D004504 ORTHO05D005324 2.7e-31 139.8 292 37.3
Psat6g012120 Pisum sativum HOM05D004504 ORTHO05D005324 7.8e-31 138.3 210 43.3
Lalb_Chr23g0267021 Lupinus albus HOM05D004504 ORTHO05D005324 3.0e-30 136.3 263 41.1
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.5e-29 134.0 263 42.6
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 5.6e-29 132.1 297 38.4
Medtr1g019750 Medicago truncatula HOM05D004504 ORTHO05D005324 9.5e-29 131.3 283 39.9
Lalb_Chr24g0399251 Lupinus albus HOM05D004504 ORTHO05D005324 1.6e-28 130.6 249 38.6
HanXRQChr16g0507531 Helianthus annuus HOM05D004504 ORTHO05D005324 2.8e-28 129.8 279 36.2
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 4.7e-28 129.0 305 37.0
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 4.7e-28 129.0 256 39.5
Lj4P54T34 Lonicera japonica HOM05D004504 ORTHO05D005324 1.4e-27 127.5 115 72.2
Lj4P774T14 Lonicera japonica HOM05D004504 ORTHO05D005324 1.4e-27 127.5 194 47.4
Lj5g0012770 Lotus japonicus HOM05D004504 ORTHO05D005324 1.4e-27 127.5 296 41.9
Sed0004281 Sechium edule HOM05D004504 ORTHO05D005324 1.8e-27 127.1 261 38.3
CDE02G3707 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 5.2e-27 125.6 222 41.9
Sopen12g030760 Solanum pennellii HOM05D004504 ORTHO05D005324 1.5e-26 124.0 268 41.8
PGSC0003DMG400015442 Solanum tuberosum HOM05D004504 ORTHO05D005324 3.4e-26 122.9 257 39.3
PSO210G2137 Papaver somniferum HOM05D004504 ORTHO05D005324 7.5e-26 121.7 286 39.5
PSO170G6689 Papaver somniferum HOM05D004504 ORTHO05D005324 9.8e-26 121.3 296 37.2
PSO541G3526 Papaver somniferum HOM05D004504 ORTHO05D005324 9.8e-26 121.3 256 37.9
Aa31LG9G12800 Aethionema arabicum HOM05D004504 ORTHO05D005324 1.3e-25 120.9 286 35.7
CAN.G1422.9 Capsicum annuum HOM05D000541 ORTHO05D000137 1.3e-25 120.9 324 35.2
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 1.3e-25 120.9 272 43.0
Rhsim06G0048600 Rhododendron simsii HOM05D004504 ORTHO05D005324 1.3e-25 120.9 265 42.3
AT5G42750 Arabidopsis thaliana HOM05D004504 ORTHO05D005324 1.7e-25 120.6 305 34.4
AL8G18380 Arabidopsis lyrata HOM05D004504 ORTHO05D005324 2.9e-25 119.8 304 34.5
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 4.9e-25 119.0 264 39.0
PSO675G2195 Papaver somniferum HOM05D004504 ORTHO05D005324 4.9e-25 119.0 258 38.0
RcHm_v2.0_Chr6g0307601 Rosa chinensis HOM05D004504 ORTHO05D005324 1.1e-24 117.9 119 56.3
TPR.G17544 Trifolium pratense HOM05D004504 ORTHO05D005324 2.4e-24 116.7 273 38.5
PGSC0003DMG400008020 Solanum tuberosum HOM05D004504 ORTHO05D005324 3.2e-24 116.3 298 40.3
TPR.G28115 Trifolium pratense HOM05D004504 ORTHO05D005324 5.4e-24 115.5 227 42.7
Aqoxy6G01353 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 7.0e-24 115.2 264 38.3
Carub.0008s0620 Capsella rubella HOM05D004504 ORTHO05D005324 9.2e-24 114.8 307 33.6
Solyc04g079110.1 Solanum lycopersicum HOM05D004504 ORTHO05D005324 9.2e-24 114.8 291 41.9
HPP92_016728 Vanilla planifolia HOM05D004504 ORTHO05D005324 9.2e-24 114.8 260 35.4
Thhalv10003420m.g Eutrema salsugineum HOM05D004504 ORTHO05D005324 1.6e-23 114.0 305 36.1
PGR083G0364 Punica granatum HOM05D004504 ORTHO05D005324 1.6e-23 114.0 311 37.3
Oeu057287.1 Olea europaea HOM05D004504 ORTHO05D005324 2.0e-23 113.6 188 44.7
PGR031G2315 Punica granatum HOM05D004504 ORTHO05D005324 2.0e-23 113.6 264 35.6
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 3.5e-23 112.8 252 38.9
Sopen04g032720 Solanum pennellii HOM05D004504 ORTHO05D005324 3.5e-23 112.8 297 41.4
A02p27570 Brassica napus HOM05D004504 ORTHO05D005324 7.8e-23 111.7 340 32.1
BraA02t07790Z Brassica rapa HOM05D004504 ORTHO05D005324 7.8e-23 111.7 340 32.1
CARHR181660 Cardamine hirsuta HOM05D004504 ORTHO05D005324 1.3e-22 110.9 294 32.7
BcaB07g30603 Brassica carinata HOM05D004504 ORTHO05D005324 3.9e-22 109.4 302 32.8
BolC2t10378H Brassica oleracea HOM05D004504 ORTHO05D005324 1.9e-21 107.1 306 33.7
SGA_v2.0_scaffold14G07036 Striga asiatica HOM05D004504 ORTHO05D005324 1.2e-20 104.4 147 44.2
unitig_26.g10024 Utricularia gibba HOM05D004504 ORTHO05D005324 1.2e-20 104.4 226 36.3
CDE02G0300 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 3.6e-20 102.8 258 36.8
CDE06G1443 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.1e-19 101.3 258 36.4
Atru.chr13.656 Acer truncatum HOM05D004504 ORTHO05D005324 1.4e-19 100.9 192 42.2
Actinidia22620 Actinidia chinensis HOM05D001164 ORTHO05D001031 2.3e-19 100.1 200 39.0
BcaC03g16510 Brassica carinata HOM05D004504 ORTHO05D005324 5.2e-19 99.0 303 33.0
C02p43260 Brassica napus HOM05D004504 ORTHO05D005324 5.2e-19 99.0 303 33.0
THA.LOC104804561 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 1.5e-18 97.4 257 32.3
Sp2g07370 Schrenkiella parvula HOM05D004504 ORTHO05D005324 8.3e-17 91.7 291 32.6
THA.LOC104806943 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 2.4e-16 90.1 276 31.5
unitig_899.g15623 Utricularia gibba HOM05D004504 ORTHO05D005324 2.4e-16 90.1 264 34.1
Gorai.010G018300 Gossypium raimondii HOM05D004504 ORTHO05D005324 7.1e-16 88.6 264 36.7
AUR62042173 Chenopodium quinoa HOM05D004504 ORTHO05D005324 1.6e-15 87.4 196 39.3
Oeu044838.1 Olea europaea HOM05D004504 ORTHO05D005324 1.6e-15 87.4 164 41.5
CDE09G0998 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 4.6e-15 85.9 206 36.9
GSVIVG01009517001 Vitis vinifera HOM05D004504 ORTHO05D005324 1.7e-14 84.0 51 80.4
unitig_749.g13680 Utricularia gibba HOM05D004504 ORTHO05D005324 2.3e-14 83.6 221 33.5
CDE09G1057 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 5.1e-14 82.4 205 36.1
Sc15g0006190 Simmondsia chinensis HOM05D004504 ORTHO05D005324 2.5e-13 80.1 237 34.2
Sc15g0006270 Simmondsia chinensis HOM05D004504 ORTHO05D005324 2.5e-13 80.1 237 34.2
Eucgr.F02356 Eucalyptus grandis HOM05D004504 ORTHO05D005324 7.3e-13 78.6 252 34.9
CAN.G371.30 Capsicum annuum HOM05D004504 ORTHO05D005324 9.5e-13 78.2 306 31.0
SalBow2G2132 Salvia bowleyana HOM05D004504 ORTHO05D005324 9.5e-13 78.2 103 51.5
unitig_744.g24589 Utricularia gibba HOM05D004504 ORTHO05D005324 2.8e-12 76.6 221 32.1
Nitab4.5_0007986g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 1.2e-10 71.2 213 34.3
SGA_v2.0_scaffold208G41968 Striga asiatica HOM05D004504 ORTHO05D005324 1.3e-09 67.8 269 33.8
Oeu011539.1 Olea europaea HOM05D004504 ORTHO05D005324 1.1e-08 64.7 71 57.7
Oeu011558.1 Olea europaea HOM05D004504 ORTHO05D005324 3.2e-08 63.2 50 66.0
ATR0100G018 Amborella trichopoda HOM05D004504 ORTHO05D005324 6.0e-07 58.9 54 61.1
THA.LOC109116829 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 3.9e-06 56.2 76 44.7
Zm00001eb315000 Zea mays HOM05D004504 ORTHO05D005324 3.9e-06 56.2 98 42.9
Os09g0459500 Oryza sativa ssp. japonica HOM05D004504 ORTHO05D005324 8.6e-06 55.1 68 48.5


User provided reference genes

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