Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 3.3e-141 505.0 247 100.0
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 9.4e-104 380.6 246 74.8
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 3.0e-102 375.6 243 77.0
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 5.2e-102 374.8 243 74.9
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 1.5e-101 373.2 243 76.1
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 7.4e-101 370.9 243 74.9
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 9.7e-101 370.5 243 74.1
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 2.8e-100 369.0 243 76.5
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 3.6e-95 352.1 244 70.5
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 4.7e-95 351.7 243 72.0
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 6.1e-95 351.3 246 70.7
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 1.8e-94 349.7 244 70.1
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 4.0e-94 348.6 241 71.8
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 6.8e-94 347.8 243 71.6
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 2.6e-93 345.9 244 70.9
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 3.4e-93 345.5 244 68.4
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 7.5e-93 344.4 244 68.9
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 9.8e-93 344.0 244 69.7
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.8e-92 342.4 244 68.0
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 6.3e-92 341.3 244 68.9
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 1.4e-91 340.1 245 68.6
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 4.1e-91 338.6 244 67.6
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 2.7e-90 335.9 240 70.0
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 3.5e-90 335.5 247 65.6
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 4.5e-90 335.1 230 71.3
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 7.7e-90 334.3 243 68.3
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 1.3e-89 333.6 244 66.0
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 2.2e-89 332.8 243 65.4
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 2.2e-89 332.8 242 65.3
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 3.8e-89 332.0 247 69.2
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 5.0e-89 331.6 250 65.2
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 1.9e-88 329.7 247 67.2
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 1.9e-88 329.7 249 65.5
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 2.5e-88 329.3 242 66.9
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 3.2e-88 328.9 249 65.5
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 7.2e-88 327.8 244 66.0
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 9.4e-88 327.4 245 66.1
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 1.6e-87 326.6 240 67.9
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 2.1e-87 326.2 247 66.8
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 2.7e-87 325.9 243 67.5
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 8.0e-87 324.3 243 63.8
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 1.0e-86 323.9 247 71.3
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 1.0e-86 323.9 247 66.0
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 1.0e-86 323.9 249 64.7
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 4.0e-86 322.0 257 66.5
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 1.5e-85 320.1 245 64.1
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 2.0e-85 319.7 248 64.9
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 2.0e-85 319.7 243 64.2
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.6e-85 319.3 252 68.3
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 3.4e-85 318.9 252 67.9
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 3.4e-85 318.9 252 68.3
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 3.4e-85 318.9 252 67.9
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 4.4e-85 318.5 243 63.8
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 4.4e-85 318.5 245 67.8
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 4.4e-85 318.5 245 69.8
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 1.3e-84 317.0 249 63.5
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 1.3e-84 317.0 240 66.2
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 2.2e-84 316.2 249 65.1
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 2.8e-84 315.8 244 63.5
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 3.7e-84 315.5 248 66.5
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 3.7e-84 315.5 248 64.9
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 8.3e-84 314.3 242 64.5
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.4e-83 313.5 248 64.5
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 2.4e-83 312.8 279 58.4
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 3.1e-83 312.4 245 64.5
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 3.1e-83 312.4 247 64.8
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 5.4e-83 311.6 253 64.0
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 1.2e-82 310.5 243 62.6
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 1.6e-82 310.1 242 64.0
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.0e-82 309.7 248 64.1
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 3.5e-82 308.9 248 64.9
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 4.5e-82 308.5 243 64.2
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 1.0e-81 307.4 242 62.0
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 1.0e-81 307.4 256 62.9
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 1.7e-81 306.6 227 67.0
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.3e-81 306.2 246 65.4
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.3e-81 306.2 246 65.4
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 3.8e-81 305.4 245 61.6
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 6.6e-81 304.7 244 62.3
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 1.1e-80 303.9 244 62.3
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 1.5e-80 303.5 246 62.6
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 2.5e-80 302.8 229 65.1
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 3.3e-80 302.4 246 60.6
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 3.3e-80 302.4 246 61.8
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 4.2e-80 302.0 245 60.8
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 4.2e-80 302.0 169 84.6
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 5.5e-80 301.6 244 62.7
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 1.2e-79 300.4 171 83.0
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 1.6e-79 300.1 237 64.1
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 2.8e-79 299.3 249 59.4
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 3.6e-79 298.9 246 63.0
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 4.7e-79 298.5 244 59.0
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 6.1e-79 298.1 246 58.9
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 8.0e-79 297.7 246 59.8
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 8.0e-79 297.7 243 59.3
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 1.4e-78 297.0 240 63.8
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 1.4e-78 297.0 240 63.8
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 2.3e-78 296.2 243 59.7
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 2.3e-78 296.2 252 61.9
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 8.9e-78 294.3 244 62.3
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 1.5e-77 293.5 245 61.6
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 2.6e-77 292.7 244 57.8
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 4.4e-77 292.0 245 59.6
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 1.7e-76 290.0 244 59.4
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 3.7e-76 288.9 210 68.6
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 3.7e-76 288.9 243 58.0
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 1.8e-75 286.6 243 58.4
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 5.9e-74 281.6 215 63.3
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 1.0e-73 280.8 250 58.0
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 1.3e-73 280.4 245 56.7
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 1.7e-73 280.0 168 78.0
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 3.9e-73 278.9 248 63.3
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 5.0e-73 278.5 245 58.8
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 8.6e-73 277.7 234 57.7
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 1.1e-72 277.3 250 57.6
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 7.3e-72 274.6 247 58.7
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 1.2e-71 273.9 244 56.1
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 1.2e-71 273.9 219 65.8
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 2.1e-71 273.1 249 57.8
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 1.4e-70 270.4 205 66.3
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 3.1e-70 269.2 219 63.5
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 4.0e-70 268.9 246 56.1
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.0e-69 266.5 243 56.4
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 4.4e-69 265.4 244 55.7
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 8.3e-68 261.2 220 62.7
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 1.3e-65 253.8 155 79.4
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 3.9e-65 252.3 137 85.4
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 3.9e-65 252.3 218 59.2
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 2.1e-63 246.5 244 56.1
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 1.2e-61 240.7 191 63.4
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 2.2e-60 236.5 244 52.9
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 5.4e-59 231.9 199 55.8
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.6e-58 230.3 243 53.9
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 6.0e-58 228.4 171 62.0
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 5.1e-57 225.3 256 50.4
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 2.1e-55 219.9 247 50.2
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 2.0e-53 213.4 165 59.4
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 7.6e-53 211.5 170 57.1
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 1.1e-51 207.6 163 58.9
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.4e-51 207.2 153 67.3
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 7.1e-51 204.9 165 57.6
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 4.6e-50 202.2 167 55.7
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 7.8e-50 201.4 136 66.9
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 1.9e-48 196.8 111 80.2
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 6.9e-38 161.8 213 43.7
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 2.7e-34 149.8 100 77.0
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 6.0e-34 148.7 136 57.4
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 1.0e-33 147.9 91 76.9
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 3.3e-32 142.9 84 78.6
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 2.1e-31 140.2 110 60.9
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 4.8e-31 139.0 144 53.5
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 7.6e-29 131.7 216 33.3
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 7.9e-26 121.7 78 76.9
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 4.3e-24 115.9 63 84.1
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.6e-23 114.0 73 68.5
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 6.2e-23 112.1 73 71.2
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 2.4e-22 110.2 141 40.4
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 2.5e-19 100.1 67 67.2
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 7.4e-16 88.6 53 73.6
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 2.6e-13 80.1 48 72.9
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 5.9e-13 79.0 70 52.9
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 7.6e-13 78.6 51 68.6
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 6.5e-12 75.5 51 66.7
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 6.5e-12 75.5 51 66.7
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 3.2e-11 73.2 39 76.9
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.9e-09 66.2 43 69.8
arahy.Tifrunner.gnm1.ann1.KE27EQ Arachis hypogaea HOM05D004168 ORTHO05D004999 6.9e-06 55.5 64 43.8


User provided reference genes

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