Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35828 Davidia involucrata HOM05D005900 ORTHO05D007306 1.1e-125 453.4 233 100.0
Dinv16498 Davidia involucrata HOM05D005900 ORTHO05D007306 1.5e-95 353.2 212 89.2
Hma1.2p1_1494F.1_g286930 Hydrangea macrophylla HOM05D005900 ORTHO05D007306 6.9e-72 274.6 238 64.7
Oeu055297.1 Olea europaea HOM05D005900 ORTHO05D007306 4.4e-71 271.9 231 64.5
CSS0005312 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 2.4e-69 266.2 229 65.1
vmacro15379 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 4.2e-69 265.4 256 60.2
TAR371G1211 Trochodendron aralioides HOM05D005900 ORTHO05D007306 6.6e-67 258.1 247 59.9
Rhsim12G0016500 Rhododendron simsii HOM05D005900 ORTHO05D007306 1.5e-66 256.9 234 61.1
GSVIVG01001102001 Vitis vinifera HOM05D005900 ORTHO05D007306 1.5e-66 256.9 233 60.5
Nitab4.5_0000059g0460 Nicotiana tabacum HOM05D005900 ORTHO05D007306 4.5e-63 245.4 236 61.0
CANSAT80G1963 Cannabis sativa HOM05D005900 ORTHO05D007306 4.9e-62 241.9 224 59.8
CANSAT80G1771 Cannabis sativa HOM05D005900 ORTHO05D007306 1.4e-61 240.4 224 59.8
Nitab4.5_0000191g0220 Nicotiana tabacum HOM05D005900 ORTHO05D007306 2.4e-61 239.6 236 59.7
TAR629G1598 Trochodendron aralioides HOM05D005900 ORTHO05D007306 3.9e-59 232.3 236 57.2
Oeu001539.2 Olea europaea HOM05D005900 ORTHO05D007306 5.1e-59 231.9 279 51.6
Cc04_g15880 Coffea canephora HOM05D005900 ORTHO05D007306 2.5e-58 229.6 223 58.3
MSTRG.22403 Avicennia marina HOM05D005900 ORTHO05D007306 2.1e-57 226.5 235 54.5
QL03p048972 Quercus lobata HOM05D005900 ORTHO05D007306 2.8e-57 226.1 235 57.0
Cpa.g.sc36.199 Carica papaya HOM05D005900 ORTHO05D007306 1.4e-56 223.8 246 53.3
DCAR_030841 Daucus carota HOM05D005900 ORTHO05D007306 2.0e-55 219.9 222 55.9
Sopen09g004610 Solanum pennellii HOM05D005900 ORTHO05D007306 3.4e-55 219.2 236 55.5
Atru.chr12.1436 Acer truncatum HOM05D005900 ORTHO05D007306 4.5e-55 218.8 226 54.4
PGR102G3094 Punica granatum HOM05D005900 ORTHO05D007306 4.5e-55 218.8 229 55.0
PGSC0003DMG400008953 Solanum tuberosum HOM05D005900 ORTHO05D007306 7.6e-55 218.0 236 55.1
Peaxi162Scf00698g00117 Petunia axillaris HOM05D005900 ORTHO05D007306 1.7e-54 216.9 236 54.7
Solyc09g009850.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 2.9e-54 216.1 236 54.7
CiPaw.05G100400 Carya illinoinensis HOM05D005900 ORTHO05D007306 3.8e-54 215.7 213 58.7
PGSC0003DMG400022718 Solanum tuberosum HOM05D005900 ORTHO05D007306 3.8e-54 215.7 239 54.8
SGA_v2.0_scaffold28G11983 Striga asiatica HOM05D005900 ORTHO05D007306 1.9e-53 213.4 232 55.2
SGA_v2.0_scaffold154G37193 Striga asiatica HOM05D005900 ORTHO05D007306 2.4e-53 213.0 232 54.7
vmacro01013 Vaccinium macrocarpon HOM05D005900 ORTHO05D007306 2.1e-52 209.9 282 48.2
Eucgr.B02910 Eucalyptus grandis HOM05D005900 ORTHO05D007306 2.7e-52 209.5 238 50.8
CsaV3_4G033440 Cucumis sativus L. HOM05D005900 ORTHO05D007306 3.5e-52 209.1 248 50.8
TWI36G0396 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 6.0e-52 208.4 215 55.8
Prupe.1G213900 Prunus persica HOM05D005900 ORTHO05D007306 1.0e-51 207.6 214 56.1
Peaxi162Scf00079g01513 Petunia axillaris HOM05D005900 ORTHO05D007306 3.9e-51 205.7 252 52.0
Solyc01g008760.4 Solanum lycopersicum HOM05D005900 ORTHO05D007306 5.6e-50 201.8 237 52.3
Potri.001G068500 Populus trichocarpa HOM05D005900 ORTHO05D007306 2.8e-49 199.5 220 54.1
Sabra01G0047700 Salix brachista HOM05D005900 ORTHO05D007306 4.8e-49 198.7 220 53.6
CSS0033783 Camellia sinensis var. sinensis HOM05D005900 ORTHO05D007306 2.4e-48 196.4 161 69.6
CiPaw.03G184600 Carya illinoinensis HOM05D005900 ORTHO05D007306 2.4e-48 196.4 187 59.4
SalBow2G0170 Salvia bowleyana HOM05D005900 ORTHO05D007306 2.4e-48 196.4 233 51.5
Ciclev10005823m.g Citrus clementina HOM05D005900 ORTHO05D007306 3.1e-48 196.1 230 50.9
Thecc.02G191100 Theobroma cacao HOM05D005900 ORTHO05D007306 4.0e-48 195.7 235 54.0
Cfa011664 Carpinus fangiana HOM05D005900 ORTHO05D007306 9.0e-48 194.5 235 52.3
Eucgr.E01503 Eucalyptus grandis HOM05D005900 ORTHO05D007306 1.2e-47 194.1 239 51.0
Haze_24259 Corylus avellana HOM05D005900 ORTHO05D007306 4.5e-47 192.2 235 53.6
Migut.C00405 Erythranthe guttata HOM05D005900 ORTHO05D007306 1.3e-46 190.7 224 51.8
Lsat_1_v5_gn_2_95001 Lactuca sativa HOM05D005900 ORTHO05D007306 1.3e-46 190.7 231 48.9
Cfa010215 Carpinus fangiana HOM05D005900 ORTHO05D007306 1.7e-46 190.3 235 52.3
Migut.C01115 Erythranthe guttata HOM05D005900 ORTHO05D007306 2.2e-46 189.9 223 52.0
TWI18G0365 Tripterygium wilfordii HOM05D005900 ORTHO05D007306 3.8e-46 189.1 219 50.2
RcHm_v2.0_Chr4g0428761 Rosa chinensis HOM05D005900 ORTHO05D007306 7.1e-45 184.9 234 47.4
Gorai.002G021100 Gossypium raimondii HOM05D005900 ORTHO05D007306 1.6e-44 183.7 223 48.9
MBI11_g07033_MAGBIO Magnolia biondii HOM05D005900 ORTHO05D007306 1.6e-44 183.7 237 48.5
Hund20854 Selenicereus undatus HOM05D005900 ORTHO05D007306 4.6e-44 182.2 228 50.4
Gohir.D01G018900 Gossypium hirsutum HOM05D005900 ORTHO05D007306 1.3e-43 180.6 223 48.4
ClCG11G017800 Citrullus lanatus HOM05D005900 ORTHO05D007306 2.3e-43 179.9 242 46.3
COL.COLO4_27171 Corchorus olitorius HOM05D005900 ORTHO05D007306 3.0e-43 179.5 243 47.3
ECA238G4295 Erigeron canadensis HOM05D005900 ORTHO05D007306 8.7e-43 177.9 189 57.1
AUR62006518 Chenopodium quinoa HOM05D005900 ORTHO05D007306 7.4e-42 174.9 228 48.7
AUR62025013 Chenopodium quinoa HOM05D005900 ORTHO05D007306 7.4e-42 174.9 228 48.7
MD13G1131700 Malus domestica HOM05D005900 ORTHO05D007306 1.6e-41 173.7 205 51.7
Sc06g0007790 Simmondsia chinensis HOM05D005900 ORTHO05D007306 2.8e-41 172.9 227 48.0
EL10Ac1g01696 Beta vulgaris HOM05D005900 ORTHO05D007306 4.8e-41 172.2 221 50.2
MD16G1142000 Malus domestica HOM05D005900 ORTHO05D007306 6.3e-41 171.8 205 50.2
Sed0015511 Sechium edule HOM05D005900 ORTHO05D007306 8.2e-41 171.4 233 45.5
PSO170G6181 Papaver somniferum HOM05D005900 ORTHO05D007306 9.0e-40 167.9 210 48.1
CDE09G0879 Ceratophyllum demersum HOM05D005900 ORTHO05D007306 2.0e-39 166.8 225 47.1
Gohir.A01G020300 Gossypium hirsutum HOM05D005900 ORTHO05D007306 2.0e-39 166.8 223 45.7
FAN07G0479 Fragaria x ananassa HOM05D005900 ORTHO05D007306 8.5e-38 161.4 229 45.4
PSO017G3279 Papaver somniferum HOM05D005900 ORTHO05D007306 4.2e-37 159.1 205 46.8
FvH4_4g22530 Fragaria vesca HOM05D005900 ORTHO05D007306 5.5e-37 158.7 229 44.5
FAN12G4206 Fragaria x ananassa HOM05D005900 ORTHO05D007306 5.5e-37 158.7 229 44.5
FAN17G1441 Fragaria x ananassa HOM05D005900 ORTHO05D007306 2.3e-35 153.3 171 51.5
Lalb_Chr15g0079851 Lupinus albus HOM05D005900 ORTHO05D007306 3.0e-35 152.9 230 44.3
Os01g0259900 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 3.7e-33 146.0 239 41.8
THA.LOC104799437 Tarenaya hassleriana HOM05D005900 ORTHO05D007306 6.3e-33 145.2 185 47.0
Ca_13888_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 1.4e-32 144.1 230 41.7
Duzib052G0736 Durio zibethinus HOM05D005900 ORTHO05D007306 1.4e-32 144.1 251 41.0
Aa31LG1G17260 Aethionema arabicum HOM05D005900 ORTHO05D007306 2.4e-32 143.3 225 44.4
Ca_23210_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 3.1e-32 142.9 230 41.7
Os08g0422600 Oryza sativa ssp. japonica HOM05D005900 ORTHO05D007306 1.5e-31 140.6 229 42.4
Sp2g27740 Schrenkiella parvula HOM05D005900 ORTHO05D007306 3.4e-31 139.4 225 43.6
Lj3g0021746 Lotus japonicus HOM05D005900 ORTHO05D007306 1.3e-30 137.5 226 40.7
Zm00001eb127900 Zea mays HOM05D005900 ORTHO05D007306 1.1e-29 134.4 231 42.4
arahy.Tifrunner.gnm1.ann1.UQH0GN Arachis hypogaea HOM05D005900 ORTHO05D007306 1.4e-29 134.0 237 38.8
Glyma.07G200400 Glycine max HOM05D005900 ORTHO05D007306 1.9e-29 133.7 226 43.4
Glyma.13G175800 Glycine max HOM05D005900 ORTHO05D007306 1.9e-29 133.7 226 42.5
arahy.Tifrunner.gnm1.ann1.5NZU5R Arachis hypogaea HOM05D005900 ORTHO05D007306 5.5e-29 132.1 237 38.8
Manes.08G100300 Manihot esculenta HOM05D005900 ORTHO05D007306 9.4e-29 131.3 227 38.8
MELO3C032361.2 Cucumis melo HOM05D005900 ORTHO05D007306 2.1e-28 130.2 188 47.9
TPR.G16445 Trifolium pratense HOM05D005900 ORTHO05D007306 2.7e-28 129.8 226 38.9
VMungo0331G1117 Vigna mungo HOM05D005900 ORTHO05D007306 3.6e-28 129.4 226 41.6
BraA02t09265Z Brassica rapa HOM05D005900 ORTHO05D007306 4.7e-28 129.0 223 43.0
Psat4g204640 Pisum sativum HOM05D005900 ORTHO05D007306 4.7e-28 129.0 225 41.3
A02p43400 Brassica napus HOM05D005900 ORTHO05D007306 1.4e-27 127.5 223 42.6
VMungo0251G3272 Vigna mungo HOM05D005900 ORTHO05D007306 1.4e-27 127.5 226 41.6
BcaC03g18270 Brassica carinata HOM05D005900 ORTHO05D007306 2.3e-27 126.7 219 41.6
C02p63500 Brassica napus HOM05D005900 ORTHO05D007306 3.9e-27 125.9 223 42.6
BolC2t12415H Brassica oleracea HOM05D005900 ORTHO05D007306 1.1e-26 124.4 224 42.4
Medtr8g012410 Medicago truncatula HOM05D005900 ORTHO05D007306 1.1e-26 124.4 229 39.3
BcaB07g29751 Brassica carinata HOM05D005900 ORTHO05D007306 2.0e-26 123.6 223 43.0
Lj6g0004130 Lotus japonicus HOM05D005900 ORTHO05D007306 5.7e-26 122.1 232 40.5
Thhalv10004934m.g Eutrema salsugineum HOM05D005900 ORTHO05D007306 1.7e-25 120.6 224 42.9
C03p61480 Brassica napus HOM05D005900 ORTHO05D007306 4.8e-25 119.0 222 39.2
BcaC08g46818 Brassica carinata HOM05D005900 ORTHO05D007306 8.2e-25 118.2 148 45.9
Aqoxy4G02969 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 1.1e-24 117.9 178 39.9
BolC6t39862H Brassica oleracea HOM05D005900 ORTHO05D007306 2.4e-24 116.7 161 44.1
Phvul.002G231200 Phaseolus vulgaris HOM05D005900 ORTHO05D007306 2.0e-23 113.6 225 39.1
Cc04_g15860 Coffea canephora HOM05D005900 ORTHO05D007306 1.1e-21 107.8 80 60.0
Ca_13890_v3 Cicer arietinum L. HOM05D005900 ORTHO05D007306 5.5e-21 105.5 99 52.5
AL8G42100 Arabidopsis lyrata HOM05D005900 ORTHO05D007306 3.6e-20 102.8 225 36.0
ATR0582G041 Amborella trichopoda HOM05D005900 ORTHO05D007306 6.7e-19 98.6 222 36.0
BcaB04g19984 Brassica carinata HOM05D005900 ORTHO05D007306 5.7e-18 95.5 152 38.8
unitig_747.g21266 Utricularia gibba HOM05D005900 ORTHO05D007306 2.2e-17 93.6 218 33.5
Aqoxy83s001 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 6.3e-17 92.0 144 41.0
Aqoxy4G03322 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 8.2e-17 91.7 126 42.1
Haze_23070 Corylus avellana HOM05D005900 ORTHO05D007306 1.8e-16 90.5 186 41.9
AT5G64680 Arabidopsis thaliana HOM05D005900 ORTHO05D007306 4.1e-16 89.4 182 36.8
Carub.0008s2548 Capsella rubella HOM05D005900 ORTHO05D007306 4.1e-16 89.4 186 37.1
Atru.chr12.1335 Acer truncatum HOM05D005900 ORTHO05D007306 2.2e-14 83.6 62 58.1
Aqoxy2G04193 Aquilegia oxysepala HOM05D005900 ORTHO05D007306 8.5e-14 81.6 113 41.6
SEGI_10970 Sequoiadendron giganteum HOM05D005900 ORTHO05D007306 9.7e-10 68.2 230 31.3
CARHR278660 Cardamine hirsuta HOM05D005900 ORTHO05D007306 2.4e-08 63.5 227 32.6
Nn3g20876 Nelumbo nucifera HOM05D005900 ORTHO05D007306 1.2e-07 61.2 40 60.0


User provided reference genes

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