Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 8.7e-290 999.6 503 100.0
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 6.1e-243 844.0 503 84.9
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 4.0e-242 841.3 489 85.1
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 4.7e-235 817.8 485 83.7
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 6.1e-235 817.4 498 81.7
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 1.0e-234 816.6 490 81.8
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 9.8e-233 810.1 494 81.0
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 9.8e-233 810.1 496 80.4
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 4.9e-232 807.7 495 81.6
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 9.2e-231 803.5 488 81.1
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 5.0e-229 797.7 493 80.1
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 9.5e-228 793.5 499 79.8
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.6e-227 791.6 489 81.6
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 4.7e-227 791.2 495 80.2
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 8.0e-227 790.4 485 82.3
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.0e-226 790.0 489 81.4
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 1.4e-226 789.6 489 81.0
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.8e-226 789.3 488 81.4
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 5.2e-226 787.7 496 79.4
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 6.8e-226 787.3 512 78.1
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 1.2e-225 786.6 482 81.1
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 2.6e-225 785.4 492 79.3
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 5.7e-225 784.3 498 79.5
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 9.8e-225 783.5 497 78.7
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 6.4e-224 780.8 502 78.3
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 1.1e-223 780.0 495 78.4
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 1.2e-222 776.5 484 79.1
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 3.5e-222 775.0 486 78.4
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 5.9e-222 774.2 495 77.4
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 7.8e-222 773.9 484 79.1
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 1.0e-221 773.5 495 77.4
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 1.0e-221 773.5 498 76.3
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 1.0e-221 773.5 498 76.3
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 1.3e-221 773.1 487 78.9
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 3.0e-221 771.9 498 76.3
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 1.5e-220 769.6 492 77.4
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.5e-220 769.6 484 78.5
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 1.5e-220 769.6 499 78.6
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 2.5e-220 768.8 501 77.6
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 5.6e-220 767.7 533 75.6
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 5.6e-220 767.7 485 78.8
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 7.3e-220 767.3 495 77.8
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 7.3e-220 767.3 496 77.6
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 9.5e-220 766.9 493 79.3
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 9.5e-220 766.9 493 79.3
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.2e-219 766.5 484 78.3
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 2.1e-219 765.8 484 78.7
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 1.4e-218 763.1 498 76.1
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 1.4e-218 763.1 489 76.5
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 1.8e-218 762.7 489 78.1
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 2.3e-218 762.3 492 76.6
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 2.3e-218 762.3 491 77.2
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 1.5e-217 759.6 513 75.0
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 2.6e-217 758.8 485 77.5
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 2.6e-217 758.8 480 78.8
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 5.8e-217 757.7 524 73.7
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 1.7e-216 756.1 482 77.6
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 4.9e-216 754.6 496 76.8
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 1.4e-215 753.1 485 77.3
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 4.1e-215 751.5 485 77.5
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 4.1e-215 751.5 485 77.5
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 9.2e-215 750.4 490 76.3
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 1.3e-213 746.5 496 75.2
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 3.9e-213 745.0 499 74.1
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 5.0e-213 744.6 491 74.5
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 6.6e-213 744.2 496 74.8
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 6.6e-213 744.2 491 74.9
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 1.1e-212 743.4 498 73.5
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 1.5e-212 743.0 499 73.7
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 1.5e-212 743.0 499 73.7
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 1.5e-212 743.0 498 73.5
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 1.9e-212 742.7 490 75.9
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 2.5e-212 742.3 500 74.6
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 1.2e-211 740.0 496 74.8
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 1.6e-211 739.6 494 74.3
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 4.7e-211 738.0 489 73.6
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 4.7e-211 738.0 496 74.2
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 6.2e-211 737.6 513 71.9
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 6.2e-211 737.6 491 74.5
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 8.1e-211 737.3 492 74.8
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 2.3e-210 735.7 496 73.4
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 5.2e-210 734.6 492 74.2
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 5.2e-210 734.6 496 74.2
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 1.2e-209 733.4 492 73.2
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 1.5e-209 733.0 495 73.9
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 1.5e-209 733.0 454 80.2
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 2.0e-209 732.6 492 75.0
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 3.4e-209 731.9 495 74.1
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 3.4e-209 731.9 499 74.3
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 4.4e-209 731.5 484 76.0
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 9.8e-209 730.3 494 73.9
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 1.7e-208 729.6 491 75.6
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 2.9e-208 728.8 498 73.3
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 3.7e-208 728.4 487 77.4
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 1.9e-207 726.1 496 73.8
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 4.1e-207 724.9 507 71.6
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 1.1e-204 716.8 501 72.5
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 2.1e-203 712.6 504 70.8
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 8.1e-203 710.7 495 72.7
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 5.2e-202 708.0 488 72.5
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 3.4e-201 705.3 490 72.4
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 6.4e-200 701.0 514 70.2
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 7.8e-198 694.1 491 71.7
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 3.9e-197 691.8 489 70.3
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 1.5e-196 689.9 498 72.3
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 2.5e-196 689.1 491 72.1
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 7.3e-196 687.6 583 60.9
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 2.1e-195 686.0 492 69.9
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 3.1e-194 682.2 491 69.2
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 5.2e-194 681.4 490 70.0
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 6.9e-194 681.0 570 63.3
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 1.5e-193 679.9 494 68.4
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.9e-191 672.9 502 71.1
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 3.5e-190 668.7 496 67.7
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 1.7e-189 666.4 526 66.2
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 1.3e-187 660.2 492 66.7
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 3.1e-186 655.6 400 82.5
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 3.1e-186 655.6 490 69.4
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 3.4e-185 652.1 497 63.4
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 7.6e-185 651.0 508 63.0
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 2.1e-182 642.9 490 67.6
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 2.1e-182 642.9 466 70.6
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.0e-181 640.6 512 67.6
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 2.8e-179 632.5 497 65.0
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 9.9e-177 624.0 493 64.5
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 1.4e-162 577.0 457 61.3
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 2.4e-162 576.2 381 76.4
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 2.7e-158 562.8 532 55.5
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 3.9e-157 558.9 549 56.6
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 6.7e-157 558.1 359 77.7
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.9e-156 556.6 342 81.3
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 2.5e-156 556.2 402 71.1
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.8e-155 552.7 399 74.4
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 3.4e-153 545.8 371 76.0
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 7.7e-153 544.7 495 57.0
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 6.7e-149 531.6 394 69.0
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 1.4e-143 513.8 364 72.8
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 7.2e-143 511.5 367 71.4
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.1e-130 471.1 308 77.9
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.2e-126 457.6 406 63.3
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.0e-125 453.0 280 80.4
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 1.5e-124 450.7 469 51.6
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 1.7e-123 447.2 275 81.8
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.3e-120 436.8 272 80.9
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 2.5e-119 433.3 307 71.7
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 2.6e-100 370.2 233 78.1
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 2.8e-86 323.6 252 69.4
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.0e-84 317.4 186 83.9
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 1.9e-82 310.8 476 38.4
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.8e-78 297.0 180 82.2
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 6.2e-78 295.8 204 74.5
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 9.6e-71 271.9 200 66.5
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 2.3e-56 224.2 235 54.0
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 8.7e-56 222.2 327 43.7
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 6.9e-53 212.6 137 75.2
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 9.0e-53 212.2 153 72.5
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 1.5e-52 211.5 132 78.0
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 4.9e-51 206.5 296 48.0
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 8.4e-51 205.7 126 78.6
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 6.0e-49 199.5 133 74.4
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 7.4e-47 192.6 116 80.2
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.4e-42 178.3 116 76.7
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 8.8e-40 169.1 147 57.8
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 2.5e-39 167.5 92 83.7
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 2.5e-39 167.5 92 83.7
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 1.1e-31 142.1 205 40.5
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 1.9e-26 124.8 97 69.1
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 4.7e-25 120.2 76 80.3
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 2.3e-24 117.9 64 84.4
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 1.1e-23 115.5 63 87.3
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 1.3e-22 112.1 72 80.6
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 1.7e-22 111.7 67 77.6
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 1.8e-21 108.2 98 60.2
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 4.1e-21 107.1 191 40.8
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 2.2e-19 101.3 65 80.0
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 5.0e-19 100.1 65 76.9
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.9e-18 98.2 65 75.4
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.2e-17 95.5 65 72.3
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 3.3e-15 87.4 77 62.3
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 9.1e-13 79.3 46 76.1
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 7.2e-10 69.7 37 81.1
RcHm_v2.0_Chr5g0019801 Rosa chinensis HOM05D003643 ORTHO05D005001 2.6e-07 61.2 48 70.8
QL04p096498 Quercus lobata HOM05D000005 ORTHO05D000012 2.8e-06 57.8 64 56.2


User provided reference genes

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