Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 1.1e-115 419.9 201 100.0
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 4.2e-78 295.0 162 85.2
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 9.1e-65 250.8 155 76.1
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 1.1e-62 243.8 163 70.6
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 1.5e-62 243.4 164 72.0
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 3.3e-62 242.3 162 69.1
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 4.7e-61 238.4 160 69.4
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 4.7e-61 238.4 161 69.6
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 4.0e-60 235.3 161 70.2
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 3.4e-59 232.3 162 67.9
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 1.3e-58 230.3 168 64.3
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 1.7e-58 229.9 163 66.3
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 2.8e-58 229.2 161 70.2
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 4.9e-58 228.4 161 64.0
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 1.4e-57 226.9 159 64.8
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 2.4e-57 226.1 170 63.5
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 4.1e-57 225.3 156 67.3
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 9.2e-57 224.2 139 74.8
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 9.2e-57 224.2 161 68.3
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 1.2e-56 223.8 160 68.8
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 1.6e-56 223.4 164 65.2
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 3.5e-56 222.2 164 67.1
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 3.5e-56 222.2 143 69.9
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 4.5e-56 221.9 134 74.6
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 7.8e-56 221.1 148 68.9
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 7.8e-56 221.1 136 75.7
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 1.0e-55 220.7 132 75.0
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 2.9e-55 219.2 148 67.6
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 3.8e-55 218.8 138 72.5
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 8.6e-55 217.6 147 68.7
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 1.1e-54 217.2 144 68.8
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 2.5e-54 216.1 160 67.5
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 2.5e-54 216.1 153 66.0
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 2.5e-54 216.1 147 68.7
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 3.3e-54 215.7 160 66.9
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 7.3e-54 214.5 161 64.6
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 1.2e-53 213.8 164 61.6
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 1.2e-53 213.8 152 65.8
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 1.6e-53 213.4 148 66.9
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 3.6e-53 212.2 161 61.5
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 3.6e-53 212.2 151 64.9
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 3.6e-53 212.2 162 64.2
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 8.0e-53 211.1 136 69.9
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 1.0e-52 210.7 146 67.1
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 1.0e-52 210.7 154 64.3
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 2.3e-52 209.5 159 62.3
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 3.1e-52 209.1 159 63.5
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 4.0e-52 208.8 160 66.9
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 4.0e-52 208.8 153 64.1
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 4.0e-52 208.8 130 71.5
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 5.2e-52 208.4 149 66.4
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 5.2e-52 208.4 147 63.9
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 6.8e-52 208.0 176 61.4
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 6.8e-52 208.0 161 65.2
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 1.2e-51 207.2 145 66.9
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 1.5e-51 206.8 154 64.3
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 2.0e-51 206.5 149 63.8
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 2.6e-51 206.1 127 70.9
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 2.6e-51 206.1 154 63.6
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 4.4e-51 205.3 146 65.8
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 5.8e-51 204.9 123 73.2
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 7.5e-51 204.5 154 62.3
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 9.8e-51 204.1 160 63.1
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 9.8e-51 204.1 151 63.6
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 9.8e-51 204.1 154 63.6
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 1.3e-50 203.8 127 70.1
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 1.3e-50 203.8 143 67.8
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 1.7e-50 203.4 154 62.3
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 1.7e-50 203.4 137 68.6
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 2.2e-50 203.0 163 59.5
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 3.7e-50 202.2 146 65.8
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 3.7e-50 202.2 151 61.6
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 8.3e-50 201.1 142 65.5
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 4.1e-49 198.7 162 57.4
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 5.4e-49 198.4 150 61.3
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 5.4e-49 198.4 157 61.8
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 7.0e-49 198.0 162 62.3
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 9.2e-49 197.6 149 63.1
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 1.2e-48 197.2 162 57.4
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 1.6e-48 196.8 140 67.1
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 2.0e-48 196.4 155 61.3
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 2.0e-48 196.4 155 61.3
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 2.0e-48 196.4 146 63.7
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 2.0e-48 196.4 159 59.7
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 6.0e-48 194.9 128 68.0
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 7.8e-48 194.5 149 62.4
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 7.8e-48 194.5 146 63.7
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 1.0e-47 194.1 161 58.4
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 1.3e-47 193.7 162 59.9
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 1.3e-47 193.7 139 65.5
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.7e-47 193.4 155 60.6
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 6.6e-47 191.4 162 59.9
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.1e-46 190.7 143 62.2
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 1.9e-46 189.9 152 60.5
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.9e-46 189.9 158 58.9
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 3.3e-46 189.1 140 61.4
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 3.3e-46 189.1 143 60.8
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 3.3e-46 189.1 144 61.8
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 3.3e-46 189.1 137 62.0
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 5.6e-46 188.3 150 61.3
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 9.5e-46 187.6 126 66.7
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 1.2e-45 187.2 150 62.7
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 2.1e-45 186.4 145 62.1
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 2.8e-45 186.0 188 54.3
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 2.8e-45 186.0 163 55.2
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 4.7e-45 185.3 150 60.7
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 8.0e-45 184.5 118 67.8
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 8.0e-45 184.5 188 53.7
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 1.1e-44 184.1 160 58.8
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 1.4e-44 183.7 145 62.1
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 1.4e-44 183.7 145 62.1
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 1.8e-44 183.3 135 65.2
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 3.1e-44 182.6 150 59.3
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 6.8e-44 181.4 153 58.8
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 1.5e-43 180.3 145 61.4
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 2.0e-43 179.9 145 61.4
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 2.0e-43 179.9 152 60.5
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 2.0e-43 179.9 145 58.6
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 2.0e-43 179.9 145 58.6
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 3.4e-43 179.1 145 60.7
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 3.4e-43 179.1 146 54.8
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 3.4e-43 179.1 132 62.1
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 9.8e-43 177.6 141 60.3
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 3.7e-42 175.6 154 53.9
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 3.7e-42 175.6 152 58.6
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 4.9e-42 175.3 199 44.7
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 1.4e-41 173.7 139 56.8
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 2.4e-41 172.9 122 66.4
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 1.2e-40 170.6 150 55.3
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 3.5e-40 169.1 148 55.4
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 3.0e-39 166.0 128 60.9
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 3.0e-39 166.0 128 58.6
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 3.9e-39 165.6 165 52.7
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 3.9e-39 165.6 165 52.7
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 6.6e-39 164.9 151 54.3
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 1.1e-38 164.1 151 54.3
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 1.1e-38 164.1 160 50.0
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 3.3e-38 162.5 118 61.0
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 9.5e-38 161.0 149 50.3
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 2.8e-37 159.5 148 52.0
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 4.7e-37 158.7 162 53.1
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 1.4e-36 157.1 168 48.2
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 2.3e-36 156.4 151 49.7
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 1.2e-35 154.1 159 50.9
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 3.4e-35 152.5 159 50.3
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 4.4e-35 152.1 145 51.0
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 3.7e-34 149.1 79 83.5
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 5.4e-33 145.2 131 53.4
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 1.2e-32 144.1 113 57.5
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 6.0e-32 141.7 144 50.0
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 6.0e-32 141.7 144 50.0
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 3.0e-31 139.4 140 51.4
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 2.2e-26 123.2 115 54.8
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 1.0e-23 114.4 76 65.8
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 4.3e-22 109.0 64 73.4
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 8.1e-21 104.8 85 56.5
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 1.7e-18 97.1 72 65.3
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 3.8e-18 95.9 152 37.5
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 3.8e-18 95.9 156 37.2
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 8.4e-18 94.7 71 63.4
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 9.3e-17 91.3 73 57.5
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 1.6e-16 90.5 59 64.4
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 3.5e-16 89.4 66 63.6
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 1.3e-15 87.4 62 58.1
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 2.8e-13 79.7 42 73.8
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 1.4e-12 77.4 85 47.1
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 1.5e-11 73.9 78 46.2


User provided reference genes

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