Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35658 Davidia involucrata HOM05D013363 ORTHO05D015094 2.6e-277 958.0 457 100.0
Dinv35655 Davidia involucrata HOM05D013363 ORTHO05D015094 4.8e-146 521.9 391 69.8
Dinv35657 Davidia involucrata HOM05D013363 ORTHO05D015094 6.3e-138 495.0 394 66.8
Dinv35632 Davidia involucrata HOM05D013363 ORTHO05D015094 1.0e-95 354.8 397 52.4
Dinv35477 Davidia involucrata HOM05D013363 ORTHO05D015094 3.9e-95 352.8 322 59.0
Dinv35654 Davidia involucrata HOM05D013363 ORTHO05D015094 1.1e-89 334.7 398 50.5
Dinv35631 Davidia involucrata HOM05D013363 ORTHO05D015094 7.3e-86 322.0 389 50.9
Dinv35802 Davidia involucrata HOM05D013363 ORTHO05D015094 1.3e-53 214.9 242 51.7
Dinv35834 Davidia involucrata HOM05D013363 ORTHO05D015094 3.4e-51 206.8 250 49.6
Dinv01639 Davidia involucrata HOM05D013363 ORTHO05D015094 7.2e-49 199.1 252 47.6
Dinv35599 Davidia involucrata HOM05D013363 ORTHO05D015094 1.7e-26 124.8 173 43.4
Dinv34884 Davidia involucrata HOM05D010628 ORTHO05D010877 7.5e-22 109.4 218 34.4
QL02p073240 Quercus lobata HOM05D025100 ORTHO05D010877 8.3e-21 105.9 351 30.5
Dinv25052 Davidia involucrata HOM05D011324 ORTHO05D013448 1.8e-20 104.8 292 31.2
Dinv28165 Davidia involucrata HOM05D011324 ORTHO05D013448 1.5e-17 95.1 300 27.3
Dinv25051 Davidia involucrata HOM05D011324 ORTHO05D013448 1.9e-17 94.7 275 29.5
CSS0033575 Camellia sinensis var. sinensis HOM05D013111 ORTHO05D010877 2.5e-17 94.4 298 27.5
Dinv01717 Davidia involucrata HOM05D011324 ORTHO05D013448 2.8e-16 90.9 300 26.3
Rhsim12G0126200 Rhododendron simsii HOM05D010628 ORTHO05D010877 3.6e-16 90.5 292 28.8
Rhsim03G0231000 Rhododendron simsii HOM05D018081 ORTHO05D026100 1.0e-15 89.0 260 28.1
CSS0027586 Camellia sinensis var. sinensis HOM05D010628 ORTHO05D010877 1.8e-15 88.2 313 26.8
CSS0032255 Camellia sinensis var. sinensis HOM05D010628 ORTHO05D010877 2.3e-15 87.8 318 26.7
Dinv28170 Davidia involucrata HOM05D011324 ORTHO05D013448 2.3e-15 87.8 300 26.3
Dinv35803 Davidia involucrata HOM05D013363 ORTHO05D015094 4.0e-15 87.0 91 50.5
QL11p026859 Quercus lobata HOM05D061260 ORTHO05D009743 5.2e-15 86.7 247 30.4
Dinv28164 Davidia involucrata HOM05D011324 ORTHO05D013448 8.9e-15 85.9 308 26.0
QL11p026821 Quercus lobata HOM05D061260 ORTHO05D009743 8.9e-15 85.9 275 29.1
CSS0005117 Camellia sinensis var. sinensis HOM05D025536 ORTHO05D010877 1.5e-14 85.1 284 27.5
RhsimUnG0033800 Rhododendron simsii HOM05D010628 ORTHO05D010877 2.0e-14 84.7 297 27.3
CSS0008723 Camellia sinensis var. sinensis HOM05D010628 ORTHO05D010877 2.6e-14 84.3 308 28.2
COL.COLO4_31291 Corchorus olitorius HOM05D017380 ORTHO05D019049 4.4e-14 83.6 288 26.0
CSS0022125 Camellia sinensis var. sinensis HOM05D025536 ORTHO05D010877 5.7e-14 83.2 234 28.6
CSS0046102 Camellia sinensis var. sinensis HOM05D025536 ORTHO05D010877 7.5e-14 82.8 295 25.8
COL.COLO4_31368 Corchorus olitorius HOM05D017380 ORTHO05D019049 7.5e-14 82.8 301 26.2
Dinv25049 Davidia involucrata HOM05D011324 ORTHO05D013448 7.5e-14 82.8 283 29.0
Dinv28168 Davidia involucrata HOM05D011324 ORTHO05D013448 1.3e-13 82.0 262 24.0
QL11p054840 Quercus lobata HOM05D000002 ORTHO05D000001 1.3e-13 82.0 325 25.2
COL.COLO4_09593 Corchorus olitorius HOM05D014846 ORTHO05D016249 2.2e-13 81.3 213 27.2
Lju926A3G38 Lonicera japonica HOM05D008418 ORTHO05D011146 2.8e-13 80.9 288 25.3
COL.COLO4_09561 Corchorus olitorius HOM05D014846 ORTHO05D016249 8.3e-13 79.3 206 28.6
COL.COLO4_09850 Corchorus olitorius HOM05D014846 ORTHO05D016249 8.3e-13 79.3 276 26.1
QL11p050245 Quercus lobata HOM05D010066 ORTHO05D009743 4.1e-12 77.0 273 26.7
QL93p0284_0002 Quercus lobata HOM05D010066 ORTHO05D009743 4.1e-12 77.0 273 26.7
CSS0019383 Camellia sinensis var. sinensis HOM05D025100 ORTHO05D013046 9.2e-12 75.9 325 25.2
SGA_v2.0_scaffold130G34356 Striga asiatica HOM05D017380 ORTHO05D019049 9.2e-12 75.9 205 30.7
CSS0012725 Camellia sinensis var. sinensis HOM05D025100 ORTHO05D013046 1.2e-11 75.5 293 26.6
COL.COLO4_24092 Corchorus olitorius HOM05D014846 ORTHO05D016249 1.2e-11 75.5 227 26.0
COL.COLO4_31293 Corchorus olitorius HOM05D001422 ORTHO05D001321 1.6e-11 75.1 299 26.8
COL.COLO4_05074 Corchorus olitorius HOM05D009781 ORTHO05D011819 2.7e-11 74.3 246 27.2
Rhsim03G0011900 Rhododendron simsii HOM05D018081 ORTHO05D010877 7.8e-11 72.8 275 24.4
CSS0029553 Camellia sinensis var. sinensis HOM05D013111 ORTHO05D013046 1.0e-10 72.4 293 26.6
Haze_19278 Corylus avellana HOM05D008391 ORTHO05D009743 1.3e-10 72.0 246 26.0
Rhsim10G0205000 Rhododendron simsii HOM05D012885 ORTHO05D010877 2.3e-10 71.2 276 26.1
CSS0026782 Camellia sinensis var. sinensis HOM05D025100 ORTHO05D013046 2.9e-10 70.9 262 25.6
Haze_19261 Corylus avellana HOM05D008391 ORTHO05D009743 2.9e-10 70.9 246 25.6
QL11p051711 Quercus lobata HOM05D010066 ORTHO05D009743 3.8e-10 70.5 331 23.6
Aqoxy2G03423 Aquilegia oxysepala HOM05D011324 ORTHO05D013448 6.6e-10 69.7 212 26.9
COL.COLO4_17456 Corchorus olitorius HOM05D014846 ORTHO05D016249 8.6e-10 69.3 112 34.8
Thhalv10004132m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 8.6e-10 69.3 109 39.4
Rhsim03G0039300 Rhododendron simsii HOM05D018081 ORTHO05D010877 8.6e-10 69.3 278 25.5
AT4G11770 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 1.1e-09 68.9 90 40.0
Actinidia16043 Actinidia chinensis HOM05D000249 ORTHO05D000206 1.9e-09 68.2 255 27.5
Dinv33461 Davidia involucrata HOM05D010628 ORTHO05D010877 2.5e-09 67.8 266 24.1
Gohir.A06G029200 Gossypium hirsutum HOM05D009781 ORTHO05D011819 3.3e-09 67.4 230 26.5
Rhsim05G0013500 Rhododendron simsii HOM05D012885 ORTHO05D010877 3.3e-09 67.4 284 26.4
BcaNung00910 Brassica carinata HOM05D000249 ORTHO05D000206 5.6e-09 66.6 117 35.9
C01p00900 Brassica napus HOM05D000249 ORTHO05D000206 5.6e-09 66.6 117 35.9
BolC1t00091H Brassica oleracea HOM05D000249 ORTHO05D000206 5.6e-09 66.6 117 35.9
Rhsim06G0086400 Rhododendron simsii HOM05D003569 ORTHO05D004178 5.6e-09 66.6 150 30.0
VMungo1309G0008 Vigna mungo HOM05D003569 ORTHO05D004178 5.6e-09 66.6 139 31.7
Aqoxy2G03550 Aquilegia oxysepala HOM05D013671 ORTHO05D010877 9.5e-09 65.9 103 34.0
arahy.Tifrunner.gnm1.ann1.DJE5AQ Arachis hypogaea HOM05D003569 ORTHO05D004178 9.5e-09 65.9 147 28.6
arahy.Tifrunner.gnm1.ann1.IAZ4XM Arachis hypogaea HOM05D003569 ORTHO05D004178 9.5e-09 65.9 147 28.6
Phvul.009G027300 Phaseolus vulgaris HOM05D003569 ORTHO05D004178 9.5e-09 65.9 139 30.9
QL11p003115 Quercus lobata HOM05D010066 ORTHO05D009743 9.5e-09 65.9 303 26.4
Thecc.01G112800 Theobroma cacao HOM05D000249 ORTHO05D000206 9.5e-09 65.9 144 30.6
AL7G12140 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 1.6e-08 65.1 108 35.2
Glyma.06G106800 Glycine max HOM05D003569 ORTHO05D004178 2.1e-08 64.7 147 29.3
BolC2t08508H Brassica oleracea HOM05D000249 ORTHO05D000206 2.8e-08 64.3 113 36.3
Aqoxy7G03143 Aquilegia oxysepala HOM05D008418 ORTHO05D011146 3.6e-08 63.9 153 30.7
AL7G12790 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 4.7e-08 63.5 110 32.7
AT4G23580 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 4.7e-08 63.5 101 34.7
C02p23780 Brassica napus HOM05D000249 ORTHO05D000206 4.7e-08 63.5 113 36.3
Lalb_Chr23g0270721 Lupinus albus HOM05D003569 ORTHO05D004178 4.7e-08 63.5 152 28.9
Sp7g36320 Schrenkiella parvula HOM05D000249 ORTHO05D000206 4.7e-08 63.5 108 35.2
Carub.0006s3086 Capsella rubella HOM05D000249 ORTHO05D000206 6.1e-08 63.2 88 35.2
A02p14670 Brassica napus HOM05D000249 ORTHO05D000206 8.0e-08 62.8 112 37.5
C01p00610 Brassica napus HOM05D000249 ORTHO05D000206 8.0e-08 62.8 165 27.9
BraA02t06534Z Brassica rapa HOM05D000249 ORTHO05D000206 8.0e-08 62.8 112 37.5
Manes.02G156800 Manihot esculenta HOM05D003569 ORTHO05D004178 8.0e-08 62.8 147 27.9
BcaC05g25412 Brassica carinata HOM05D000249 ORTHO05D014429 1.0e-07 62.4 122 33.6
C05p12880 Brassica napus HOM05D000249 ORTHO05D014429 1.0e-07 62.4 122 33.6
C07p63090 Brassica napus HOM05D000249 ORTHO05D000206 1.0e-07 62.4 89 39.3
BolC5t30035H Brassica oleracea HOM05D000249 ORTHO05D014429 1.0e-07 62.4 122 33.6
AL4G22950 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 1.4e-07 62.0 96 41.7
C07p60270 Brassica napus HOM05D000249 ORTHO05D000206 1.4e-07 62.0 110 30.0
BolC7t46468H Brassica oleracea HOM05D000249 ORTHO05D000206 1.4e-07 62.0 110 30.0
BolC7t46720H Brassica oleracea HOM05D000249 ORTHO05D000206 1.4e-07 62.0 89 39.3
Zm00001eb182900 Zea mays HOM05D003569 ORTHO05D004178 1.4e-07 62.0 140 32.9
AL7G32390 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 1.8e-07 61.6 96 38.5
BraA05t21401Z Brassica rapa HOM05D000249 ORTHO05D000206 1.8e-07 61.6 96 36.5
CARHR210320 Cardamine hirsuta HOM05D000249 ORTHO05D000206 1.8e-07 61.6 99 34.3
AL6G12300 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 2.3e-07 61.2 97 37.1
A05p25250 Brassica napus HOM05D000249 ORTHO05D000206 2.3e-07 61.2 87 37.9
Carub.0007s0183 Capsella rubella HOM05D000249 ORTHO05D000206 2.3e-07 61.2 132 32.6
Carub.0007s1979 Capsella rubella HOM05D000249 ORTHO05D000206 2.3e-07 61.2 88 37.5
CARHR247140 Cardamine hirsuta HOM05D000249 ORTHO05D000206 2.3e-07 61.2 89 38.2
TAR381G1098 Trochodendron aralioides HOM05D000249 ORTHO05D000206 2.3e-07 61.2 231 26.4
BcaNung05816 Brassica carinata HOM05D000249 ORTHO05D000206 3.1e-07 60.8 165 27.9
A08p23270 Brassica napus HOM05D000249 ORTHO05D000206 3.1e-07 60.8 102 37.3
BraA08t34282Z Brassica rapa HOM05D000249 ORTHO05D000206 3.1e-07 60.8 102 37.3
CARHR132630 Cardamine hirsuta HOM05D000249 ORTHO05D000206 3.1e-07 60.8 119 35.3
COL.COLO4_15708 Corchorus olitorius HOM05D014846 ORTHO05D016249 3.1e-07 60.8 69 37.7
Haze_19844 Corylus avellana HOM05D027064 ORTHO05D009743 3.1e-07 60.8 156 27.6
QL11p036944 Quercus lobata HOM05D010066 ORTHO05D009743 3.1e-07 60.8 150 28.0
Sabra07G0068100 Salix brachista HOM05D000249 ORTHO05D000206 3.1e-07 60.8 95 37.9
BcaB05g24281 Brassica carinata HOM05D000249 ORTHO05D000206 4.0e-07 60.5 113 34.5
Glyma.04G107000 Glycine max HOM05D003569 ORTHO05D004178 4.0e-07 60.5 137 27.7
Pp3c14_4360 Physcomitrium patens HOM05D003569 ORTHO05D004178 4.0e-07 60.5 145 29.0
AT4G34170 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 5.2e-07 60.1 111 35.1
A06p08740 Brassica napus HOM05D000249 ORTHO05D014429 5.2e-07 60.1 122 33.6
Potri.007G081100 Populus trichocarpa HOM05D000249 ORTHO05D000206 5.2e-07 60.1 93 36.6
AT4G33900 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 6.8e-07 59.7 117 35.9
AT5G02995 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 6.8e-07 59.7 109 31.2
C05p04170 Brassica napus HOM05D000249 ORTHO05D000206 6.8e-07 59.7 135 30.4
BolC5t29192H Brassica oleracea HOM05D000249 ORTHO05D000206 6.8e-07 59.7 135 30.4
Carub.0007s0257 Capsella rubella HOM05D000249 ORTHO05D000206 6.8e-07 59.7 133 25.6
Prupe.1G558500 Prunus persica HOM05D003569 ORTHO05D004178 6.8e-07 59.7 247 24.3
QL11p036670 Quercus lobata HOM05D010066 ORTHO05D009743 6.8e-07 59.7 126 30.2
QL11p036882 Quercus lobata HOM05D010066 ORTHO05D009743 6.8e-07 59.7 126 30.2
QL11p036893 Quercus lobata HOM05D010066 ORTHO05D009743 6.8e-07 59.7 126 30.2
A06p43040 Brassica napus HOM05D000249 ORTHO05D000206 8.9e-07 59.3 133 27.8
BraA06t24494Z Brassica rapa HOM05D000249 ORTHO05D000206 8.9e-07 59.3 133 27.8
Dinv28162 Davidia involucrata HOM05D011324 ORTHO05D013448 8.9e-07 59.3 102 34.3
AL7G13600 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 1.2e-06 58.9 92 38.0
BolC1t00064H Brassica oleracea HOM05D000249 ORTHO05D000206 1.2e-06 58.9 137 29.9
BraA08t34999Z Brassica rapa HOM05D000249 ORTHO05D000206 1.2e-06 58.9 109 33.9
Carub.0001s4063 Capsella rubella HOM05D000249 ORTHO05D000206 1.2e-06 58.9 97 29.9
Carub.0002s0602 Capsella rubella HOM05D000249 ORTHO05D000206 1.2e-06 58.9 105 33.3
Dinv25048 Davidia involucrata HOM05D011324 ORTHO05D013448 1.2e-06 58.9 193 26.9
Migut.N01004 Erythranthe guttata HOM05D003569 ORTHO05D004178 1.2e-06 58.9 152 30.9
AL7G12760 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 1.5e-06 58.5 96 39.6
AT2G29600 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 1.5e-06 58.5 141 30.5
A03p62720 Brassica napus HOM05D000249 ORTHO05D000206 1.5e-06 58.5 115 30.4
BraA06t24071Z Brassica rapa HOM05D000249 ORTHO05D014429 1.5e-06 58.5 107 36.4
DCAR_028460 Daucus carota HOM05D019862 ORTHO05D011819 1.5e-06 58.5 225 25.8
Aqoxy6G00478 Aquilegia oxysepala HOM05D000249 ORTHO05D000206 2.0e-06 58.2 137 31.4
Haze_19846 Corylus avellana HOM05D027064 ORTHO05D009743 2.0e-06 58.2 127 29.9
AL7G11730 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 3.4e-06 57.4 93 39.8
AT5G03000 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 3.4e-06 57.4 97 36.1
Potri.005G170000 Populus trichocarpa HOM05D003569 ORTHO05D004178 3.4e-06 57.4 147 28.6
BcaNung05811 Brassica carinata HOM05D000249 ORTHO05D000206 4.4e-06 57.0 108 34.3
BolC1t00060H Brassica oleracea HOM05D000249 ORTHO05D000206 4.4e-06 57.0 108 34.3
Rhsim05G0014400 Rhododendron simsii HOM05D012885 ORTHO05D010877 4.4e-06 57.0 285 23.5
Carub.0006s0181 Capsella rubella HOM05D000249 ORTHO05D000206 5.8e-06 56.6 86 38.4
COL.COLO4_20526 Corchorus olitorius HOM05D014846 ORTHO05D016249 5.8e-06 56.6 196 25.0
BcaC05g25104 Brassica carinata HOM05D000249 ORTHO05D014429 7.5e-06 56.2 123 32.5
Gorai.010G041400 Gossypium raimondii HOM05D009781 ORTHO05D011819 7.5e-06 56.2 143 26.6
AL1G59720 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 9.8e-06 55.8 108 29.6
AT4G39290 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 9.8e-06 55.8 93 37.6
C07p01540 Brassica napus HOM05D000249 ORTHO05D000206 9.8e-06 55.8 113 31.0
DCAR_018731 Daucus carota HOM05D029922 ORTHO05D013046 9.8e-06 55.8 283 23.7


User provided reference genes

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