Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 1.4e-262 909.1 471 100.0
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 5.6e-222 774.2 449 88.9
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 1.1e-217 760.0 509 79.6
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 9.2e-217 756.9 471 83.7
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 9.2e-217 756.9 471 83.0
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 1.5e-214 749.6 472 81.1
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 3.3e-214 748.4 466 82.4
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 2.1e-213 745.7 475 83.4
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 3.6e-213 745.0 472 80.5
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 1.4e-212 743.0 472 83.3
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 1.5e-211 739.6 475 82.7
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 1.1e-209 733.4 476 81.9
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 9.2e-209 730.3 445 84.0
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 1.7e-207 726.1 471 81.5
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 1.7e-207 726.1 457 83.6
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 5.1e-207 724.5 471 79.8
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 8.6e-207 723.8 482 79.5
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 1.5e-206 723.0 471 80.9
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 1.9e-206 722.6 471 80.3
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 9.5e-206 720.3 457 82.9
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 4.7e-205 718.0 467 81.4
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 4.7e-205 718.0 463 81.6
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 4.0e-204 714.9 489 78.7
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 5.2e-204 714.5 471 79.4
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 6.8e-204 714.1 471 78.8
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 8.9e-204 713.8 468 79.5
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 5.8e-203 711.1 459 81.7
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 9.9e-203 710.3 479 78.3
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 1.7e-202 709.5 483 78.1
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 2.2e-202 709.1 473 78.6
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 2.2e-202 709.1 473 78.9
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 4.9e-202 708.0 471 79.2
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 6.4e-202 707.6 471 77.5
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 8.4e-202 707.2 473 78.2
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 1.9e-201 706.1 473 78.2
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 4.1e-201 704.9 471 78.1
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 9.2e-201 703.7 471 78.1
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 9.2e-201 703.7 494 75.5
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 2.1e-200 702.6 471 77.5
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 3.0e-199 698.7 477 76.9
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 3.9e-199 698.4 471 76.9
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 3.9e-199 698.4 509 75.0
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 8.7e-199 697.2 465 77.4
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 8.7e-199 697.2 473 78.2
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 1.1e-198 696.8 471 77.5
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 1.9e-198 696.0 473 77.4
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 3.3e-198 695.3 465 78.5
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 9.6e-198 693.7 456 79.4
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 1.2e-197 693.3 466 78.3
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 1.2e-197 693.3 473 76.5
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 1.2e-197 693.3 471 77.3
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 1.6e-197 693.0 452 80.5
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 8.1e-197 690.6 448 78.6
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 8.1e-197 690.6 471 78.1
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 1.8e-196 689.5 434 81.6
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 3.1e-196 688.7 461 77.9
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 1.5e-195 686.4 471 77.3
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 2.6e-195 685.6 473 74.8
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 2.6e-195 685.6 471 76.9
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 3.4e-195 685.3 490 74.7
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 4.4e-195 684.9 471 76.0
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 7.6e-195 684.1 450 80.0
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 9.9e-195 683.7 434 80.2
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 3.2e-193 678.7 478 75.1
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 3.2e-193 678.7 466 76.4
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 4.2e-193 678.3 471 74.7
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 7.1e-193 677.6 473 75.9
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 7.1e-193 677.6 444 78.8
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 1.2e-192 676.8 471 76.9
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 3.5e-192 675.2 444 79.5
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 3.5e-192 675.2 473 75.3
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 4.6e-192 674.9 470 76.2
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 7.8e-192 674.1 473 73.8
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 8.7e-191 670.6 437 80.8
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 1.1e-190 670.2 470 75.5
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 1.9e-190 669.5 465 75.3
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 1.9e-190 669.5 465 75.7
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 3.3e-190 668.7 465 75.1
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 4.3e-190 668.3 465 75.3
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 7.3e-190 667.5 465 75.5
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 1.3e-189 666.8 465 75.3
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 3.6e-189 665.2 464 75.2
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 3.6e-189 665.2 444 77.7
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 6.2e-189 664.5 470 74.7
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 8.1e-189 664.1 465 75.1
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 1.1e-188 663.7 466 74.2
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 3.4e-187 658.7 464 75.2
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 3.4e-187 658.7 465 75.1
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 4.5e-187 658.3 465 74.4
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 8.4e-186 654.1 550 65.8
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 1.2e-184 650.2 491 71.1
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 3.3e-182 642.1 425 80.7
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 8.1e-181 637.5 399 83.2
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 6.4e-178 627.9 412 80.1
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 1.4e-177 626.7 427 74.9
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 9.3e-177 624.0 406 80.3
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 9.6e-174 614.0 422 73.9
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 1.8e-172 609.8 471 70.9
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 6.0e-168 594.7 399 78.9
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.8e-167 593.2 389 81.5
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 3.0e-167 592.4 424 71.7
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 6.7e-167 591.3 422 75.1
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 5.7e-166 588.2 444 70.3
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 1.8e-164 583.2 346 89.9
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 5.3e-164 581.6 478 69.5
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 2.1e-160 569.7 386 74.9
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 7.9e-160 567.8 423 69.7
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 2.3e-135 486.5 360 69.7
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 8.8e-135 484.6 436 59.2
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 4.1e-132 475.7 429 64.3
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 9.4e-129 464.5 329 70.5
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 9.8e-126 454.5 326 75.2
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 1.6e-123 447.2 437 57.7
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 6.8e-119 431.8 434 55.5
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 4.5e-115 419.1 253 87.4
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 5.0e-106 389.0 388 58.0
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 1.5e-97 360.9 242 81.0
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 4.0e-95 352.8 229 83.8
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 1.1e-89 334.7 202 86.1
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 7.3e-89 332.0 195 86.7
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 3.3e-81 306.6 204 78.4
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 2.0e-70 270.8 218 63.8
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 5.4e-68 262.7 182 80.2
VMungo0720G1280 Vigna mungo HOM05D004269 ORTHO05D007106 1.3e-61 241.5 147 79.6
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 1.5e-54 218.0 455 36.3
SEGI_16124 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.8e-50 204.5 124 79.0
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 2.0e-38 164.5 149 61.7
Cc02_g24250 Coffea canephora HOM05D004269 ORTHO05D007106 1.2e-35 155.2 102 78.4
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 3.6e-35 153.7 137 62.0
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 3.6e-35 153.7 137 62.0
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 6.1e-35 152.9 263 40.3
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 1.7e-32 144.8 158 56.3
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 3.7e-32 143.7 263 38.4
QL09p013305 Quercus lobata HOM05D004269 ORTHO05D010618 2.9e-29 134.0 101 71.3
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.5e-28 131.7 104 67.3
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 1.9e-28 131.3 101 71.3
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 1.9e-20 104.8 117 54.7
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 3.6e-19 100.5 87 59.8
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 3.7e-16 90.5 68 66.2
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 3.7e-16 90.5 68 66.2
Lsat_1_v5_gn_1_104560 Lactuca sativa HOM05D001098 ORTHO05D003515 4.8e-16 90.1 46 84.8
Lsat_1_v5_gn_9_124300 Lactuca sativa HOM05D001098 ORTHO05D003515 4.8e-16 90.1 46 84.8
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 1.3e-13 82.0 71 63.4
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 2.2e-13 81.3 90 56.7
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 5.0e-13 80.1 167 37.7
BcaB08g34435 Brassica carinata HOM05D004269 ORTHO05D000659 1.1e-12 79.0 61 57.4
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 1.1e-12 79.0 106 49.1
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 2.5e-12 77.8 128 42.2
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 3.2e-12 77.4 106 48.1
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 3.2e-12 77.4 106 48.1
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 3.2e-12 77.4 106 48.1
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 4.2e-12 77.0 106 48.1
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 4.2e-12 77.0 106 48.1
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 5.5e-12 76.6 106 47.2
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 9.4e-12 75.9 106 47.2
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 9.4e-12 75.9 106 46.2
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 1.2e-11 75.5 64 62.5
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 2.1e-11 74.7 176 34.1
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 3.6e-11 73.9 80 53.8
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 1.4e-10 72.0 63 61.9
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 4.0e-10 70.5 76 52.6
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 6.8e-10 69.7 108 46.3
AUR62005065 Chenopodium quinoa HOM05D018411 ORTHO05D021565 9.8e-09 65.9 55 61.8
Glyma.18G131800 Glycine max HOM05D004269 ORTHO05D213362 3.7e-08 63.9 46 63.0
CARHR249580 Cardamine hirsuta HOM05D004269 ORTHO05D021565 6.3e-08 63.2 57 61.4
CAN.G1327.6 Capsicum annuum HOM05D004269 ORTHO05D007861 5.4e-07 60.1 48 68.8
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 1.2e-06 58.9 45 64.4
BcaC07g37638 Brassica carinata HOM05D004269 ORTHO05D016737 1.2e-06 58.9 39 71.8
Lsat_1_v5_gn_3_20180 Lactuca sativa HOM05D000819 ORTHO05D000661 5.9e-06 56.6 60 58.3
BcaB08g35223 Brassica carinata HOM05D004269 ORTHO05D016737 7.7e-06 56.2 38 68.4


User provided reference genes

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