Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35632 Davidia involucrata HOM05D013363 ORTHO05D015094 1.0e-232 809.7 407 100.0
Dinv35477 Davidia involucrata HOM05D013363 ORTHO05D015094 6.5e-126 454.9 335 69.6
Dinv35658 Davidia involucrata HOM05D013363 ORTHO05D015094 1.3e-94 350.9 397 52.4
Dinv35655 Davidia involucrata HOM05D013363 ORTHO05D015094 8.6e-78 295.0 406 47.3
Dinv35631 Davidia involucrata HOM05D013363 ORTHO05D015094 5.5e-77 292.4 399 45.9
Dinv35654 Davidia involucrata HOM05D013363 ORTHO05D015094 7.2e-77 292.0 414 45.4
Dinv35657 Davidia involucrata HOM05D013363 ORTHO05D015094 8.0e-76 288.5 408 46.1
Dinv35599 Davidia involucrata HOM05D013363 ORTHO05D015094 2.9e-49 200.3 162 64.8
Dinv35834 Davidia involucrata HOM05D013363 ORTHO05D015094 3.7e-49 199.9 266 46.6
Dinv35802 Davidia involucrata HOM05D013363 ORTHO05D015094 9.2e-48 195.3 245 46.5
Dinv01639 Davidia involucrata HOM05D013363 ORTHO05D015094 1.3e-33 148.3 258 40.7
CSS0033575 Camellia sinensis var. sinensis HOM05D013111 ORTHO05D010877 4.0e-19 100.1 319 29.5
Dinv25052 Davidia involucrata HOM05D011324 ORTHO05D013448 1.5e-18 98.2 293 30.0
QL02p073240 Quercus lobata HOM05D025100 ORTHO05D010877 7.6e-18 95.9 289 30.8
Dinv34884 Davidia involucrata HOM05D010628 ORTHO05D010877 1.0e-17 95.5 218 26.6
Dinv35803 Davidia involucrata HOM05D013363 ORTHO05D015094 2.9e-17 94.0 89 56.2
CSS0032255 Camellia sinensis var. sinensis HOM05D010628 ORTHO05D010877 1.4e-16 91.7 264 29.9
CSS0005117 Camellia sinensis var. sinensis HOM05D025536 ORTHO05D010877 1.9e-16 91.3 310 27.1
CSS0027586 Camellia sinensis var. sinensis HOM05D010628 ORTHO05D010877 1.9e-16 91.3 241 31.5
CSS0008723 Camellia sinensis var. sinensis HOM05D010628 ORTHO05D010877 5.5e-16 89.7 305 29.2
CSS0022125 Camellia sinensis var. sinensis HOM05D025536 ORTHO05D010877 7.1e-16 89.4 310 26.8
CSS0046102 Camellia sinensis var. sinensis HOM05D025536 ORTHO05D010877 9.3e-16 89.0 302 27.2
Dinv28170 Davidia involucrata HOM05D011324 ORTHO05D013448 4.6e-15 86.7 285 27.7
CSS0029553 Camellia sinensis var. sinensis HOM05D013111 ORTHO05D013046 6.0e-15 86.3 255 28.6
Dinv28165 Davidia involucrata HOM05D011324 ORTHO05D013448 6.0e-15 86.3 288 27.4
QL11p050103 Quercus lobata HOM05D010066 ORTHO05D009743 7.9e-15 85.9 261 28.7
Dinv01717 Davidia involucrata HOM05D011324 ORTHO05D013448 2.3e-14 84.3 285 27.4
Lj3P635T20 Lonicera japonica HOM05D053282 ORTHO05D010877 2.3e-14 84.3 320 30.0
CSS0019383 Camellia sinensis var. sinensis HOM05D025100 ORTHO05D013046 3.0e-14 84.0 319 28.2
Hund00487 Selenicereus undatus HOM05D064078 ORTHO05D012831 1.5e-13 81.6 262 27.5
CSS0012725 Camellia sinensis var. sinensis HOM05D025100 ORTHO05D013046 3.3e-13 80.5 290 27.6
CSS0026782 Camellia sinensis var. sinensis HOM05D025100 ORTHO05D013046 7.4e-13 79.3 272 27.2
QL11p050365 Quercus lobata HOM05D010066 ORTHO05D009743 9.6e-13 79.0 306 25.5
QL05p053761 Quercus lobata HOM05D010066 ORTHO05D016816 2.1e-12 77.8 188 30.3
Rhsim07G0232000 Rhododendron simsii HOM05D010628 ORTHO05D010877 2.1e-12 77.8 300 25.3
COL.COLO4_24092 Corchorus olitorius HOM05D014846 ORTHO05D016249 2.8e-12 77.4 248 25.8
QL11p056498 Quercus lobata HOM05D010066 ORTHO05D009743 3.7e-12 77.0 180 29.4
QL11p054840 Quercus lobata HOM05D000002 ORTHO05D000001 1.1e-11 75.5 249 27.3
COL.COLO4_05074 Corchorus olitorius HOM05D009781 ORTHO05D011819 1.4e-11 75.1 195 30.3
COL.COLO4_09593 Corchorus olitorius HOM05D014846 ORTHO05D016249 1.8e-11 74.7 169 30.2
RhsimUnG0033600 Rhododendron simsii HOM05D010628 ORTHO05D010877 3.1e-11 73.9 316 24.1
Carub.0006s3086 Capsella rubella HOM05D000249 ORTHO05D000206 9.0e-11 72.4 198 25.3
Cfa003917 Carpinus fangiana HOM05D008391 ORTHO05D009743 1.2e-10 72.0 160 28.1
Cfa003918 Carpinus fangiana HOM05D008391 ORTHO05D009743 2.0e-10 71.2 171 28.1
A02p14670 Brassica napus HOM05D000249 ORTHO05D000206 3.4e-10 70.5 146 31.5
BraA02t06534Z Brassica rapa HOM05D000249 ORTHO05D000206 3.4e-10 70.5 146 31.5
Haze_15512 Corylus avellana HOM05D000163 ORTHO05D000962 3.4e-10 70.5 161 29.8
C02p23780 Brassica napus HOM05D000249 ORTHO05D000206 4.5e-10 70.1 146 31.5
CSS0022059 Camellia sinensis var. sinensis HOM05D013052 ORTHO05D000378 5.8e-10 69.7 222 27.5
A06p13420 Brassica napus HOM05D000249 ORTHO05D000206 7.6e-10 69.3 108 32.4
Rhsim03G0039300 Rhododendron simsii HOM05D018081 ORTHO05D010877 7.6e-10 69.3 286 24.8
BolC2t08508H Brassica oleracea HOM05D000249 ORTHO05D000206 1.3e-09 68.6 146 30.8
COL.COLO4_17456 Corchorus olitorius HOM05D014846 ORTHO05D016249 1.3e-09 68.6 115 34.8
SGA_v2.0_scaffold130G34356 Striga asiatica HOM05D017380 ORTHO05D019049 1.7e-09 68.2 238 29.0
Thecc.01G112800 Theobroma cacao HOM05D000249 ORTHO05D000206 1.7e-09 68.2 264 26.1
Aqoxy2G03550 Aquilegia oxysepala HOM05D013671 ORTHO05D010877 2.2e-09 67.8 172 26.7
Haze_19938 Corylus avellana HOM05D008391 ORTHO05D009743 2.9e-09 67.4 237 29.1
A06p43040 Brassica napus HOM05D000249 ORTHO05D000206 3.8e-09 67.0 98 34.7
BraA06t24494Z Brassica rapa HOM05D000249 ORTHO05D000206 3.8e-09 67.0 98 34.7
COL.COLO4_09850 Corchorus olitorius HOM05D014846 ORTHO05D016249 3.8e-09 67.0 160 31.9
AL7G12790 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 6.5e-09 66.2 116 32.8
Haze_19937 Corylus avellana HOM05D008391 ORTHO05D009743 6.5e-09 66.2 201 27.4
Dinv33461 Davidia involucrata HOM05D010628 ORTHO05D010877 6.5e-09 66.2 275 24.7
Haze_19278 Corylus avellana HOM05D008391 ORTHO05D009743 8.4e-09 65.9 246 26.0
Carub.0007s2189 Capsella rubella HOM05D000249 ORTHO05D000206 1.1e-08 65.5 95 41.1
A03p30960 Brassica napus HOM05D000249 ORTHO05D000206 1.4e-08 65.1 129 33.3
COL.COLO4_09561 Corchorus olitorius HOM05D014846 ORTHO05D016249 1.4e-08 65.1 206 24.8
Haze_19261 Corylus avellana HOM05D008391 ORTHO05D009743 1.9e-08 64.7 280 23.6
Aqoxy2G03423 Aquilegia oxysepala HOM05D011324 ORTHO05D013448 2.5e-08 64.3 212 27.8
Aqoxy7G03143 Aquilegia oxysepala HOM05D008418 ORTHO05D011146 3.2e-08 63.9 148 30.4
Lalb_Chr08g0238861 Lupinus albus HOM05D000249 ORTHO05D000206 3.2e-08 63.9 109 34.9
Rhsim10G0208800 Rhododendron simsii HOM05D012885 ORTHO05D010877 3.2e-08 63.9 231 26.0
COL.COLO4_31293 Corchorus olitorius HOM05D001422 ORTHO05D001321 4.2e-08 63.5 164 32.3
QL11p055392 Quercus lobata HOM05D010066 ORTHO05D009743 4.2e-08 63.5 97 34.0
RhsimUnG0033800 Rhododendron simsii HOM05D010628 ORTHO05D010877 4.2e-08 63.5 314 22.9
Aqoxy7G03986 Aquilegia oxysepala HOM05D029118 ORTHO05D026731 5.5e-08 63.2 263 22.8
C05p04170 Brassica napus HOM05D000249 ORTHO05D000206 5.5e-08 63.2 143 30.1
BolC5t29192H Brassica oleracea HOM05D000249 ORTHO05D000206 5.5e-08 63.2 143 30.1
Carub.0002s0602 Capsella rubella HOM05D000249 ORTHO05D000206 5.5e-08 63.2 129 33.3
COL.COLO4_15708 Corchorus olitorius HOM05D014846 ORTHO05D016249 5.5e-08 63.2 120 30.0
Lju926A3G38 Lonicera japonica HOM05D008418 ORTHO05D011146 5.5e-08 63.2 193 23.8
Thhalv10006011m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 7.1e-08 62.8 135 33.3
CARHR050910 Cardamine hirsuta HOM05D000249 ORTHO05D000206 9.3e-08 62.4 261 24.5
COL.COLO4_30776 Corchorus olitorius HOM05D014846 ORTHO05D016249 9.3e-08 62.4 199 26.1
COL.COLO4_31291 Corchorus olitorius HOM05D017380 ORTHO05D019049 9.3e-08 62.4 184 31.0
Oeu035219.1 Olea europaea HOM05D000614 ORTHO05D000463 9.3e-08 62.4 163 28.2
QL11p055815 Quercus lobata HOM05D025344 ORTHO05D021181 9.3e-08 62.4 70 40.0
Migut.N01004 Erythranthe guttata HOM05D003569 ORTHO05D004178 1.2e-07 62.0 114 34.2
AL7G11730 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 1.6e-07 61.6 178 28.1
VMungo1309G0008 Vigna mungo HOM05D003569 ORTHO05D004178 1.6e-07 61.6 155 27.1
AT4G19250 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 2.1e-07 61.2 99 38.4
AT4G19330 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 2.1e-07 61.2 99 38.4
Carub.0007s0348 Capsella rubella HOM05D000249 ORTHO05D000206 2.1e-07 61.2 113 29.2
QL11p042411 Quercus lobata HOM05D025344 ORTHO05D009743 2.1e-07 61.2 207 28.5
Rhsim05G0014400 Rhododendron simsii HOM05D012885 ORTHO05D010877 2.1e-07 61.2 272 29.0
TWI74G1430 Tripterygium wilfordii HOM05D000249 ORTHO05D000206 2.7e-07 60.8 99 38.4
Ah.01g016270 Amaranthus hybridus HOM05D036488 ORTHO05D021181 3.5e-07 60.5 142 26.8
Ah.01g016360 Amaranthus hybridus HOM05D036488 ORTHO05D021181 3.5e-07 60.5 142 26.8
Ah.01g016440 Amaranthus hybridus HOM05D036488 ORTHO05D021181 3.5e-07 60.5 142 26.8
C03p37710 Brassica napus HOM05D000249 ORTHO05D000206 3.5e-07 60.5 156 31.4
BolC3t16060H Brassica oleracea HOM05D000249 ORTHO05D000206 3.5e-07 60.5 156 31.4
BraA09t39256Z Brassica rapa HOM05D000249 ORTHO05D000206 3.5e-07 60.5 97 33.0
Thhalv10005584m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 3.5e-07 60.5 98 32.7
Lj2P1143T17 Lonicera japonica HOM05D012885 ORTHO05D015094 3.5e-07 60.5 235 25.1
Rhsim05G0013500 Rhododendron simsii HOM05D012885 ORTHO05D010877 4.6e-07 60.1 279 26.2
AT4G39290 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 6.1e-07 59.7 172 27.3
arahy.Tifrunner.gnm1.ann1.DJE5AQ Arachis hypogaea HOM05D003569 ORTHO05D004178 6.1e-07 59.7 155 27.1
arahy.Tifrunner.gnm1.ann1.IAZ4XM Arachis hypogaea HOM05D003569 ORTHO05D004178 6.1e-07 59.7 155 27.1
A01p00990 Brassica napus HOM05D000249 ORTHO05D024028 6.1e-07 59.7 186 26.3
A09p21200 Brassica napus HOM05D000249 ORTHO05D000206 6.1e-07 59.7 98 38.8
C09p27020 Brassica napus HOM05D000249 ORTHO05D000206 6.1e-07 59.7 98 38.8
BolC9t55585H Brassica oleracea HOM05D000249 ORTHO05D000206 6.1e-07 59.7 98 38.8
BraA01t00097Z Brassica rapa HOM05D000249 ORTHO05D024028 6.1e-07 59.7 186 26.3
BraA09t37726Z Brassica rapa HOM05D000249 ORTHO05D000206 6.1e-07 59.7 98 38.8
Phvul.009G027300 Phaseolus vulgaris HOM05D003569 ORTHO05D004178 6.1e-07 59.7 154 26.6
A06p43050 Brassica napus HOM05D000249 ORTHO05D000206 7.9e-07 59.3 97 34.0
Carub.0008s0634 Capsella rubella HOM05D000249 ORTHO05D000206 7.9e-07 59.3 107 30.8
Pp3c10_4990 Physcomitrium patens HOM05D003569 ORTHO05D004178 7.9e-07 59.3 211 25.1
Rhsim10G0205000 Rhododendron simsii HOM05D012885 ORTHO05D010877 7.9e-07 59.3 267 27.3
RhsimUnG0035000 Rhododendron simsii HOM05D010628 ORTHO05D010877 7.9e-07 59.3 120 33.3
COL.COLO4_31368 Corchorus olitorius HOM05D017380 ORTHO05D019049 1.0e-06 58.9 303 24.8
Nitab4.5_0007549g0020 Nicotiana tabacum HOM05D000614 ORTHO05D000463 1.0e-06 58.9 107 29.9
QL11p042465 Quercus lobata HOM05D025344 ORTHO05D009743 1.0e-06 58.9 208 25.5
AL4G22950 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 1.3e-06 58.5 117 34.2
AT4G34170 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 1.3e-06 58.5 161 26.1
C09p31410 Brassica napus HOM05D000249 ORTHO05D000206 1.3e-06 58.5 47 53.2
BolC9t56000H Brassica oleracea HOM05D000249 ORTHO05D000206 1.3e-06 58.5 47 53.2
CSS0043929 Camellia sinensis var. sinensis HOM05D013111 ORTHO05D013046 1.3e-06 58.5 98 37.8
Lj1g0013672 Lotus japonicus HOM05D000249 ORTHO05D000206 1.3e-06 58.5 106 34.0
Sp1g28120 Schrenkiella parvula HOM05D000249 ORTHO05D000206 1.3e-06 58.5 98 34.7
AL7G34820 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 1.8e-06 58.2 104 36.5
Haze_19844 Corylus avellana HOM05D027064 ORTHO05D009743 1.8e-06 58.2 164 26.8
Thhalv10025324m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 1.8e-06 58.2 103 34.0
Glyma.06G106800 Glycine max HOM05D003569 ORTHO05D004178 1.8e-06 58.2 155 26.5
Gohir.D11G057000 Gossypium hirsutum HOM05D000249 ORTHO05D000206 1.8e-06 58.2 216 23.6
Rhsim10G0205100 Rhododendron simsii HOM05D012885 ORTHO05D010877 1.8e-06 58.2 284 26.1
Aqoxy3G04200 Aquilegia oxysepala HOM05D010066 ORTHO05D011146 2.3e-06 57.8 108 31.5
AT2G44030 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 2.3e-06 57.8 116 32.8
BcaNung00910 Brassica carinata HOM05D000249 ORTHO05D000206 2.3e-06 57.8 96 37.5
C01p00900 Brassica napus HOM05D000249 ORTHO05D000206 2.3e-06 57.8 96 37.5
BolC1t00091H Brassica oleracea HOM05D000249 ORTHO05D000206 2.3e-06 57.8 96 37.5
CSS0015521 Camellia sinensis var. sinensis HOM05D000614 ORTHO05D000463 2.3e-06 57.8 99 36.4
Cfa016887 Carpinus fangiana HOM05D008391 ORTHO05D009743 2.3e-06 57.8 151 27.2
Haze_19846 Corylus avellana HOM05D027064 ORTHO05D009743 2.3e-06 57.8 134 30.6
Dinv28162 Davidia involucrata HOM05D011324 ORTHO05D013448 2.3e-06 57.8 98 34.7
Thhalv10025393m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 2.3e-06 57.8 161 28.6
Thhalv10027538m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 2.3e-06 57.8 140 33.6
Rhsim10G0208600 Rhododendron simsii HOM05D012885 ORTHO05D010877 2.3e-06 57.8 231 24.2
BcaC01g06741 Brassica carinata HOM05D000249 ORTHO05D000206 3.0e-06 57.4 156 30.1
BcaC01g06742 Brassica carinata HOM05D000249 ORTHO05D000206 3.0e-06 57.4 156 30.1
BcaC01g06743 Brassica carinata HOM05D000249 ORTHO05D000206 3.0e-06 57.4 156 30.1
Carub.0007s0257 Capsella rubella HOM05D000249 ORTHO05D000206 3.0e-06 57.4 97 28.9
COL.COLO4_11012 Corchorus olitorius HOM05D000249 ORTHO05D000206 3.0e-06 57.4 152 27.0
AL7G12140 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 3.9e-06 57.0 96 35.4
BcaC03g15452 Brassica carinata HOM05D000249 ORTHO05D000206 3.9e-06 57.0 78 37.2
Carub.0003s0535 Capsella rubella HOM05D000249 ORTHO05D014429 3.9e-06 57.0 137 27.7
Gorai.007G062200 Gossypium raimondii HOM05D000249 ORTHO05D000206 3.9e-06 57.0 216 23.6
AL7G13600 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 5.1e-06 56.6 143 28.0
AT4G11770 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 5.1e-06 56.6 100 32.0
A08p23370 Brassica napus HOM05D000249 ORTHO05D000206 5.1e-06 56.6 97 32.0
A10p12760 Brassica napus HOM05D000249 ORTHO05D000206 5.1e-06 56.6 150 32.0
BraA03t12273Z Brassica rapa HOM05D000249 ORTHO05D000206 5.1e-06 56.6 157 29.3
BraA08t34291Z Brassica rapa HOM05D000249 ORTHO05D000206 5.1e-06 56.6 97 32.0
BraA10t43368Z Brassica rapa HOM05D000249 ORTHO05D000206 5.1e-06 56.6 150 32.0
Carub.0007s2579 Capsella rubella HOM05D000249 ORTHO05D000206 5.1e-06 56.6 109 32.1
Cc07_g00750 Coffea canephora HOM05D000614 ORTHO05D000463 5.1e-06 56.6 156 25.6
Nitab4.5_0000762g0090 Nicotiana tabacum HOM05D000614 ORTHO05D000463 5.1e-06 56.6 107 29.0
Pp3c14_4360 Physcomitrium patens HOM05D003569 ORTHO05D004178 5.1e-06 56.6 211 25.1
A02p18850 Brassica napus HOM05D000249 ORTHO05D000206 6.7e-06 56.2 78 37.2
A08p23270 Brassica napus HOM05D000249 ORTHO05D000206 6.7e-06 56.2 112 33.9
BraA02t06929Z Brassica rapa HOM05D000249 ORTHO05D000206 6.7e-06 56.2 78 37.2
BraA08t34282Z Brassica rapa HOM05D000249 ORTHO05D000206 6.7e-06 56.2 112 33.9
Carub.0006s0178 Capsella rubella HOM05D000249 ORTHO05D000206 6.7e-06 56.2 112 33.0
CARHR246950 Cardamine hirsuta HOM05D000249 ORTHO05D000206 6.7e-06 56.2 99 33.3
CiPaw.03G134300 Carya illinoinensis HOM05D000249 ORTHO05D000206 6.7e-06 56.2 108 34.3
DCAR_021788 Daucus carota HOM05D000614 ORTHO05D000463 6.7e-06 56.2 107 29.0
Hund00506 Selenicereus undatus HOM05D064078 ORTHO05D012831 6.7e-06 56.2 54 42.6
Aqoxy6G00478 Aquilegia oxysepala HOM05D000249 ORTHO05D000206 8.7e-06 55.8 266 24.4
AT4G36840 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 8.7e-06 55.8 103 31.1
CARHR210300 Cardamine hirsuta HOM05D000249 ORTHO05D000206 8.7e-06 55.8 123 30.1
CARHR247140 Cardamine hirsuta HOM05D000249 ORTHO05D000206 8.7e-06 55.8 51 39.2


User provided reference genes

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