Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35631 Davidia involucrata HOM05D013363 ORTHO05D015094 4.6e-219 764.2 375 100.0
Dinv35654 Davidia involucrata HOM05D013363 ORTHO05D015094 8.3e-120 434.5 392 61.2
Dinv35658 Davidia involucrata HOM05D013363 ORTHO05D015094 2.7e-86 323.2 389 50.9
Dinv35632 Davidia involucrata HOM05D013363 ORTHO05D015094 6.0e-78 295.4 399 45.9
Dinv35477 Davidia involucrata HOM05D013363 ORTHO05D015094 1.9e-76 290.4 322 50.9
Dinv35655 Davidia involucrata HOM05D013363 ORTHO05D015094 1.9e-68 263.8 393 46.1
Dinv35657 Davidia involucrata HOM05D013363 ORTHO05D015094 1.4e-66 257.7 393 46.3
Dinv01639 Davidia involucrata HOM05D013363 ORTHO05D015094 1.4e-58 231.1 266 53.8
Dinv35802 Davidia involucrata HOM05D013363 ORTHO05D015094 5.3e-58 229.2 244 52.5
Dinv35834 Davidia involucrata HOM05D013363 ORTHO05D015094 1.3e-56 224.6 247 50.6
Dinv35599 Davidia involucrata HOM05D013363 ORTHO05D015094 2.6e-20 104.0 169 40.8
Dinv35803 Davidia involucrata HOM05D013363 ORTHO05D015094 1.2e-17 95.1 90 56.7
Rhsim12G0126200 Rhododendron simsii HOM05D010628 ORTHO05D010877 2.0e-17 94.4 323 30.0
CSS0008723 Camellia sinensis var. sinensis HOM05D010628 ORTHO05D010877 3.3e-15 87.0 247 30.8
Cfa003917 Carpinus fangiana HOM05D008391 ORTHO05D009743 3.3e-15 87.0 266 28.6
Dinv25051 Davidia involucrata HOM05D011324 ORTHO05D013448 4.3e-15 86.7 271 28.4
Haze_15512 Corylus avellana HOM05D000163 ORTHO05D000962 5.6e-15 86.3 280 28.2
Cfa003918 Carpinus fangiana HOM05D008391 ORTHO05D009743 1.6e-14 84.7 264 28.8
QL02p073240 Quercus lobata HOM05D025100 ORTHO05D010877 1.6e-14 84.7 300 28.3
Dinv25052 Davidia involucrata HOM05D011324 ORTHO05D013448 2.1e-14 84.3 268 30.6
QL11p045102 Quercus lobata HOM05D010066 ORTHO05D009743 3.6e-14 83.6 274 27.7
CSS0005117 Camellia sinensis var. sinensis HOM05D025536 ORTHO05D010877 2.3e-13 80.9 199 32.7
CSS0033575 Camellia sinensis var. sinensis HOM05D013111 ORTHO05D010877 4.0e-13 80.1 264 28.4
CSS0022125 Camellia sinensis var. sinensis HOM05D025536 ORTHO05D010877 1.5e-12 78.2 251 30.3
Rhsim05G0013500 Rhododendron simsii HOM05D012885 ORTHO05D010877 1.5e-12 78.2 288 24.7
COL.COLO4_31618 Corchorus olitorius HOM05D044258 ORTHO05D044749 3.4e-12 77.0 292 25.0
QL11p056498 Quercus lobata HOM05D010066 ORTHO05D009743 3.4e-12 77.0 264 28.0
CSS0027586 Camellia sinensis var. sinensis HOM05D010628 ORTHO05D010877 4.4e-12 76.6 199 30.2
CSS0032255 Camellia sinensis var. sinensis HOM05D010628 ORTHO05D010877 4.4e-12 76.6 199 30.2
COL.COLO4_24092 Corchorus olitorius HOM05D014846 ORTHO05D016249 9.8e-12 75.5 220 28.6
QL11p054840 Quercus lobata HOM05D000002 ORTHO05D000001 9.8e-12 75.5 242 30.6
Dinv28165 Davidia involucrata HOM05D011324 ORTHO05D013448 1.3e-11 75.1 268 26.5
Rhsim05G0014400 Rhododendron simsii HOM05D012885 ORTHO05D010877 1.7e-11 74.7 286 25.5
Dinv28167 Davidia involucrata HOM05D011324 ORTHO05D013448 4.9e-11 73.2 266 27.1
Rhsim03G0011900 Rhododendron simsii HOM05D018081 ORTHO05D010877 1.4e-10 71.6 305 26.9
Dinv01717 Davidia involucrata HOM05D011324 ORTHO05D013448 2.4e-10 70.9 271 26.9
Hma1.2p1_0375F.1_g138740 Hydrangea macrophylla HOM05D000249 ORTHO05D000206 2.4e-10 70.9 243 24.3
QL11p051711 Quercus lobata HOM05D010066 ORTHO05D009743 2.4e-10 70.9 324 25.3
Haze_19278 Corylus avellana HOM05D008391 ORTHO05D009743 4.1e-10 70.1 284 25.4
QL01p003691 Quercus lobata HOM05D010066 ORTHO05D009743 4.1e-10 70.1 238 28.2
COL.COLO4_05074 Corchorus olitorius HOM05D009781 ORTHO05D011819 9.2e-10 68.9 200 31.0
Dinv28170 Davidia involucrata HOM05D011324 ORTHO05D013448 9.2e-10 68.9 271 26.9
A01p00990 Brassica napus HOM05D000249 ORTHO05D024028 1.2e-09 68.6 172 29.1
BraA01t00097Z Brassica rapa HOM05D000249 ORTHO05D024028 1.2e-09 68.6 172 29.1
Haze_14914 Corylus avellana HOM05D008391 ORTHO05D009743 1.6e-09 68.2 242 25.6
CARHR132630 Cardamine hirsuta HOM05D000249 ORTHO05D000206 6.0e-09 66.2 134 34.3
Dinv28164 Davidia involucrata HOM05D011324 ORTHO05D013448 6.0e-09 66.2 273 26.4
AT2G29600 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 7.8e-09 65.9 132 29.5
QL11p019943 Quercus lobata HOM05D010066 ORTHO05D009743 7.8e-09 65.9 328 25.6
Carub.0003s0535 Capsella rubella HOM05D000249 ORTHO05D014429 1.0e-08 65.5 111 36.0
AT4G11770 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 1.3e-08 65.1 155 29.0
Haze_19261 Corylus avellana HOM05D008391 ORTHO05D009743 1.3e-08 65.1 243 26.3
Nitab4.5_0005995g0010 Nicotiana tabacum HOM05D000249 ORTHO05D000206 1.7e-08 64.7 242 24.4
QL11p026859 Quercus lobata HOM05D061260 ORTHO05D009743 1.7e-08 64.7 216 28.2
CSS0015488 Camellia sinensis var. sinensis HOM05D018855 ORTHO05D012831 2.3e-08 64.3 190 29.5
Dinv25049 Davidia involucrata HOM05D011324 ORTHO05D013448 2.3e-08 64.3 253 27.3
CSS0026782 Camellia sinensis var. sinensis HOM05D025100 ORTHO05D013046 3.9e-08 63.5 242 28.5
CAN.G767.7 Capsicum annuum HOM05D000249 ORTHO05D000206 3.9e-08 63.5 247 24.7
AL7G12760 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 5.0e-08 63.2 83 39.8
BolC2t08508H Brassica oleracea HOM05D000249 ORTHO05D000206 5.0e-08 63.2 102 34.3
COL.COLO4_31291 Corchorus olitorius HOM05D017380 ORTHO05D019049 5.0e-08 63.2 259 25.5
Duzib264G0155 Durio zibethinus HOM05D029922 ORTHO05D035097 5.0e-08 63.2 213 28.2
Duzib264G0667 Durio zibethinus HOM05D029922 ORTHO05D035097 5.0e-08 63.2 213 28.2
Nitab4.5_0000904g0030 Nicotiana tabacum HOM05D000249 ORTHO05D000206 5.0e-08 63.2 242 24.4
AL4G22950 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 6.6e-08 62.8 103 36.9
Dinv25048 Davidia involucrata HOM05D011324 ORTHO05D013448 6.6e-08 62.8 243 24.7
Thhalv10025324m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 6.6e-08 62.8 109 35.8
Lju926A3G38 Lonicera japonica HOM05D008418 ORTHO05D011146 6.6e-08 62.8 194 27.8
PGSC0003DMG400016578 Solanum tuberosum HOM05D000249 ORTHO05D000206 6.6e-08 62.8 244 25.0
TAR381G1098 Trochodendron aralioides HOM05D000249 ORTHO05D000206 8.6e-08 62.4 238 23.5
C05p04170 Brassica napus HOM05D000249 ORTHO05D000206 1.1e-07 62.0 95 40.0
BolC5t29192H Brassica oleracea HOM05D000249 ORTHO05D000206 1.1e-07 62.0 95 40.0
MSTRG.23312 Avicennia marina HOM05D000249 ORTHO05D000206 1.5e-07 61.6 154 30.5
COL.COLO4_11012 Corchorus olitorius HOM05D000249 ORTHO05D000206 1.5e-07 61.6 128 30.5
Migut.N01004 Erythranthe guttata HOM05D003569 ORTHO05D004178 1.5e-07 61.6 137 32.1
Rhsim10G0208600 Rhododendron simsii HOM05D012885 ORTHO05D010877 1.5e-07 61.6 201 24.9
CANSAT01G1486 Cannabis sativa HOM05D000249 ORTHO05D000206 1.9e-07 61.2 89 38.2
CARHR225340 Cardamine hirsuta HOM05D000249 ORTHO05D000206 1.9e-07 61.2 91 38.5
Thhalv10004132m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 1.9e-07 61.2 97 36.1
Solyc04g051870.3 Solanum lycopersicum HOM05D000249 ORTHO05D000206 1.9e-07 61.2 242 24.8
Sopen04g023200 Solanum pennellii HOM05D000249 ORTHO05D000206 1.9e-07 61.2 242 24.8
Thecc.01G112800 Theobroma cacao HOM05D000249 ORTHO05D000206 1.9e-07 61.2 132 29.5
AL7G12140 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 3.3e-07 60.5 94 35.1
Carub.0007s1979 Capsella rubella HOM05D000249 ORTHO05D000206 3.3e-07 60.5 100 34.0
CAN.G65.201 Capsicum annuum HOM05D000249 ORTHO05D000206 3.3e-07 60.5 244 24.2
DCAR_018731 Daucus carota HOM05D029922 ORTHO05D013046 3.3e-07 60.5 273 25.6
Rhsim10G0208800 Rhododendron simsii HOM05D012885 ORTHO05D010877 3.3e-07 60.5 200 25.0
AL7G11730 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 4.3e-07 60.1 106 34.9
Ca_16893_v3 Cicer arietinum L. HOM05D000249 ORTHO05D000206 4.3e-07 60.1 87 37.9
A02p14670 Brassica napus HOM05D000249 ORTHO05D000206 5.6e-07 59.7 94 36.2
BraA02t06534Z Brassica rapa HOM05D000249 ORTHO05D000206 5.6e-07 59.7 94 36.2
CARHR221070 Cardamine hirsuta HOM05D000249 ORTHO05D000206 5.6e-07 59.7 114 32.5
Lalb_Chr08g0238861 Lupinus albus HOM05D000249 ORTHO05D000206 5.6e-07 59.7 130 30.0
Lalb_Chr11g0075721 Lupinus albus HOM05D000667 ORTHO05D003843 5.6e-07 59.7 111 30.6
Medtr3g085570 Medicago truncatula HOM05D000667 ORTHO05D003843 5.6e-07 59.7 117 29.1
AL7G32390 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 7.3e-07 59.3 101 32.7
A08p26500 Brassica napus HOM05D000667 ORTHO05D003843 9.5e-07 58.9 123 28.5
C07p50500 Brassica napus HOM05D000249 ORTHO05D000206 9.5e-07 58.9 94 34.0
BraA08t34602Z Brassica rapa HOM05D000667 ORTHO05D003843 9.5e-07 58.9 123 28.5
DCAR_011455 Daucus carota HOM05D000249 ORTHO05D000206 9.5e-07 58.9 255 24.3
SMO252G0019 Selaginella moellendorffii HOM05D000667 ORTHO05D003095 9.5e-07 58.9 88 34.1
AL7G12790 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 1.2e-06 58.5 84 35.7
CARHR210320 Cardamine hirsuta HOM05D000249 ORTHO05D000206 1.2e-06 58.5 96 35.4
Gorai.007G062200 Gossypium raimondii HOM05D000249 ORTHO05D000206 1.2e-06 58.5 131 29.0
Sabra07G0068100 Salix brachista HOM05D000249 ORTHO05D000206 1.2e-06 58.5 83 34.9
C07p01540 Brassica napus HOM05D000249 ORTHO05D000206 1.6e-06 58.2 91 34.1
BraA05t21094Z Brassica rapa HOM05D000249 ORTHO05D000206 1.6e-06 58.2 136 29.4
Carub.0006s3086 Capsella rubella HOM05D000249 ORTHO05D000206 1.6e-06 58.2 130 27.7
Thhalv10025580m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 1.6e-06 58.2 93 35.5
Gohir.D11G057000 Gossypium hirsutum HOM05D000249 ORTHO05D000206 1.6e-06 58.2 131 29.0
TPR.G21786 Trifolium pratense HOM05D000667 ORTHO05D003843 1.6e-06 58.2 74 35.1
AL7G13600 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 2.1e-06 57.8 88 36.4
A08p23270 Brassica napus HOM05D000249 ORTHO05D000206 2.1e-06 57.8 135 29.6
BolC7t45550H Brassica oleracea HOM05D000249 ORTHO05D000206 2.1e-06 57.8 94 34.0
BraA08t34282Z Brassica rapa HOM05D000249 ORTHO05D000206 2.1e-06 57.8 135 29.6
COL.COLO4_31293 Corchorus olitorius HOM05D001422 ORTHO05D001321 2.1e-06 57.8 293 24.9
Lj1g0013672 Lotus japonicus HOM05D000249 ORTHO05D000206 2.1e-06 57.8 87 37.9
Sp7g32890 Schrenkiella parvula HOM05D000249 ORTHO05D000206 2.1e-06 57.8 185 24.9
BcaB05g24281 Brassica carinata HOM05D000249 ORTHO05D000206 2.8e-06 57.4 91 35.2
BcaNung00910 Brassica carinata HOM05D000249 ORTHO05D000206 2.8e-06 57.4 91 37.4
C01p00900 Brassica napus HOM05D000249 ORTHO05D000206 2.8e-06 57.4 91 37.4
BolC1t00091H Brassica oleracea HOM05D000249 ORTHO05D000206 2.8e-06 57.4 91 37.4
CSS0022832 Camellia sinensis var. sinensis HOM05D018855 ORTHO05D012831 2.8e-06 57.4 171 29.2
Carub.0007s0623 Capsella rubella HOM05D000249 ORTHO05D000206 2.8e-06 57.4 83 36.1
Dinv28168 Davidia involucrata HOM05D011324 ORTHO05D013448 2.8e-06 57.4 230 26.5
SMO137G0308 Selaginella moellendorffii HOM05D000667 ORTHO05D003095 2.8e-06 57.4 128 31.2
AL6G12300 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 3.6e-06 57.0 100 36.0
BcaC06g35639 Brassica carinata HOM05D000249 ORTHO05D000206 3.6e-06 57.0 91 34.1
BcaC06g35641 Brassica carinata HOM05D000249 ORTHO05D000206 3.6e-06 57.0 91 34.1
C07p12660 Brassica napus HOM05D000249 ORTHO05D000206 3.6e-06 57.0 91 34.1
BolC7t41748H Brassica oleracea HOM05D000249 ORTHO05D000206 3.6e-06 57.0 91 34.1
Carub.0002s2327 Capsella rubella HOM05D000249 ORTHO05D000206 3.6e-06 57.0 91 37.4
COL.COLO4_09850 Corchorus olitorius HOM05D014846 ORTHO05D016249 3.6e-06 57.0 200 26.0
Potri.007G081100 Populus trichocarpa HOM05D000249 ORTHO05D000206 3.6e-06 57.0 82 34.1
Potri.013G104300 Populus trichocarpa HOM05D000667 ORTHO05D003843 3.6e-06 57.0 74 33.8
Sopen07g022540 Solanum pennellii HOM05D003852 ORTHO05D003095 3.6e-06 57.0 120 30.0
AL7G16090 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 4.7e-06 56.6 192 25.5
C07p60270 Brassica napus HOM05D000249 ORTHO05D000206 4.7e-06 56.6 85 34.1
BolC7t46468H Brassica oleracea HOM05D000249 ORTHO05D000206 4.7e-06 56.6 85 34.1
BraA06t24071Z Brassica rapa HOM05D000249 ORTHO05D014429 4.7e-06 56.6 100 37.0
AUR62030873 Chenopodium quinoa HOM05D003569 ORTHO05D004178 4.7e-06 56.6 140 30.7
ClCG02G001190 Citrullus lanatus HOM05D007183 ORTHO05D008829 4.7e-06 56.6 106 30.2
Rhsim04G0202700 Rhododendron simsii HOM05D025536 ORTHO05D010877 4.7e-06 56.6 231 24.2
VMungo0251G1612 Vigna mungo HOM05D000667 ORTHO05D003843 4.7e-06 56.6 71 38.0
BcaC05g25104 Brassica carinata HOM05D000249 ORTHO05D014429 6.2e-06 56.2 89 37.1
C01p08810 Brassica napus HOM05D000249 ORTHO05D000206 6.2e-06 56.2 93 34.4
C02p09060 Brassica napus HOM05D000249 ORTHO05D000206 6.2e-06 56.2 98 31.6
BolC1t00871H Brassica oleracea HOM05D000249 ORTHO05D000206 6.2e-06 56.2 93 34.4
CSS0013471 Camellia sinensis var. sinensis HOM05D000249 ORTHO05D000206 6.2e-06 56.2 189 27.0
Carub.0002s1381 Capsella rubella HOM05D000667 ORTHO05D003843 6.2e-06 56.2 74 33.8
Carub.0007s2189 Capsella rubella HOM05D000249 ORTHO05D000206 6.2e-06 56.2 146 30.8
CiPaw.03G134300 Carya illinoinensis HOM05D000249 ORTHO05D000206 6.2e-06 56.2 93 37.6
COL.COLO4_09593 Corchorus olitorius HOM05D014846 ORTHO05D016249 6.2e-06 56.2 220 27.7
COL.COLO4_17456 Corchorus olitorius HOM05D014846 ORTHO05D016249 6.2e-06 56.2 57 47.4
Dinv28162 Davidia involucrata HOM05D011324 ORTHO05D013448 6.2e-06 56.2 131 30.5
SMO331G0074 Selaginella moellendorffii HOM05D000667 ORTHO05D003095 6.2e-06 56.2 88 33.0
SGA_v2.0_scaffold130G34356 Striga asiatica HOM05D017380 ORTHO05D019049 6.2e-06 56.2 194 29.4
AT4G34170 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 8.1e-06 55.8 98 33.7
C07p12690 Brassica napus HOM05D000249 ORTHO05D000206 8.1e-06 55.8 89 33.7
CSS0028906 Camellia sinensis var. sinensis HOM05D000249 ORTHO05D000206 8.1e-06 55.8 189 26.5
CARHR152800 Cardamine hirsuta HOM05D000249 ORTHO05D000206 8.1e-06 55.8 104 33.7
Haze_19937 Corylus avellana HOM05D008391 ORTHO05D009743 8.1e-06 55.8 235 28.9
DCAR_031193 Daucus carota HOM05D000667 ORTHO05D003843 8.1e-06 55.8 77 33.8
Eucgr.H04652 Eucalyptus grandis HOM05D000667 ORTHO05D003843 8.1e-06 55.8 103 28.2
Glyma.04G219400 Glycine max HOM05D000249 ORTHO05D000206 8.1e-06 55.8 130 27.7
Lj6C825T18 Lonicera japonica HOM05D000667 ORTHO05D003843 8.1e-06 55.8 62 38.7
Phvul.001G260600 Phaseolus vulgaris HOM05D000667 ORTHO05D003843 8.1e-06 55.8 74 33.8
Phvul.002G174600 Phaseolus vulgaris HOM05D000667 ORTHO05D003843 8.1e-06 55.8 71 36.6
Potri.011G046100 Populus trichocarpa HOM05D007183 ORTHO05D008829 8.1e-06 55.8 67 37.3
PGR004G1039 Punica granatum HOM05D000667 ORTHO05D003095 8.1e-06 55.8 72 41.7
QL11p019521 Quercus lobata HOM05D003569 ORTHO05D004178 8.1e-06 55.8 132 30.3


User provided reference genes

Program Settings