Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35613 Davidia involucrata HOM05D005124 ORTHO05D005914 1.3e-58 229.6 120 100.0
TWI63G0876 Tripterygium wilfordii HOM05D005124 ORTHO05D005914 4.0e-15 85.1 50 84.0
Atru.chr8.1964 Acer truncatum HOM05D005124 ORTHO05D005914 5.2e-15 84.7 50 80.0
TWI38G0280 Tripterygium wilfordii HOM05D005124 ORTHO05D005914 8.8e-15 84.0 50 82.0
Haze_17065 Corylus avellana HOM05D005124 ORTHO05D005914 1.2e-14 83.6 50 80.0
CiPaw.02G183600 Carya illinoinensis HOM05D005124 ORTHO05D005914 2.0e-14 82.8 50 80.0
Potri.010G204400 Populus trichocarpa HOM05D005124 ORTHO05D005914 2.0e-14 82.8 50 80.0
CiPaw.01G287000 Carya illinoinensis HOM05D005124 ORTHO05D005914 2.6e-14 82.4 50 80.0
PSO384G3927 Papaver somniferum HOM05D005124 ORTHO05D005914 2.6e-14 82.4 63 63.5
Cfa001478 Carpinus fangiana HOM05D005124 ORTHO05D005914 3.4e-14 82.0 50 78.0
vmacro07168 Vaccinium macrocarpon HOM05D005124 ORTHO05D005914 3.4e-14 82.0 50 78.0
Potri.008G055400 Populus trichocarpa HOM05D005124 ORTHO05D005914 4.4e-14 81.6 50 78.0
Aqoxy4G02912 Aquilegia oxysepala HOM05D005124 ORTHO05D005914 5.7e-14 81.3 63 63.5
MSTRG.8244 Avicennia marina HOM05D005124 ORTHO05D005914 5.7e-14 81.3 50 80.0
Cc02_g07900 Coffea canephora HOM05D005124 ORTHO05D005914 5.7e-14 81.3 50 76.0
Prupe.2G234700 Prunus persica HOM05D005124 ORTHO05D005914 5.7e-14 81.3 50 76.0
Thecc.10G042800 Theobroma cacao HOM05D005124 ORTHO05D005914 5.7e-14 81.3 50 78.0
Atru.chr12.456 Acer truncatum HOM05D005124 ORTHO05D005914 7.5e-14 80.9 50 78.0
Atru.chr12.478 Acer truncatum HOM05D005124 ORTHO05D005914 7.5e-14 80.9 50 78.0
Gohir.A10G218500 Gossypium hirsutum HOM05D005124 ORTHO05D005914 7.5e-14 80.9 50 78.0
Gohir.D10G228100 Gossypium hirsutum HOM05D005124 ORTHO05D005914 7.5e-14 80.9 50 78.0
Gorai.011G260500 Gossypium raimondii HOM05D005124 ORTHO05D005914 7.5e-14 80.9 50 78.0
PGR044G0197 Punica granatum HOM05D005124 ORTHO05D005914 7.5e-14 80.9 50 78.0
Sabra10G0158000 Salix brachista HOM05D005124 ORTHO05D005914 7.5e-14 80.9 50 78.0
CANSAT35G1058 Cannabis sativa HOM05D005124 ORTHO05D005914 9.8e-14 80.5 50 80.0
CARHR165370 Cardamine hirsuta HOM05D005124 ORTHO05D005914 9.8e-14 80.5 58 70.7
Ciclev10032183m.g Citrus clementina HOM05D005124 ORTHO05D005914 9.8e-14 80.5 50 80.0
Zm00001eb335900 Zea mays HOM05D005124 ORTHO05D005914 9.8e-14 80.5 69 60.9
MD07G1197900 Malus domestica HOM05D005124 ORTHO05D005914 1.3e-13 80.1 50 74.0
PSO339G1516 Papaver somniferum HOM05D005124 ORTHO05D005914 1.3e-13 80.1 50 78.0
SGA_v2.0_scaffold62G21508 Striga asiatica HOM05D005124 ORTHO05D005914 1.3e-13 80.1 50 78.0
Actinidia07729 Actinidia chinensis HOM05D005124 ORTHO05D005914 1.7e-13 79.7 50 78.0
EL10Ac2g04754 Beta vulgaris HOM05D005124 ORTHO05D005914 1.7e-13 79.7 64 62.5
COL.COLO4_15035 Corchorus olitorius HOM05D005124 ORTHO05D005914 1.7e-13 79.7 50 76.0
GSVIVG01016549001 Vitis vinifera HOM05D005124 ORTHO05D005914 1.7e-13 79.7 50 78.0
FvH4_7g22400 Fragaria vesca HOM05D005124 ORTHO05D005914 2.2e-13 79.3 50 76.0
Peaxi162Scf00015g01122 Petunia axillaris HOM05D005124 ORTHO05D005914 2.2e-13 79.3 50 76.0
PGR142G4329 Punica granatum HOM05D005124 ORTHO05D005914 2.2e-13 79.3 50 74.0
RcHm_v2.0_Chr1g0367031 Rosa chinensis HOM05D005124 ORTHO05D005914 2.2e-13 79.3 50 76.0
Thhalv10010564m.g Eutrema salsugineum HOM05D005124 ORTHO05D005914 2.8e-13 79.0 50 76.0
Manes.07G115800 Manihot esculenta HOM05D005124 ORTHO05D005914 2.8e-13 79.0 50 72.0
Nitab4.5_0006489g0030 Nicotiana tabacum HOM05D005124 ORTHO05D005914 2.8e-13 79.0 50 74.0
PGSC0003DMG400023428 Solanum tuberosum HOM05D005124 ORTHO05D005914 2.8e-13 79.0 50 76.0
Cpa.g.c31433 Carica papaya HOM05D005124 ORTHO05D005914 3.7e-13 78.6 50 76.0
Duzib114G0065 Durio zibethinus HOM05D005124 ORTHO05D005914 3.7e-13 78.6 50 76.0
Hma1.2p1_0493F.1_g164810 Hydrangea macrophylla HOM05D005124 ORTHO05D005914 3.7e-13 78.6 50 74.0
Nitab4.5_0001992g0020 Nicotiana tabacum HOM05D005124 ORTHO05D005914 3.7e-13 78.6 50 74.0
CSS0018512 Camellia sinensis var. sinensis HOM05D005124 ORTHO05D005914 4.8e-13 78.2 50 74.0
MD01G1133600 Malus domestica HOM05D005124 ORTHO05D005914 4.8e-13 78.2 50 72.0
QL08p059856 Quercus lobata HOM05D005124 ORTHO05D005914 4.8e-13 78.2 50 72.0
Sabra08G0040000 Salix brachista HOM05D005124 ORTHO05D005914 4.8e-13 78.2 50 76.0
Actinidia02951 Actinidia chinensis HOM05D005124 ORTHO05D005914 6.3e-13 77.8 49 77.6
Dinv03051 Davidia involucrata HOM05D005124 ORTHO05D005914 6.3e-13 77.8 50 76.0
Migut.F01507 Erythranthe guttata HOM05D005124 ORTHO05D005914 6.3e-13 77.8 50 76.0
Manes.10G030900 Manihot esculenta HOM05D005124 ORTHO05D005914 6.3e-13 77.8 57 68.4
Sp5g07110 Schrenkiella parvula HOM05D005124 ORTHO05D005914 6.3e-13 77.8 50 74.0
Sopen05g032970 Solanum pennellii HOM05D005124 ORTHO05D005914 6.3e-13 77.8 50 74.0
THA.LOC104810019 Tarenaya hassleriana HOM05D005124 ORTHO05D005914 6.3e-13 77.8 51 78.4
AUR62014578 Chenopodium quinoa HOM05D005124 ORTHO05D005914 8.3e-13 77.4 50 72.0
AUR62039383 Chenopodium quinoa HOM05D005124 ORTHO05D005914 8.3e-13 77.4 50 72.0
PSO151G0123 Papaver somniferum HOM05D005124 ORTHO05D005914 8.3e-13 77.4 50 74.0
PSO339G2840 Papaver somniferum HOM05D005124 ORTHO05D005914 8.3e-13 77.4 63 61.9
vmacro10239 Vaccinium macrocarpon HOM05D005124 ORTHO05D005914 8.3e-13 77.4 50 74.0
CAN.G1013.24 Capsicum annuum HOM05D005124 ORTHO05D005914 1.1e-12 77.0 50 74.0
CDE09G1206 Ceratophyllum demersum HOM05D005124 ORTHO05D005914 1.1e-12 77.0 64 60.9
MELO3C021634.2 Cucumis melo HOM05D005124 ORTHO05D005914 1.1e-12 77.0 50 70.0
CsaV3_5G026640 Cucumis sativus L. HOM05D005124 ORTHO05D005914 1.1e-12 77.0 50 70.0
Eucgr.G02931 Eucalyptus grandis HOM05D005124 ORTHO05D005914 1.1e-12 77.0 50 72.0
TAR636G2208 Trochodendron aralioides HOM05D005124 ORTHO05D005914 1.1e-12 77.0 50 74.0
AL5G36500 Arabidopsis lyrata HOM05D005124 ORTHO05D005914 1.4e-12 76.6 50 74.0
AT3G55360 Arabidopsis thaliana HOM05D005124 ORTHO05D005914 1.4e-12 76.6 50 74.0
BcaB01g00109 Brassica carinata HOM05D005124 ORTHO05D005914 1.4e-12 76.6 50 74.0
BcaC07g39849 Brassica carinata HOM05D005124 ORTHO05D005914 1.4e-12 76.6 50 74.0
A09p48250 Brassica napus HOM05D005124 ORTHO05D005914 1.4e-12 76.6 50 74.0
C08p30520 Brassica napus HOM05D005124 ORTHO05D005914 1.4e-12 76.6 50 74.0
BolC8t50671H Brassica oleracea HOM05D005124 ORTHO05D005914 1.4e-12 76.6 50 74.0
BraA09t40278Z Brassica rapa HOM05D005124 ORTHO05D005914 1.4e-12 76.6 50 74.0
Carub.0005s2200 Capsella rubella HOM05D005124 ORTHO05D005914 1.4e-12 76.6 50 74.0
DCAR_011693 Daucus carota HOM05D005124 ORTHO05D005914 1.4e-12 76.6 50 76.0
Gohir.D04G062800 Gossypium hirsutum HOM05D005124 ORTHO05D005914 1.4e-12 76.6 50 74.0
Gorai.012G070200 Gossypium raimondii HOM05D005124 ORTHO05D005914 1.4e-12 76.6 50 74.0
Glyma.02G273300 Glycine max HOM05D005124 ORTHO05D005914 1.8e-12 76.3 50 76.0
Nn2g10381 Nelumbo nucifera HOM05D005124 ORTHO05D005914 1.8e-12 76.3 50 74.0
Rhsim09G0165600 Rhododendron simsii HOM05D005124 ORTHO05D005914 1.8e-12 76.3 50 72.0
Solyc05g054490.3 Solanum lycopersicum HOM05D005124 ORTHO05D005914 1.8e-12 76.3 50 72.0
unitig_736.g22316 Utricularia gibba HOM05D005124 ORTHO05D005914 1.8e-12 76.3 50 72.0
ClCG04G008230 Citrullus lanatus HOM05D005124 ORTHO05D005914 2.4e-12 75.9 51 70.6
Oeu064390.1 Olea europaea HOM05D005124 ORTHO05D005914 2.4e-12 75.9 50 74.0
Duzib106G0291 Durio zibethinus HOM05D005124 ORTHO05D005914 3.1e-12 75.5 51 76.5
Glyma.14G043500 Glycine max HOM05D005124 ORTHO05D005914 3.1e-12 75.5 50 74.0
Gohir.A05G349500 Gossypium hirsutum HOM05D005124 ORTHO05D005914 3.1e-12 75.5 50 72.0
ATR0559G034 Amborella trichopoda HOM05D005124 ORTHO05D005914 5.4e-12 74.7 63 58.7
ClCG09G019780 Citrullus lanatus HOM05D005124 ORTHO05D005914 5.4e-12 74.7 50 68.0
MBI05_g30240_MAGBIO Magnolia biondii HOM05D005124 ORTHO05D005914 5.4e-12 74.7 58 67.2
Sed0008291 Sechium edule HOM05D005124 ORTHO05D005914 5.4e-12 74.7 50 66.0
Hund16091 Selenicereus undatus HOM05D005124 ORTHO05D005914 5.4e-12 74.7 50 70.0
Lj1A937T93 Lonicera japonica HOM05D005124 ORTHO05D005914 7.0e-12 74.3 50 72.0
TPR.G11759 Trifolium pratense HOM05D005124 ORTHO05D005914 7.0e-12 74.3 50 74.0
Sed0011488 Sechium edule HOM05D005124 ORTHO05D005914 9.1e-12 73.9 50 68.0
Sc10g0001530 Simmondsia chinensis HOM05D005124 ORTHO05D005914 9.1e-12 73.9 50 68.0
Phvul.008G208700 Phaseolus vulgaris HOM05D005124 ORTHO05D005914 1.2e-11 73.6 50 74.0
HanXRQChr14g0457911 Helianthus annuus HOM05D005124 ORTHO05D005914 1.6e-11 73.2 50 74.0
Medtr5g087590 Medicago truncatula HOM05D005124 ORTHO05D005914 2.0e-11 72.8 50 72.0
TPR.G11707 Trifolium pratense HOM05D005124 ORTHO05D005914 2.0e-11 72.8 50 72.0
LjContig00564g0003972 Lotus japonicus HOM05D005124 ORTHO05D005914 2.7e-11 72.4 50 72.0
Aa31LG10G10370 Aethionema arabicum HOM05D005124 ORTHO05D005914 4.5e-11 71.6 50 64.0
Ah.10g037270 Amaranthus hybridus HOM05D005124 ORTHO05D005914 4.5e-11 71.6 48 66.7
FAN03G2181 Fragaria x ananassa HOM05D000173 ORTHO05D005914 4.5e-11 71.6 63 61.9
VMungo0647G2337 Vigna mungo HOM05D005124 ORTHO05D005914 4.5e-11 71.6 50 72.0
ECA238G0837 Erigeron canadensis HOM05D005124 ORTHO05D005914 7.7e-11 70.9 50 70.0
Lsat_1_v5_gn_2_119361 Lactuca sativa HOM05D005124 ORTHO05D005914 7.7e-11 70.9 50 72.0
arahy.Tifrunner.gnm1.ann1.5S3M3D Arachis hypogaea HOM05D005124 ORTHO05D005914 1.0e-10 70.5 58 63.8
Lalb_Chr10g0105851 Lupinus albus HOM05D005124 ORTHO05D005914 1.0e-10 70.5 50 72.0
Lalb_Chr17g0347451 Lupinus albus HOM05D005124 ORTHO05D005914 1.0e-10 70.5 50 68.0
FAN06G1643 Fragaria x ananassa HOM05D000173 ORTHO05D005914 1.3e-10 70.1 63 60.3
FAN06G1830 Fragaria x ananassa HOM05D000173 ORTHO05D005914 1.3e-10 70.1 63 60.3
FAN10G1013 Fragaria x ananassa HOM05D005124 ORTHO05D005914 1.3e-10 70.1 63 60.3
HanXRQChr02g0037461 Helianthus annuus HOM05D005124 ORTHO05D005914 1.3e-10 70.1 50 70.0
HanXRQChr08g0220691 Helianthus annuus HOM05D005124 ORTHO05D005914 1.3e-10 70.1 50 66.0
arahy.Tifrunner.gnm1.ann1.4ZRU7U Arachis hypogaea HOM05D005124 ORTHO05D005914 1.7e-10 69.7 50 68.0
FAN01G2689 Fragaria x ananassa HOM05D000173 ORTHO05D005914 2.9e-10 68.9 63 58.7
FAN01G0844 Fragaria x ananassa HOM05D000173 ORTHO05D005914 3.8e-10 68.6 63 58.7
CDE02G1562 Ceratophyllum demersum HOM05D005124 ORTHO05D005914 5.0e-10 68.2 62 58.1
Hund13757 Selenicereus undatus HOM05D005124 ORTHO05D005914 5.0e-10 68.2 50 66.0
Sc11g0007960 Simmondsia chinensis HOM05D005124 ORTHO05D005914 5.0e-10 68.2 50 68.0
Ca_06145_v3 Cicer arietinum L. HOM05D005124 ORTHO05D005914 6.6e-10 67.8 50 66.0
SEGI_04878 Sequoiadendron giganteum HOM05D005124 ORTHO05D005914 8.6e-10 67.4 50 56.0
CBR_g107 Chara braunii HOM05D005124 ORTHO05D005914 3.3e-09 65.5 50 62.0
SMO111G0037 Selaginella moellendorffii HOM05D005124 ORTHO05D005914 9.5e-09 63.9 50 60.0
Mapoly0001s0158 Marchantia polymorpha HOM05D005124 ORTHO05D005914 2.1e-08 62.8 50 54.0
THA.LOC104806959 Tarenaya hassleriana HOM05D005124 ORTHO05D005914 2.1e-08 62.8 66 56.1
Cc00_g31070 Coffea canephora HOM05D005124 ORTHO05D005914 3.6e-08 62.0 36 80.6
QL07p048136 Quercus lobata HOM05D005124 ORTHO05D005914 4.7e-08 61.6 36 86.1
Pp3c16_5330 Physcomitrium patens HOM05D005124 ORTHO05D005914 5.7e-06 54.7 64 40.6
Pp3c27_2450 Physcomitrium patens HOM05D005124 ORTHO05D005914 5.7e-06 54.7 50 46.0
BolC6t37460H Brassica oleracea HOM05D005124 ORTHO05D005914 9.8e-06 53.9 36 66.7


User provided reference genes

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