Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 5.2e-63 244.2 121 100.0
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 2.5e-33 145.6 102 73.5
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 5.7e-30 134.4 108 67.6
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 2.9e-29 132.1 98 67.3
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 3.7e-29 131.7 96 69.8
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 9.2e-28 127.1 97 71.1
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 1.2e-27 126.7 95 68.4
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 2.0e-27 125.9 99 71.7
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 3.5e-27 125.2 97 66.0
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 7.8e-27 124.0 92 69.6
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 1.0e-26 123.6 101 67.3
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 1.0e-26 123.6 97 64.9
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 1.7e-26 122.9 98 67.3
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 1.7e-26 122.9 96 64.6
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 3.9e-26 121.7 98 69.4
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 3.9e-26 121.7 97 62.9
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 6.6e-26 120.9 99 65.7
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 6.6e-26 120.9 99 67.7
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 6.6e-26 120.9 99 67.7
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 8.6e-26 120.6 97 67.0
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 2.5e-25 119.0 97 64.9
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 2.5e-25 119.0 98 64.3
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 2.5e-25 119.0 97 63.9
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 4.3e-25 118.2 102 64.7
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 5.6e-25 117.9 99 65.7
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 7.3e-25 117.5 98 67.3
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 1.6e-24 116.3 112 59.8
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 2.1e-24 115.9 96 61.5
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 2.1e-24 115.9 96 61.5
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 2.1e-24 115.9 98 65.3
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 2.8e-24 115.5 98 67.3
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 2.8e-24 115.5 98 65.3
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 3.6e-24 115.2 98 63.3
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 4.7e-24 114.8 103 65.0
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 4.7e-24 114.8 96 60.4
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 4.7e-24 114.8 101 67.3
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 4.7e-24 114.8 98 65.3
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 4.7e-24 114.8 100 65.0
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 8.0e-24 114.0 98 66.3
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 1.4e-23 113.2 98 63.3
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 2.3e-23 112.5 94 61.7
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 3.1e-23 112.1 98 62.2
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 3.1e-23 112.1 99 62.6
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 3.1e-23 112.1 97 59.8
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 4.0e-23 111.7 103 65.0
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 4.0e-23 111.7 96 59.4
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 5.2e-23 111.3 93 60.2
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 6.8e-23 110.9 97 62.9
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 1.2e-22 110.2 99 63.6
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 1.2e-22 110.2 98 64.3
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 1.2e-22 110.2 96 65.6
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 1.5e-22 109.8 98 65.3
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 9.8e-22 107.1 98 63.3
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 9.8e-22 107.1 98 64.3
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 4.9e-21 104.8 98 57.1
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 6.4e-21 104.4 103 60.2
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 8.3e-21 104.0 95 57.9
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 1.4e-20 103.2 93 60.2
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 1.9e-20 102.8 99 56.6
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 2.4e-20 102.4 95 53.7
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 4.1e-20 101.7 97 59.8
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 4.1e-20 101.7 93 62.4
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 4.1e-20 101.7 91 59.3
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 4.1e-20 101.7 72 68.1
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 5.4e-20 101.3 97 56.7
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 5.4e-20 101.3 97 56.7
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 5.4e-20 101.3 93 59.1
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 7.0e-20 100.9 94 58.5
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 7.0e-20 100.9 93 58.1
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 9.2e-20 100.5 99 57.6
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 9.2e-20 100.5 97 56.7
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 1.2e-19 100.1 110 53.6
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 1.6e-19 99.8 57 82.5
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 1.6e-19 99.8 92 59.8
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 2.7e-19 99.0 93 58.1
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 3.5e-19 98.6 95 52.6
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 1.0e-18 97.1 98 56.1
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 1.0e-18 97.1 59 74.6
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 1.3e-18 96.7 93 57.0
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 1.7e-18 96.3 97 56.7
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 2.3e-18 95.9 98 55.1
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 2.3e-18 95.9 95 54.7
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 2.3e-18 95.9 95 54.7
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 2.3e-18 95.9 95 54.7
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 2.3e-18 95.9 95 53.7
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 2.3e-18 95.9 95 53.7
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 3.9e-18 95.1 100 57.0
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 3.9e-18 95.1 99 56.6
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 3.9e-18 95.1 92 54.3
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 5.0e-18 94.7 54 81.5
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 5.0e-18 94.7 97 56.7
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 5.0e-18 94.7 100 53.0
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 6.6e-18 94.4 101 54.5
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 6.6e-18 94.4 90 55.6
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 6.6e-18 94.4 97 53.6
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 6.6e-18 94.4 97 53.6
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 6.6e-18 94.4 98 52.0
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 8.6e-18 94.0 97 55.7
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 1.1e-17 93.6 97 55.7
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 1.1e-17 93.6 97 54.6
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 1.5e-17 93.2 98 57.1
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 1.5e-17 93.2 111 54.1
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 1.9e-17 92.8 101 54.5
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 1.9e-17 92.8 97 54.6
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 1.9e-17 92.8 98 57.1
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 2.5e-17 92.4 99 56.6
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 2.5e-17 92.4 99 56.6
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 2.5e-17 92.4 99 56.6
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 3.3e-17 92.0 96 58.3
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 4.3e-17 91.7 100 54.0
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 7.3e-17 90.9 98 56.1
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 1.2e-16 90.1 99 54.5
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 1.6e-16 89.7 97 52.6
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.6e-16 89.7 117 45.3
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 2.1e-16 89.4 51 82.4
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 2.8e-16 89.0 99 51.5
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 3.6e-16 88.6 99 52.5
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 4.7e-16 88.2 97 50.5
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 1.8e-15 86.3 82 56.1
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.0e-14 82.8 46 84.8
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 3.4e-14 82.0 124 46.8
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 7.5e-14 80.9 47 80.9
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 1.3e-13 80.1 42 81.0
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 2.2e-13 79.3 58 69.0
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 2.4e-12 75.9 66 59.1
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 4.1e-12 75.1 42 81.0
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 5.4e-12 74.7 51 64.7
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 7.1e-12 74.3 42 78.6
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 1.7e-10 69.7 71 52.1
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 5.1e-10 68.2 60 55.0
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 1.1e-09 67.0 61 59.0
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 3.3e-09 65.5 78 47.4
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 4.3e-09 65.1 52 59.6
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 6.8e-07 57.8 67 47.8


User provided reference genes

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