Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35573 Davidia involucrata HOM05D005320 ORTHO05D007922 1.3e-125 453.0 215 100.0
Rhsim05G0195000 Rhododendron simsii HOM05D005320 ORTHO05D007922 1.3e-117 426.4 215 94.0
Actinidia05326 Actinidia chinensis HOM05D005320 ORTHO05D007922 8.4e-117 423.7 215 93.0
CSS0049441 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 5.5e-116 421.0 219 92.2
GSVIVG01034127001 Vitis vinifera HOM05D005320 ORTHO05D007922 9.3e-116 420.2 215 91.6
vmacro20179 Vaccinium macrocarpon HOM05D005320 ORTHO05D007922 1.3e-114 416.4 231 87.4
Nitab4.5_0000770g0150 Nicotiana tabacum HOM05D005320 ORTHO05D007922 2.3e-114 415.6 216 92.1
Nn2g11189 Nelumbo nucifera HOM05D005320 ORTHO05D007922 3.0e-114 415.2 215 89.8
Manes.09G092200 Manihot esculenta HOM05D005320 ORTHO05D007922 5.1e-114 414.5 215 90.7
Dinv37147 Davidia involucrata HOM05D005320 ORTHO05D007922 2.5e-113 412.1 237 84.0
Thecc.05G035400 Theobroma cacao HOM05D005320 ORTHO05D007922 2.5e-113 412.1 216 90.3
TWI74G0393 Tripterygium wilfordii HOM05D005320 ORTHO05D007922 2.5e-113 412.1 215 90.7
Gohir.A04G083900 Gossypium hirsutum HOM05D005320 ORTHO05D007922 3.3e-113 411.8 215 89.3
MD04G1133400 Malus domestica HOM05D005320 ORTHO05D007922 9.6e-113 410.2 215 89.3
CiPaw.09G195900 Carya illinoinensis HOM05D005320 ORTHO05D007922 1.6e-112 409.5 215 90.2
Gohir.D04G122700 Gossypium hirsutum HOM05D005320 ORTHO05D007922 1.6e-112 409.5 215 88.8
PGR031G0341 Punica granatum HOM05D005320 ORTHO05D007922 1.6e-112 409.5 215 89.3
PSO339G2759 Papaver somniferum HOM05D005320 ORTHO05D007922 3.7e-112 408.3 215 87.9
QL07p030104 Quercus lobata HOM05D005320 ORTHO05D007922 3.7e-112 408.3 214 88.8
QL07p030908 Quercus lobata HOM05D005320 ORTHO05D007922 3.7e-112 408.3 214 88.8
Hma1.2p1_1082F.1_g255150 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 4.8e-112 407.9 216 89.4
MD12G1146200 Malus domestica HOM05D005320 ORTHO05D007922 4.8e-112 407.9 215 89.3
arahy.Tifrunner.gnm1.ann1.AE34S8 Arachis hypogaea HOM05D005320 ORTHO05D007922 6.3e-112 407.5 216 90.3
arahy.Tifrunner.gnm1.ann1.SHW8SI Arachis hypogaea HOM05D005320 ORTHO05D007922 6.3e-112 407.5 216 90.3
CANSAT35G1431 Cannabis sativa HOM05D005320 ORTHO05D007922 1.1e-111 406.8 216 89.4
COL.COLO4_14757 Corchorus olitorius HOM05D005320 ORTHO05D007922 1.4e-111 406.4 215 88.8
Sc07g0007050 Simmondsia chinensis HOM05D005320 ORTHO05D007922 1.4e-111 406.4 213 88.3
Aqoxy1G00876 Aquilegia oxysepala HOM05D005320 ORTHO05D007922 1.8e-111 406.0 218 87.6
CAN.G324.16 Capsicum annuum HOM05D005320 ORTHO05D007922 1.8e-111 406.0 216 89.8
Gorai.012G105600 Gossypium raimondii HOM05D005320 ORTHO05D007922 1.8e-111 406.0 219 87.7
PSO063G2683 Papaver somniferum HOM05D005320 ORTHO05D007922 2.4e-111 405.6 215 87.4
Prupe.6G259400 Prunus persica HOM05D005320 ORTHO05D007922 2.4e-111 405.6 215 88.8
Ciclev10012735m.g Citrus clementina HOM05D005320 ORTHO05D007922 4.5e-110 401.4 215 86.5
Migut.J00304 Erythranthe guttata HOM05D005320 ORTHO05D007922 5.9e-110 401.0 215 87.0
Solyc10g084850.2 Solanum lycopersicum HOM05D005320 ORTHO05D007922 1.3e-109 399.8 216 88.4
PGSC0003DMG400011070 Solanum tuberosum HOM05D005320 ORTHO05D007922 1.3e-109 399.8 216 88.4
CsaV3_4G025180 Cucumis sativus L. HOM05D005320 ORTHO05D007922 2.9e-109 398.7 215 87.9
MSTRG.19072 Avicennia marina HOM05D005320 ORTHO05D007922 3.8e-109 398.3 215 86.5
Cc06_g02320 Coffea canephora HOM05D005320 ORTHO05D007922 3.8e-109 398.3 215 86.5
ClCG04G008030 Citrullus lanatus HOM05D005320 ORTHO05D007922 5.0e-109 397.9 215 87.9
Lalb_Chr01g0013501 Lupinus albus HOM05D005320 ORTHO05D007922 5.0e-109 397.9 215 87.0
Sopen10g034290 Solanum pennellii HOM05D005320 ORTHO05D007922 5.0e-109 397.9 216 88.0
SGA_v2.0_scaffold126G33759 Striga asiatica HOM05D005320 ORTHO05D007922 5.0e-109 397.9 215 86.5
Ca_20076_v3 Cicer arietinum L. HOM05D005320 ORTHO05D007922 8.4e-109 397.1 217 87.6
Glyma.03G068800 Glycine max HOM05D005320 ORTHO05D007922 1.4e-108 396.4 217 84.8
Atru.chr8.2015 Acer truncatum HOM05D005320 ORTHO05D007922 1.9e-108 396.0 216 87.5
unitig_21.g21010 Utricularia gibba HOM05D005320 ORTHO05D007922 1.9e-108 396.0 215 86.0
Glyma.01G100200 Glycine max HOM05D005320 ORTHO05D007922 2.5e-108 395.6 217 84.8
Potri.016G100600 Populus trichocarpa HOM05D005320 ORTHO05D007922 2.5e-108 395.6 221 85.1
TAR623G0888 Trochodendron aralioides HOM05D005320 ORTHO05D007922 4.2e-108 394.8 200 90.5
Lj3A964T54 Lonicera japonica HOM05D005320 ORTHO05D007922 1.2e-107 393.3 200 91.0
Psat7g239840 Pisum sativum HOM05D005320 ORTHO05D007922 1.6e-107 392.9 217 86.6
Medtr4g020460 Medicago truncatula HOM05D005320 ORTHO05D007922 3.5e-107 391.7 217 85.7
MBI05_g35634_MAGBIO Magnolia biondii HOM05D005320 ORTHO05D007922 7.9e-107 390.6 216 84.3
Lsat_1_v5_gn_5_153940 Lactuca sativa HOM05D005320 ORTHO05D007922 1.3e-106 389.8 215 86.0
CDE07G0950 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 1.8e-106 389.4 215 82.8
HanXRQChr13g0406901 Helianthus annuus HOM05D005320 ORTHO05D007922 2.3e-106 389.0 215 85.1
Lj3g0008944 Lotus japonicus HOM05D005320 ORTHO05D007922 2.3e-106 389.0 216 84.7
RcHm_v2.0_Chr3g0466041 Rosa chinensis HOM05D005320 ORTHO05D007922 6.7e-106 387.5 216 85.6
TPR.G17890 Trifolium pratense HOM05D005320 ORTHO05D007922 6.7e-106 387.5 217 85.3
BcaB06g29019 Brassica carinata HOM05D005320 ORTHO05D007922 8.7e-106 387.1 216 83.8
CDE06G1896 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 1.1e-105 386.7 215 83.7
Sp4g20060 Schrenkiella parvula HOM05D005320 ORTHO05D007922 1.1e-105 386.7 216 83.8
AL4G34610 Arabidopsis lyrata HOM05D005320 ORTHO05D007922 2.5e-105 385.6 216 83.3
AT2G37680 Arabidopsis thaliana HOM05D005320 ORTHO05D007922 2.5e-105 385.6 216 83.3
FAN02G2927 Fragaria x ananassa HOM05D005320 ORTHO05D007922 3.3e-105 385.2 216 85.6
VMungo0331G1509 Vigna mungo HOM05D005320 ORTHO05D007922 4.3e-105 384.8 210 83.8
BcaC02g07499 Brassica carinata HOM05D005320 ORTHO05D007922 5.7e-105 384.4 216 83.3
DCAR_012114 Daucus carota HOM05D005320 ORTHO05D007922 5.7e-105 384.4 220 84.5
ECA248G2752 Erigeron canadensis HOM05D005320 ORTHO05D007922 7.4e-105 384.0 216 85.2
FvH4_6g13220 Fragaria vesca HOM05D005320 ORTHO05D007922 7.4e-105 384.0 216 85.2
Thhalv10017226m.g Eutrema salsugineum HOM05D005320 ORTHO05D007922 1.3e-104 383.3 216 82.9
THA.LOC104823414 Tarenaya hassleriana HOM05D005320 ORTHO05D007922 1.3e-104 383.3 216 82.9
FAN14G1919 Fragaria x ananassa HOM05D005320 ORTHO05D007922 4.8e-104 381.3 200 89.5
CARHR131860 Cardamine hirsuta HOM05D005320 ORTHO05D007922 6.3e-104 380.9 216 82.9
BraA04t18363Z Brassica rapa HOM05D005320 ORTHO05D007922 8.2e-104 380.6 216 82.4
Peaxi162Scf00094g00911 Petunia axillaris HOM05D005320 ORTHO05D007922 4.1e-103 378.3 182 96.2
Carub.0004s1963 Capsella rubella HOM05D005320 ORTHO05D007922 2.6e-102 375.6 216 81.5
CSS0000536 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 5.9e-102 374.4 196 89.3
Sed0022090 Sechium edule HOM05D005320 ORTHO05D007922 1.0e-101 373.6 215 83.3
Os03g0679000 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 2.9e-101 372.1 219 78.5
Os01g0144200 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 9.4e-100 367.1 219 77.6
Nitab4.5_0005100g0070 Nicotiana tabacum HOM05D005320 ORTHO05D007922 1.6e-99 366.3 190 91.1
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 1.4e-98 363.2 211 80.1
Eucgr.K01475 Eucalyptus grandis HOM05D005320 ORTHO05D007922 1.4e-98 363.2 241 74.3
Oeu007799.1 Olea europaea HOM05D005320 ORTHO05D007922 1.8e-98 362.8 186 90.3
FAN05G0090 Fragaria x ananassa HOM05D005320 ORTHO05D007922 2.3e-98 362.5 202 85.1
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 3.9e-98 361.7 214 79.0
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 5.1e-98 361.3 203 82.3
AUR62043523 Chenopodium quinoa HOM05D005320 ORTHO05D007922 6.7e-98 360.9 176 93.2
HPP92_026786 Vanilla planifolia HOM05D005320 ORTHO05D007922 6.7e-98 360.9 207 82.1
AUR62042382 Chenopodium quinoa HOM05D005320 ORTHO05D007922 2.5e-97 359.0 178 91.6
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 4.3e-97 358.2 190 87.9
Duzib128G0467 Durio zibethinus HOM05D005320 ORTHO05D007922 5.7e-97 357.8 188 87.8
Aa31sc70G70 Aethionema arabicum HOM05D005320 ORTHO05D007922 7.4e-97 357.5 217 79.3
Phvul.010G015600 Phaseolus vulgaris HOM05D005320 ORTHO05D007922 6.3e-96 354.4 188 85.6
RcHm_v2.0_Chr3g0466001 Rosa chinensis HOM05D005320 ORTHO05D007922 1.1e-95 353.6 198 84.3
Duzib093G0721 Durio zibethinus HOM05D005320 ORTHO05D007922 5.3e-95 351.3 189 86.8
ATR0559G120 Amborella trichopoda HOM05D005320 ORTHO05D007922 3.6e-91 338.6 207 76.3
Zm00001eb124510 Zea mays HOM05D005320 ORTHO05D007922 1.0e-90 337.0 192 80.2
Mapoly0038s0068 Marchantia polymorpha HOM05D005320 ORTHO05D007922 3.3e-89 332.0 197 74.1
SMO356G0269 Selaginella moellendorffii HOM05D005320 ORTHO05D007922 4.5e-86 321.6 197 71.1
Pp3c6_13830 Physcomitrium patens HOM05D005320 ORTHO05D007922 1.3e-85 320.1 216 66.7
AagrBONN_evm.TU.Sc2ySwM_117.2668 Anthoceros agrestis HOM05D005320 ORTHO05D007922 1.3e-80 303.5 197 68.5
Hma1.2p1_0936F.1_g239015 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 5.9e-78 294.7 172 82.6
Hma1.2p1_1082F.1_g255160 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 5.9e-78 294.7 172 82.6
Cpa.g.c45575 Carica papaya HOM05D005320 ORTHO05D007922 8.5e-77 290.8 145 91.7
CBR_g30417 Chara braunii HOM05D005320 ORTHO05D007922 6.8e-74 281.2 200 64.0
Zm00001eb335820 Zea mays HOM05D005320 ORTHO05D007922 8.8e-74 280.8 145 86.9
EL10As1g23111 Beta vulgaris HOM05D005320 ORTHO05D007922 8.3e-72 274.2 133 94.0
Sabra16G0101600 Salix brachista HOM05D005320 ORTHO05D007922 1.9e-68 263.1 133 90.2
RcHm_v2.0_Chr3g0465971 Rosa chinensis HOM05D005320 ORTHO05D007922 7.2e-68 261.2 133 90.2
HPP92_000741 Vanilla planifolia HOM05D005320 ORTHO05D007922 5.4e-63 245.0 130 85.4
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 1.0e-61 240.7 122 88.5
Hma1.2p1_1082F.1_g255140 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 8.0e-59 231.1 125 85.6
RcHm_v2.0_Chr3g0465901 Rosa chinensis HOM05D005320 ORTHO05D007922 1.5e-57 226.9 144 75.7
Hma1.2p1_0766F.1_g215380 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 3.7e-48 195.7 106 85.8
RcHm_v2.0_Chr3g0465921 Rosa chinensis HOM05D005320 ORTHO05D007922 3.4e-41 172.6 89 89.9
HPP92_000739 Vanilla planifolia HOM05D005320 ORTHO05D007922 5.8e-41 171.8 93 87.1
EL10As1g23112 Beta vulgaris HOM05D005320 ORTHO05D007922 2.6e-33 146.4 86 80.2
Haze_20831 Corylus avellana HOM05D000026 ORTHO05D000094 1.6e-30 137.1 82 79.3
Cre17.g744497 Chlamydomonas reinhardtii HOM05D005320 ORTHO05D007922 1.2e-27 127.5 208 36.1
Mapoly0050s0129 Marchantia polymorpha HOM05D005320 ORTHO05D007922 2.1e-22 110.2 189 36.0
RcHm_v2.0_Chr7g0189661 Rosa chinensis HOM05D005320 ORTHO05D007922 3.2e-15 86.3 64 65.6
MELO3C003145.2 Cucumis melo HOM05D000231 ORTHO05D000132 4.6e-14 82.4 40 90.0
RcHm_v2.0_Chr4g0436891 Rosa chinensis HOM05D005320 ORTHO05D007922 5.6e-12 75.5 64 59.4
Pp3c27_5960 Physcomitrium patens HOM05D005320 ORTHO05D007922 2.9e-08 63.2 47 57.4


User provided reference genes

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