Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv35535 Davidia involucrata HOM05D005668 ORTHO05D007082 3.4e-101 371.7 192 100.0
Dinv37103 Davidia involucrata HOM05D005668 ORTHO05D007082 1.6e-58 229.9 191 68.6
Hma1.2p1_0671F.1_g200690 Hydrangea macrophylla HOM05D005668 ORTHO05D007082 7.0e-46 188.0 191 57.1
CSS0033766 Camellia sinensis var. sinensis HOM05D005668 ORTHO05D007082 6.7e-41 171.4 192 53.6
GSVIVG01034046001 Vitis vinifera HOM05D005668 ORTHO05D007082 6.7e-41 171.4 182 56.6
Actinidia13809 Actinidia chinensis HOM05D005668 ORTHO05D007082 1.7e-39 166.8 191 52.9
Actinidia29156 Actinidia chinensis HOM05D005668 ORTHO05D007082 5.9e-37 158.3 193 51.8
MSTRG.5615 Avicennia marina HOM05D005668 ORTHO05D007082 1.7e-36 156.8 190 53.7
CAN.G351.19 Capsicum annuum HOM05D005668 ORTHO05D007082 2.5e-35 152.9 122 68.0
Rhsim05G0201000 Rhododendron simsii HOM05D005668 ORTHO05D007082 4.7e-34 148.7 199 46.7
Lj3P959T33 Lonicera japonica HOM05D005668 ORTHO05D007082 1.0e-33 147.5 101 78.2
CiPaw.10G150900 Carya illinoinensis HOM05D005668 ORTHO05D007082 1.4e-33 147.1 177 49.2
HanXRQChr10g0292601 Helianthus annuus HOM05D005668 ORTHO05D007082 1.4e-33 147.1 190 50.0
Lsat_1_v5_gn_9_29260 Lactuca sativa HOM05D005668 ORTHO05D007082 1.4e-33 147.1 165 54.5
QL07p027771 Quercus lobata HOM05D005668 ORTHO05D007082 2.3e-33 146.4 177 47.5
Nitab4.5_0000119g0350 Nicotiana tabacum HOM05D005668 ORTHO05D007082 3.0e-33 146.0 134 60.4
PGSC0003DMG400019135 Solanum tuberosum HOM05D005668 ORTHO05D007082 3.0e-33 146.0 120 65.0
CiPaw.09G203400 Carya illinoinensis HOM05D005668 ORTHO05D007082 4.0e-33 145.6 177 48.0
Cc06_g01940 Coffea canephora HOM05D005668 ORTHO05D007082 6.7e-33 144.8 189 47.6
Haze_20910 Corylus avellana HOM05D005668 ORTHO05D007082 6.7e-33 144.8 173 50.3
Manes.09G099500 Manihot esculenta HOM05D005668 ORTHO05D007082 1.2e-32 144.1 146 61.6
TWI77G0370 Tripterygium wilfordii HOM05D005668 ORTHO05D007082 4.4e-32 142.1 169 49.1
ECA247G1252 Erigeron canadensis HOM05D005668 ORTHO05D007082 7.5e-32 141.4 111 68.5
Cpa.g.sc56.75 Carica papaya HOM05D005668 ORTHO05D007082 1.7e-31 140.2 171 49.7
HanXRQChr06g0176661 Helianthus annuus HOM05D005668 ORTHO05D007082 1.7e-31 140.2 165 49.7
Peaxi162Scf00014g01419 Petunia axillaris HOM05D005668 ORTHO05D007082 2.8e-31 139.4 170 50.6
SGA_v2.0_scaffold75G24983 Striga asiatica HOM05D005668 ORTHO05D007082 4.1e-30 135.6 163 52.8
Migut.J00254 Erythranthe guttata HOM05D005668 ORTHO05D007082 5.3e-30 135.2 182 51.6
PGSC0003DMG400020340 Solanum tuberosum HOM05D005668 ORTHO05D007082 1.2e-29 134.0 186 46.2
TAR633G1417 Trochodendron aralioides HOM05D005668 ORTHO05D007082 2.7e-29 132.9 99 74.7
Potri.006G093700 Populus trichocarpa HOM05D005668 ORTHO05D007082 3.5e-29 132.5 151 54.3
Solyc09g011730.4 Solanum lycopersicum HOM05D005668 ORTHO05D007082 5.9e-29 131.7 103 68.9
Sopen09g006550 Solanum pennellii HOM05D005668 ORTHO05D007082 5.9e-29 131.7 103 68.9
Nn2g13550 Nelumbo nucifera HOM05D005668 ORTHO05D007082 7.7e-29 131.3 95 75.8
Atru.chr8.2154 Acer truncatum HOM05D005668 ORTHO05D007082 1.3e-28 130.6 118 61.0
Potri.016G105600 Populus trichocarpa HOM05D005668 ORTHO05D007082 1.3e-28 130.6 93 75.3
Ciclev10012485m.g Citrus clementina HOM05D005668 ORTHO05D007082 1.7e-28 130.2 107 66.4
Thecc.05G026500 Theobroma cacao HOM05D005668 ORTHO05D007082 2.9e-28 129.4 105 64.8
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 3.8e-28 129.0 133 55.6
PSO384G2457 Papaver somniferum HOM05D005668 ORTHO05D007082 5.0e-28 128.6 102 70.6
Aqoxy5G03828 Aquilegia oxysepala HOM05D005668 ORTHO05D007082 2.5e-27 126.3 105 66.7
CANSAT35G1374 Cannabis sativa HOM05D005668 ORTHO05D007082 3.2e-27 125.9 146 50.7
PSO339G5656 Papaver somniferum HOM05D005668 ORTHO05D007082 7.2e-27 124.8 107 66.4
PGR044G0692 Punica granatum HOM05D005668 ORTHO05D007082 1.2e-26 124.0 159 46.5
unitig_27.g24805 Utricularia gibba HOM05D005668 ORTHO05D007082 1.6e-26 123.6 141 51.1
Hund26016 Selenicereus undatus HOM05D005668 ORTHO05D007082 2.1e-26 123.2 106 61.3
CAN.G978.9 Capsicum annuum HOM05D005668 ORTHO05D007082 3.6e-26 122.5 93 71.0
MBI14_g45810_MAGBIO Magnolia biondii HOM05D005668 ORTHO05D007082 4.7e-26 122.1 92 68.5
MBI14_g25115_MAGBIO Magnolia biondii HOM05D005668 ORTHO05D007082 6.1e-26 121.7 116 57.8
Sabra06G0071200 Salix brachista HOM05D005668 ORTHO05D007082 6.1e-26 121.7 101 66.3
Carub.0003s0836 Capsella rubella HOM05D005668 ORTHO05D007082 8.0e-26 121.3 91 67.0
Gohir.A09G162000 Gossypium hirsutum HOM05D005668 ORTHO05D007082 8.0e-26 121.3 112 58.0
EL10Ac7g17156 Beta vulgaris HOM05D005668 ORTHO05D007082 1.0e-25 120.9 144 50.7
COL.COLO4_14664 Corchorus olitorius HOM05D005668 ORTHO05D007082 1.4e-25 120.6 121 55.4
CARHR083600 Cardamine hirsuta HOM05D005668 ORTHO05D007082 1.8e-25 120.2 91 68.1
Gohir.D09G157600 Gossypium hirsutum HOM05D005668 ORTHO05D007082 2.3e-25 119.8 112 57.1
Gorai.006G179300 Gossypium raimondii HOM05D005668 ORTHO05D007082 2.3e-25 119.8 112 57.1
VMungo0540G0241 Vigna mungo HOM05D005668 ORTHO05D007082 5.2e-25 118.6 163 46.6
Duzib093G0236 Durio zibethinus HOM05D005668 ORTHO05D007082 6.8e-25 118.2 120 55.0
Sc01g0004980 Simmondsia chinensis HOM05D005668 ORTHO05D007082 6.8e-25 118.2 183 44.8
AT3G09250 Arabidopsis thaliana HOM05D005668 ORTHO05D007082 1.2e-24 117.5 91 63.7
BcaC09g48013 Brassica carinata HOM05D005668 ORTHO05D007082 1.5e-24 117.1 101 61.4
Thhalv10021409m.g Eutrema salsugineum HOM05D005668 ORTHO05D007082 2.0e-24 116.7 91 65.9
Sp3g07630 Schrenkiella parvula HOM05D005668 ORTHO05D007082 2.6e-24 116.3 91 64.8
AL3G20360 Arabidopsis lyrata HOM05D005668 ORTHO05D007082 4.4e-24 115.5 90 64.4
ClCG10G021640 Citrullus lanatus HOM05D005668 ORTHO05D007082 7.5e-24 114.8 104 59.6
RcHm_v2.0_Chr3g0464311 Rosa chinensis HOM05D005668 ORTHO05D007082 7.5e-24 114.8 150 47.3
THA.LOC104823270 Tarenaya hassleriana HOM05D005668 ORTHO05D007082 7.5e-24 114.8 92 63.0
Manes.07G057000 Manihot esculenta HOM05D005668 ORTHO05D007082 1.7e-23 113.6 101 62.4
arahy.Tifrunner.gnm1.ann1.J12K19 Arachis hypogaea HOM05D005668 ORTHO05D007082 2.2e-23 113.2 161 46.6
AUR62034588 Chenopodium quinoa HOM05D005668 ORTHO05D007082 2.2e-23 113.2 92 64.1
Eucgr.F01481 Eucalyptus grandis HOM05D005668 ORTHO05D007082 2.8e-23 112.8 98 61.2
BcaC09g48059 Brassica carinata HOM05D005668 ORTHO05D007082 4.8e-23 112.1 91 60.4
Glyma.01G107100 Glycine max HOM05D005668 ORTHO05D007082 4.8e-23 112.1 150 48.0
BraA01t04309Z Brassica rapa HOM05D005668 ORTHO05D007082 6.3e-23 111.7 91 60.4
BolC1t05468H Brassica oleracea HOM05D005668 ORTHO05D007082 8.3e-23 111.3 91 60.4
arahy.Tifrunner.gnm1.ann1.WQ4JXZ Arachis hypogaea HOM05D005668 ORTHO05D007082 1.1e-22 110.9 161 46.0
Lalb_Chr07g0193171 Lupinus albus HOM05D005668 ORTHO05D007082 1.1e-22 110.9 164 47.0
Prupe.6G267200 Prunus persica HOM05D005668 ORTHO05D007082 1.8e-22 110.2 121 54.5
CDE04G3656 Ceratophyllum demersum HOM05D005668 ORTHO05D007082 3.1e-22 109.4 101 57.4
Glyma.03G073762 Glycine max HOM05D005668 ORTHO05D007082 3.1e-22 109.4 88 67.0
TPR.G2978 Trifolium pratense HOM05D005668 ORTHO05D007082 3.1e-22 109.4 81 69.1
AUR62036679 Chenopodium quinoa HOM05D005668 ORTHO05D007082 4.1e-22 109.0 92 62.0
DCAR_024047 Daucus carota HOM05D005668 ORTHO05D007082 4.1e-22 109.0 72 77.8
Phvul.006G070400 Phaseolus vulgaris HOM05D005668 ORTHO05D007082 7.0e-22 108.2 143 46.9
Os02g0788500 Oryza sativa ssp. japonica HOM05D005668 ORTHO05D007082 2.0e-21 106.7 88 60.2
Phvul.006G070500 Phaseolus vulgaris HOM05D005668 ORTHO05D007082 2.0e-21 106.7 149 42.3
MELO3C009208.2 Cucumis melo HOM05D005668 ORTHO05D007082 5.9e-21 105.1 104 56.7
Lj3g0016116 Lotus japonicus HOM05D005668 ORTHO05D007082 7.7e-21 104.8 152 44.1
Aa31LG3G1740 Aethionema arabicum HOM05D005668 ORTHO05D007082 1.3e-20 104.0 166 42.2
Ca_07382_v3 Cicer arietinum L. HOM05D005668 ORTHO05D007082 1.7e-20 103.6 165 41.8
Gohir.A10G232501 Gossypium hirsutum HOM05D005668 ORTHO05D007082 1.7e-20 103.6 108 53.7
Gohir.D10G244900 Gossypium hirsutum HOM05D005668 ORTHO05D007082 2.3e-20 103.2 108 53.7
Gorai.011G282300 Gossypium raimondii HOM05D005668 ORTHO05D007082 2.3e-20 103.2 108 53.7
Medtr4g019910 Medicago truncatula HOM05D005668 ORTHO05D007082 2.3e-20 103.2 81 64.2
FAN02G1041 Fragaria x ananassa HOM05D005668 ORTHO05D007082 2.9e-20 102.8 116 50.9
FAN09G2081 Fragaria x ananassa HOM05D005668 ORTHO05D007082 2.9e-20 102.8 116 50.0
MD12G1156400 Malus domestica HOM05D005668 ORTHO05D007082 2.9e-20 102.8 113 52.2
Sed0009323 Sechium edule HOM05D005668 ORTHO05D007082 2.9e-20 102.8 89 59.6
CsaV3_3G034370 Cucumis sativus L. HOM05D005668 ORTHO05D007082 3.8e-20 102.4 129 48.8
Gohir.A10G229920 Gossypium hirsutum HOM05D005668 ORTHO05D007082 1.1e-19 100.9 108 51.9
FvH4_6g12490 Fragaria vesca HOM05D005668 ORTHO05D007082 1.5e-19 100.5 114 50.9
FAN14G5852 Fragaria x ananassa HOM05D005668 ORTHO05D007082 1.5e-19 100.5 114 50.9
Psat3g035960 Pisum sativum HOM05D005668 ORTHO05D007082 1.9e-19 100.1 81 63.0
MD04G1141800 Malus domestica HOM05D005668 ORTHO05D007082 4.2e-19 99.0 166 45.2
FAN05G5175 Fragaria x ananassa HOM05D005668 ORTHO05D007082 9.5e-19 97.8 116 49.1
Os01g0753200 Oryza sativa ssp. japonica HOM05D005668 ORTHO05D007082 9.5e-19 97.8 83 57.8
Atru.chr10.1066 Acer truncatum HOM05D005668 ORTHO05D007082 1.6e-18 97.1 142 47.2
ATR0950G003 Amborella trichopoda HOM05D005668 ORTHO05D007082 4.7e-18 95.5 78 59.0
SEGI_35617 Sequoiadendron giganteum HOM05D005668 ORTHO05D007082 1.0e-17 94.4 133 40.6
Psat7g240360 Pisum sativum HOM05D005668 ORTHO05D007082 2.3e-17 93.2 78 62.8
SHI12750 Sapria himalayana HOM05D005668 ORTHO05D007082 5.7e-16 88.6 92 51.1
Zm00001eb257420 Zea mays HOM05D005668 ORTHO05D007082 7.5e-16 88.2 106 50.0
BraA03t12781Z Brassica rapa HOM05D005668 ORTHO05D007082 2.8e-15 86.3 78 56.4
A03p36100 Brassica napus HOM05D005668 ORTHO05D007082 1.1e-14 84.3 74 58.1
HPP92_006850 Vanilla planifolia HOM05D005668 ORTHO05D007082 5.4e-14 82.0 66 59.1
HPP92_006867 Vanilla planifolia HOM05D005668 ORTHO05D007082 5.4e-14 82.0 66 59.1
arahy.Tifrunner.gnm1.ann1.2N10NB Arachis hypogaea HOM05D005668 ORTHO05D007082 1.6e-13 80.5 133 45.1
SMO143G0113 Selaginella moellendorffii HOM05D005668 ORTHO05D007082 1.5e-11 73.9 66 56.1
Nitab4.5_0000008g0300 Nicotiana tabacum HOM05D005668 ORTHO05D007082 4.3e-11 72.4 52 67.3
BcaC01g04218 Brassica carinata HOM05D005668 ORTHO05D007082 7.3e-11 71.6 81 51.9
Nitab4.5_0002152g0020 Nicotiana tabacum HOM05D005668 ORTHO05D007082 1.7e-07 60.5 71 53.5


User provided reference genes

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